LOC110521322 (LOC106584576)


Basic Information

Item Value
gene id LOC110521322
gene name LOC106584576
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 11673739 ~ 11681317 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598804.2
ATGCTATGATGGGATCTGCAGCAGATTTTAAAAAAGCCCCACAGGCTGGTTCCAGTTTAATTCACGCTGCTTCATGTTTGTCCAGACTGCAAGGACATGGCCTGAAGCAGAGCGCCACTGTATGTTCCTTGGAGCAAACCTGGCGTCTGTGCACAGCTCTGAGGAGTCCCAATTTCTACAGGCGGTGGTGTTGATCAAGACTGGCGATTTCCCTCTGACCTGGATTGGAGGATATGATGCTGTTCAGGCAAATGTGGAAaagGACAGGCTATGGTTCTGGAGTGACGGATCTAAATTTGATCACCAGAACTGGGCGAAAGACGAGCCCAATAACTATAAGGGTGCCAGAGAGCCATGTGTTCAGATGAACTTTGGAGGTAAAGATGCCTGGAATGATGAATTATGTGGAAGGAGATATCCCTCTGTGTGCTCCATAAGAAATTGTTCAATCCATCAAACTATCAACTGAAATCCAAAATTCCACTCTGTAGTGTCAGCATCCTAACTGAACATATTTtatggtaaaataaaaatactttttGAAGATTATTTGTTTCTGTAAAATGAAAGTTTTAATTACTTGTTGTACATAAATGTTGTGGTTTGTTGTCAATAAAAATGGGTTTGTTTGTGCA
>XM_036968675.1
ATGCTATGATGGGATCTGCAGCAGATTTTAAAAAAGCCCCACAGGCTGGTTCCAGTTTAATTCACGCTGCTTCATGTTTGTCCAGACTGCAAGGACATGGCCTGAAGCAGAGCGCCACTGTATGTTCCTTGGAGCAAACCTGGCGTCTGTGCACAGCTCTGAGGAGTCCCAATTTCTACAGGCGGTGGTGTTGATCAAGACTGGCGATTTCCCTCTGACCTGGATTGGAGGATATGATGCTGTTCAGGCAAATGTGGAAaagGACAGGCTATGGTTCTGGAGTGACGGATCTAAATTTGATCACCAGAACTGGGCGAAAGACGAGCCCAATAACTATAAGGGTGCCAGAGAGCCATGTGTTCAGATGAACTTTGGAGGTACAGTAAGCCCACTATCATTCACTGATCCATTCATCAAATTAAACGTTATTCATAGTAAAGATGCCTGGAATGATGAATTATGTGGAAGGAGATATCCCTCTGTGTGCTCCATAAGAAATTGTTCAATCCATCAAACTATCAACTGAAATCCAAAATTCCACTCTGTAGTGTCAGCATCCTAACTGAACATATTTtatggtaaaataaaaatactttttGAAGATTATTTGTTTCTGTAAAATGAAAGTTTTAATTACTTGTTGTACATAAATGTTGTGGTTTGTTGTCAATAAAAATGGGTTTGTTTGTGCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598804.2 False 635 mRNA 0.42 4 11673739 11681317
XM_036968675.1 True 692 mRNA 0.41 4 11673739 11681317

Neighbor

gene id symbol gene type direction distance location
LOC110521320 LOC106584577 coding upstream 79378 11593298 ~ 11594361 (+)
LOC110521318 LOC106597951 coding upstream 252338 11418769 ~ 11421401 (+)
LOC110521319 LOC106597951 coding upstream 262319 11408759 ~ 11411420 (+)
LOC110520942 NA coding upstream 388437 11284984 ~ 11285302 (+)
LOC110522737 NA coding upstream 394792 11276180 ~ 11278947 (+)
LOC110521323 LOC106561036 coding downstream 2532 11683849 ~ 11796935 (+)
LOC110521327 LOC106584571 coding downstream 339918 12021235 ~ 12023570 (+)
LOC110521328 LOC106584569 coding downstream 399045 12080362 ~ 12084936 (+)
LOC110522739 LOC106584566 coding downstream 405693 12087010 ~ 12091818 (+)
grm8b grm8 coding downstream 432816 12114133 ~ 12309649 (+)
G2200066 NA non-coding upstream 154321 11519154 ~ 11519418 (+)
G2200065 NA non-coding upstream 154606 11518926 ~ 11519133 (+)
G2200043 NA non-coding upstream 167338 11506162 ~ 11506401 (+)
G2199998 NA non-coding upstream 204025 11469263 ~ 11469714 (+)
G2199833 NA non-coding upstream 267046 11398282 ~ 11406693 (+)
G2200291 NA non-coding downstream 119961 11801278 ~ 11801513 (+)
G2200299 NA non-coding downstream 130342 11811659 ~ 11811874 (+)
G2200309 NA non-coding downstream 142572 11823889 ~ 11824090 (+)
G2200325 NA non-coding downstream 159350 11840667 ~ 11840887 (+)
G2200329 NA non-coding downstream 163642 11844959 ~ 11845188 (+)
G2198837 NA other upstream 529067 11144213 ~ 11144672 (+)
LOC110521306 LOC106584595 other upstream 795950 10799756 ~ 10920504 (+)
G2198247 NA other upstream 1449622 10221650 ~ 10224117 (+)
G2197955 NA other upstream 2053452 9619867 ~ 9620287 (+)
calcb LOC100135819 other upstream 2224086 9418139 ~ 9449834 (+)
G2202196 NA other downstream 1519821 13201138 ~ 13201491 (+)
LOC110521355 LOC106584515 other downstream 1610919 13292190 ~ 13301806 (+)
tnnt3a LOC100136357 other downstream 1754491 13435735 ~ 13462187 (+)
G2203653 NA other downstream 2878130 14559447 ~ 14567103 (+)

Expression


Co-expression Network