LOC110521327 (LOC106584571)


Basic Information

Item Value
gene id LOC110521327
gene name LOC106584571
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 12021235 ~ 12023570 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598811.2
CTTTGGAGTAGACCGACTATATGCAGACCCACTTCTGTTTTGTTCCGTTCTAGAGAAAAGTCTTTCGGAAATGTTGTCATCTCTTGTTCGTTTAACTTAGTCTGTGATTGAAATATTGTAATTATATAATTGGAGGAATAACAACCGCAATGTCTAACAATGAGGCTATGGAATGGAACAGCTGTGATAATGCAGTGCGCGAAAGGGATTTGCCATATCGGGTCCCAGGACATGATTTAGGGATAGCCAAGTTAAAGTTAGTAGTGGAGGGTTCTGTTTTTACAGAAGAGAGAGATTTCCTGGTCAAGAGCTGCGAGTATTTCCAAGCTCTCTACCGTTCAGGGATGAAAGAATGCCGGCAGGAGGAAATCCACTTGAAGGGTTTGTGTGCTCGAGGATTCTTGATCGCACTGGTGGTTTTACGAGGCAAGAGACCTATCCTGGATGCTGACGAAATCGTGGAGGCCATAGAATGCGCTGCCTTCCTGCAGGTAGAGCTTCTTGCCAAACATCTCACGGACCTGATCGACTCTGATAACTGTTTGCTAATGTATCACACCGCAGCAACCTTTGGCCTAATGACCCTCTACCATGCTGCTGCACTGTTTATCCGGAACATGTACCATGACTTAGAGGTCGAAGTCAGGAAAAGCTTACCGACAGAACTTGTTCGGTATGTAGAGTCACTGGTTCCTAGCGCATTTGTAGCAGTTGGAGCCCACTCGACTTGTGGTGTGGATGAAACCATCCACGCTGGCAACAGGACTTTGTGCTACCTGGACGATGAGGGGAAAAACTGGAAGGTCCTCACAGACCTACCCCTAGAGGCCAGTACCTCTATGGCCGGACTGACCGTTTTGGACAACAAGCTGTATGTCGTGGGAGGGATACAGGTGCAGGGTGCCCGCAAGTACGCTGTGGACACCTGCTTCTGCTACAGCGTGGAGGTTGACCAGTGGACCATGATAGCCAGTCCAAAACAGTTGCGGTACAACTTCTCTCTCGTGGGACTGGATGGATGTCTTTATGCCATTGGGGGCGAGTACGAGCGAACAATCATGTCATCAGTGGAAACTTATGAAGTTGCGACTGGAAGGTGGTCATTTGTGGCACATTTGCCTCGACCAGTCACCGGAGCAGCGTGCACCAAGGGCATGGGCCGGATATTTGTGTGCTTGTGGAAGCCCATGGAGACCACCGAAATCTATGAATACCTGCCCAGGACAGACCAGTGGTTGCTTGTCAGCACTTTGATAAGGCATCAGAGCTACGGCCATGCCATGGTGGCTCACCGGGATAACCTGTATGTCATGCGTAACGGGCCACAAGATGACTTCCTGAGATGCATGATGGACTGCTACAACCTCACCACAGGCCAGTGGACAGCCTTGCCAGGGCACTTTGCCAATAGCAAAGGCTCCCTGTTCACAGCCGTGGTGAGAGGCGACTCGGCTTACACGCTGAACCGAACCATGACTTTGGAGTACGCTATTGAGGGGAAAACGTGGAAGCCCAGGAACCAGATGAAGGGTTTCCCAAGAAGTGGCTCCTTGTGGACATTTTTTCTTAGGATTCCCAAGGGACGCAGAGGGTCCATATTGAATGGCATCCCAGATGGATATGGACAATGTTGAGAGAAAAGATTCCCCTGATCAGATCTGACATTCCCTTGAGAAGATGAGGTAGATGGGATCTTATATGCGATAATTAAATGCCACCTGAGCAAACCGGCAAAGGGATGGATATAGTCTCAGAGTATGACTTTGAAAAACCAAACTAAACATTGCCTCAATGAAAAGACCTACAACTGAGATAGATTCAGATATATTTGGACTTTCATGTGGATTTGTGTGACCGTTTCTTGAAAgtgtgaataataataataatatggtgGCTGCTAATTTTTGTCCTacttcacacatgtacaagtgtgtttTATATGCATGTGTTAGttggaaatgtgttttctttCATATCCCAaatccccctgagacaccctcggagagtggggccagggtcagccattatcaaGAGCAACCcttgagcaattagggttaagtgccttactcaagagcacattgacagatttttcacctagtcggcttggaGATTaaaactagcaacctttcggttactggtccaaagctctaactgtttggctacctgccgcccttgaGGCCCCGCAAATCATTGCCAGGTCTAAAAGATCAatacgtatgtgtgtgtcagacctATGTGACAGGTACATTTGTTCCTCAGTTGATGTGTTTCATCACTGTGTGTTGAATATCCAGGAATGCGATATATGTCTCTTTGAAATAAAAAAGGACACAGGT

Function

NR:

description
kelch repeat and BTB domain-containing protein 13-like

GO: NA

KEGG:

id description
K21913 KBTBD13; kelch repeat and BTB domain-containing protein 13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598811.2 True 2336 mRNA 0.47 1 12021235 12023570

Neighbor

gene id symbol gene type direction distance location
LOC110521323 LOC106561036 coding upstream 224333 11683849 ~ 11796935 (+)
LOC110521322 LOC106584576 coding upstream 339918 11673739 ~ 11681317 (+)
LOC110521320 LOC106584577 coding upstream 426874 11593298 ~ 11594361 (+)
LOC110521318 LOC106597951 coding upstream 599834 11418769 ~ 11421401 (+)
LOC110521319 LOC106597951 coding upstream 609815 11408759 ~ 11411420 (+)
LOC110521328 LOC106584569 coding downstream 56792 12080362 ~ 12084936 (+)
LOC110522739 LOC106584566 coding downstream 63440 12087010 ~ 12091818 (+)
grm8b grm8 coding downstream 90563 12114133 ~ 12309649 (+)
pot1 pot1 coding downstream 329467 12353037 ~ 12401803 (+)
LOC110521334 LOC106584563 coding downstream 391548 12415118 ~ 12423578 (+)
G2200445 NA non-coding upstream 6495 12013814 ~ 12014740 (+)
G2200443 NA non-coding upstream 11886 12009053 ~ 12009349 (+)
G2200336 NA non-coding upstream 166405 11854487 ~ 11854830 (+)
G2200333 NA non-coding upstream 170190 11850819 ~ 11851045 (+)
G2200332 NA non-coding upstream 170541 11850026 ~ 11850694 (+)
G2200450 NA non-coding downstream 1296 12024866 ~ 12025070 (+)
G2200467 NA non-coding downstream 27696 12051266 ~ 12051549 (+)
G2200480 NA non-coding downstream 43609 12067179 ~ 12067463 (+)
G2200483 NA non-coding downstream 51603 12075173 ~ 12106767 (+)
G2200592 NA non-coding downstream 236743 12260313 ~ 12260670 (+)
G2198837 NA other upstream 876563 11144213 ~ 11144672 (+)
LOC110521306 LOC106584595 other upstream 1143446 10799756 ~ 10920504 (+)
G2198247 NA other upstream 1797118 10221650 ~ 10224117 (+)
G2197955 NA other upstream 2400948 9619867 ~ 9620287 (+)
G2202196 NA other downstream 1177568 13201138 ~ 13201491 (+)
LOC110521355 LOC106584515 other downstream 1268666 13292190 ~ 13301806 (+)
tnnt3a LOC100136357 other downstream 1412238 13435735 ~ 13462187 (+)
G2203653 NA other downstream 2535877 14559447 ~ 14567103 (+)
G2203973 NA other downstream 3248475 15272045 ~ 15273733 (+)

Expression


Co-expression Network