LOC110521320 (LOC106584577)



Basic Information


Item Value
gene id LOC110521320
gene name LOC106584577
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 11593298 ~ 11594361 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021598802.2
CACAGGTATAAAAAGAAAGGTTTTAAACCAGTAGGATAACAGTTCCCCAGcaagagcagcagcagcacagagagacaAAATGACCTCCACCGGCATGAACATGAACAGCAGAATCACCTTCTACGAGGACAGGAACTTCCAGGGTCGTTCCTATGAGTGCAGCAGCGACTGCCCTGACATGTCCTCCTACCTGAGCCGCTGCCAGTCCTGCAGGGTTGAGAGTGGCTGCTTCATGGTTTACGACCGCTCCAACTACATGGGAAACCAGTGGTTCATGAAGAGGGGAGAGTATTCTGACTTCCAGCGCATGATGGGAATGACCGACATCAGGTCCTGCCGCATGATCCCCATGCACAGAGGTTCTTTCAGGATGAGGATCTACGAGAGGGAGAACTTTGGAGGTCAGATGCACGAGATGATGGACGACTGTGACAGCATCATGGATCGTTACCGCATGAACAACTGCATGTCCTGCAACGTTATGGACGGCCACTGGCTCATGTATGAGCAGCCCCAGTACAGAGGCAGGATGATGTACATGAGGCCTGGAGAGTACAGAAACTTTAACCAGATGGGCATGGGCATGAGGTTCATGAGCATGAGACGTATCAACGAGTCATGTTATTAGATATAGCTTTTACTGATGTAAATACGAGAAGCCAGTGAATAAAAACATTGAAAAAAAGGA

Function


NR:

description
gamma-crystallin M2-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021598802.2 True 688 mRNA 0.49 3 11593298 11594361

Neighbor


gene id symbol gene type direction distance location
LOC110521318 LOC106597951 coding upstream 171897 11418769 ~ 11421401 (+)
LOC110521319 LOC106597951 coding upstream 181878 11408759 ~ 11411420 (+)
LOC110520942 NA coding upstream 307996 11284984 ~ 11285302 (+)
LOC110522737 NA coding upstream 314351 11276180 ~ 11278947 (+)
LOC118945769 NA coding upstream 319504 11266353 ~ 11273794 (+)
LOC110521322 LOC106584576 coding downstream 79378 11673739 ~ 11681317 (+)
LOC110521323 LOC106561036 coding downstream 89488 11683849 ~ 11796935 (+)
LOC110521327 LOC106584571 coding downstream 426874 12021235 ~ 12023570 (+)
LOC110521328 LOC106584569 coding downstream 486001 12080362 ~ 12084936 (+)
LOC110522739 LOC106584566 coding downstream 492649 12087010 ~ 12091818 (+)
G2200066 NA non-coding upstream 73880 11519154 ~ 11519418 (+)
G2200065 NA non-coding upstream 74165 11518926 ~ 11519133 (+)
G2200043 NA non-coding upstream 86897 11506162 ~ 11506401 (+)
G2199998 NA non-coding upstream 123584 11469263 ~ 11469714 (+)
G2199833 NA non-coding upstream 186605 11398282 ~ 11406693 (+)
G2200291 NA non-coding downstream 206917 11801278 ~ 11801513 (+)
G2200299 NA non-coding downstream 217298 11811659 ~ 11811874 (+)
G2200309 NA non-coding downstream 229528 11823889 ~ 11824090 (+)
G2200325 NA non-coding downstream 246306 11840667 ~ 11840887 (+)
G2200329 NA non-coding downstream 250598 11844959 ~ 11845188 (+)
G2198837 NA other upstream 448626 11144213 ~ 11144672 (+)
LOC110521306 LOC106584595 other upstream 715509 10799756 ~ 10920504 (+)
G2198247 NA other upstream 1369181 10221650 ~ 10224117 (+)
G2197955 NA other upstream 1973011 9619867 ~ 9620287 (+)
calcb LOC100135819 other upstream 2143645 9418139 ~ 9449834 (+)
G2202196 NA other downstream 1606777 13201138 ~ 13201491 (+)
LOC110521355 LOC106584515 other downstream 1697875 13292190 ~ 13301806 (+)
tnnt3a LOC100136357 other downstream 1841447 13435735 ~ 13462187 (+)
G2203653 NA other downstream 2965086 14559447 ~ 14567103 (+)

Expression



Co-expression Network