LOC110521334 (LOC106584563)


Basic Information

Item Value
gene id LOC110521334
gene name LOC106584563
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 12415118 ~ 12423578 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598829.2
ACGTGTGTAGCTCTAGACGGAGCTTGGCACATTCCCAACTCCATCTCCGACTCTGGGCGTCGGGATCGTGGGTACCAGTAATAACCGTCAAGGGCGCTTTTCGGACATAGAAGCAAATGCTTTTGAATAAGAAATGCGATCTTGTGTCCATTTAACCTTTTACAATCTGTTTTATATTCAGAGGCACAGACGAAATTCAAACATACCCTACTTCACATGGTGAGAAAACAACCGTTGTTGAACTTTACTTTGTCGTATTTCGGAGACGCACCTGTTAATTGCCAAGTGCACTTTATTTAATTCGAAGTGGTGTTGACTATGGAATGAAGGTTTGGCTTTATTTCTGTCGTCTCTCCGATGTGGTAATCATCCATGGATAAATATTTGGAATACAATATACTATTGTTTCCTCTTTTAGAATAAACAATGCTGGTACTACTCTTAAGATTACTGTGTTTCTCACTTTGGAGCGAGAATGTGTTCTCGCAAATACACGGGGAGAAGACAAATATGATTCCTAGACATTATGAAACCGCCGTCACTATCGGGAATCTACACAAAACCAATAGTGATAGTCAGAGATTGCACTCGGCGTATGGCAGAGTTATCAACGAAATTGACTATAAAAGGGTGCGTACTCCAAGTTCATCCTCCTGGGATGTGATTAGGACATGGATGGATAACATAAATGTGACTTCATTCAATACGAAAAGTGGTATGAATGAAATAACAATGCGCAAAAGCAATTCGTCAAATGGAACAGAACCCATTTGGTTACCCGAGGAAGGCGAGTCAAAAAGGCTGATGGAGGAAAAGTTGGACACGGAGAAACATGCAGCCATGGGAACACGATATGGTGTATACATTCATTTAAAGCCCTCCACGAGACATAAGCGAGGAGGACACCACCGTGGCGAGCACAACCGGATCTGCATACACAAAAGAGCAAGTGTAGACCGTCGGAGAAGAAATGCGAAGGATAGCAGTAAAAAAGGGAATTTAATAAGCGAGCCAACCTTGCTGTCAGATGCGTCTTTGGACACACCGCTGGCCACGTGGGAACCGCTGCCTAAACCTATGGCCCAGAACCAGTCAACAGACATGCCATTACATGCCACTGATAATGAACAGTTCACTTTGCCAGAGCTCCAGGACTATACCCCACTGATTCCTCTCAATCCTCAAACTAGGAGAAAAGATGTAAAAAACCCATTTTACCCCGTAACAGCAGAATCATATGGGGCATATGCCATCATGATCATTTCGGTCATCATTTTCACTGTTGGATTAATTGGGAATATAGCAATCATGTGCATTGTGTGCCACAACTACTACATGAGAAGTATTTCAAATTCTCTTCTAGCCAATCTCGCCCTATGGGATTTTGTTGTCATCTTTTTTTGCCTGCCCCTGGTGATCTTCCATGAACTGACCAAGAATTGGCTGTTGGGGGAGTTCTCCTGTAAAATCATCCCCTATATTGAGGTCTCCTCCCTCGGGGTCACAACCTTCACCCTGTGTGCTTTGTGCATTGACCGCCTTCGCGCCGCCACCAACGCCCAGATGTATTACGAGATGATTGAAAACTGCGCCTCCACGGCCGCCAAGCTGGCCGTTATCTGGATCGGGGCTCTCTTATTGGCCCTGCCAGAGCTCCTGATCCACCAGCTGGTCACTGAAGATGGCGAGCCTCCGGATGTGACGCCCTGCCAGCGCTGCGTGGTTCGTATCTCCACCGACCTCCCCGACACGCTCTATGTGCTGGGCCTGACCTACGACGGAGCCCGCCTCTGGTGGTATTTTGGCTGCTACTTCTGCCTGCCAACGCTGTTCACCATCGGCAGCTCCCTAGTGACTGCCCGTAAAATCCAGCAGGCCGAGCGGGCCTGTGTGCGTGGCAACAAGAAGCAGCTCCAGCTGGAGAACCAGATGAACTGCACGGTTGTGGCGTTGGCCATCCTCTACGGCTTCTGCATCATCCCTGAGAACATCTGCAACATCGTCACTGTCTACATGGCAGCGGGTGTGCCCAGACGGACCCTGGACATTCTCCACCTGGTCAGCCAGCTGCTGTTGTTCTGTAAGTCGGCGGTGACACCCGTCCTGCTGTTCTGCCTGTACCAGCCCTTCAGCCGGGCCTTCctggactgctgctgctgctgctgtaacgAGTGCGGCCCTCCCAGGTCTtccaccaccgccaccaccagcGAGGAGAACGAGCACGAGTGCACCACCACCGACCTGGAGCTGTCACCATTCAGCACCATCCACAGGGAGGCTTCCTCCTCCTACACCACTGTGGGGACCCACTGCtgagaggtcaaaggtcatgaCCTCCTTCAGAAAGTTACAACTGCCATGTGAAGAGTTCAAGAGGTCGGACTTTAAACCAATTGGACCGGTTTCCCCACACCCAGGTTAAGGTTACTCCTGGAATAAAAGGCATGCTCAATGGACAATCTCCAGTGAGAGTGCTTGTAAATCAGAGAATAGGCTTAATCTGAGTCTGGGAGACCGGCCCTTAAGAGTTATGATCAGTTCATTTTTTATTCTTGTCAATTTAGGAATTGAATTGATAATGCGAATAAAGGGCACATCCCATTTTAAATCCATGTCCACTTGACTTTGAATTAAATTGACGTAAACTCTGGTGGACATAAGTGTCTTGGTCTACTTGAGGGCAGAGTTCTGTATACGTACTATACTGTCTGTCTACGCTTTGTTtacagcagtggtcaccaaccgtggttgatctccaaggcattcctagtcaatcaccaaacatttctgtaaaaaaaaaaacaataaagccTTGCGTTCCTATTTTGTTATTTGTTTTGCGCTGTTGGCGTTAGTTGCACTTTATTTTTGATTTCTTTTAGGTTGTAAGATGTagatgcacttgattcagcagccctagcgcCAGGAAGGCAAAGTCTTCCCATTTTGAATAACGTTTTTTAAATAGAATTTccaaatggtctgagaagaaaaACATTGGCAGGGAAATTCAAGcattgataatgtattgggcctatagcctactgcacaaacctcattgttaCAGAACTGTAATTGGTTACGTTTTCTAAGTCATGGTTTGTAAAAATCTGAGCAGTAGATCTCAGCTTCCATTTTGACTCAAAGTGATCTTCActcaaaggttggtgaccacttgTTTACAGAAACCATACGGAAAGGAATACATATGTATAGTTCAATTCAATTTATAGCAAATTCATTATAAACTCACCAGTGTTTTCTCTttttaattattatattattttttgggggggggtcatAATGTTCTTTTTCTGCTTCCACAGAGTGTCTGTGTCAAATGGAAAGTAATATATTGAAAATGGCTGATCGTACTGTATTGTGTTTAGCTTATAATGGTGATTCTTGTGAATCAGGTCAAAGTTATGCCTAGCTCCCTTGCTATGTAAGTATATTATGCACTCTGTATTTGATAGCAGAAAACTGTACGATacacttcagtcagtcagtaaagtTACTGGAGtggtcttttttgttgttgttgctcacTTTAATAAAAAAAGAACACAGAA
>XM_021598830.2
ACGTGTGTAGCTCTAGACGGAGCTTGGCACATTCCCAACTCCATCTCCGACTCTGGGCGTCGGGATCGTGGGTACCAGTAATAACCGTCAAGGGCGCTTTTCGGACATAGAAGCAAATGCTTTTGAATAAGAAATGCGATCTTGTGTCCATTTAACCTTTTACAATCTGTTTTATATTCAGAGGCACAGACGAAATTCAAACATACCCTACTTCACATGGTCTCCTCCCTCGGGGTCACAACCTTCACCCTGTGTGCTTTGTGCATTGACCGCCTTCGCGCCGCCACCAACGCCCAGATGTATTACGAGATGATTGAAAACTGCGCCTCCACGGCCGCCAAGCTGGCCGTTATCTGGATCGGGGCTCTCTTATTGGCCCTGCCAGAGCTCCTGATCCACCAGCTGGTCACTGAAGATGGCGAGCCTCCGGATGTGACGCCCTGCCAGCGCTGCGTGGTTCGTATCTCCACCGACCTCCCCGACACGCTCTATGTGCTGGGCCTGACCTACGACGGAGCCCGCCTCTGGTGGTATTTTGGCTGCTACTTCTGCCTGCCAACGCTGTTCACCATCGGCAGCTCCCTAGTGACTGCCCGTAAAATCCAGCAGGCCGAGCGGGCCTGTGTGCGTGGCAACAAGAAGCAGCTCCAGCTGGAGAACCAGATGAACTGCACGGTTGTGGCGTTGGCCATCCTCTACGGCTTCTGCATCATCCCTGAGAACATCTGCAACATCGTCACTGTCTACATGGCAGCGGGTGTGCCCAGACGGACCCTGGACATTCTCCACCTGGTCAGCCAGCTGCTGTTGTTCTGTAAGTCGGCGGTGACACCCGTCCTGCTGTTCTGCCTGTACCAGCCCTTCAGCCGGGCCTTCctggactgctgctgctgctgctgtaacgAGTGCGGCCCTCCCAGGTCTtccaccaccgccaccaccagcGAGGAGAACGAGCACGAGTGCACCACCACCGACCTGGAGCTGTCACCATTCAGCACCATCCACAGGGAGGCTTCCTCCTCCTACACCACTGTGGGGACCCACTGCtgagaggtcaaaggtcatgaCCTCCTTCAGAAAGTTACAACTGCCATGTGAAGAGTTCAAGAGGTCGGACTTTAAACCAATTGGACCGGTTTCCCCACACCCAGGTTAAGGTTACTCCTGGAATAAAAGGCATGCTCAATGGACAATCTCCAGTGAGAGTGCTTGTAAATCAGAGAATAGGCTTAATCTGAGTCTGGGAGACCGGCCCTTAAGAGTTATGATCAGTTCATTTTTTATTCTTGTCAATTTAGGAATTGAATTGATAATGCGAATAAAGGGCACATCCCATTTTAAATCCATGTCCACTTGACTTTGAATTAAATTGACGTAAACTCTGGTGGACATAAGTGTCTTGGTCTACTTGAGGGCAGAGTTCTGTATACGTACTATACTGTCTGTCTACGCTTTGTTtacagcagtggtcaccaaccgtggttgatctccaaggcattcctagtcaatcaccaaacatttctgtaaaaaaaaaaacaataaagccTTGCGTTCCTATTTTGTTATTTGTTTTGCGCTGTTGGCGTTAGTTGCACTTTATTTTTGATTTCTTTTAGGTTGTAAGATGTagatgcacttgattcagcagccctagcgcCAGGAAGGCAAAGTCTTCCCATTTTGAATAACGTTTTTTAAATAGAATTTccaaatggtctgagaagaaaaACATTGGCAGGGAAATTCAAGcattgataatgtattgggcctatagcctactgcacaaacctcattgttaCAGAACTGTAATTGGTTACGTTTTCTAAGTCATGGTTTGTAAAAATCTGAGCAGTAGATCTCAGCTTCCATTTTGACTCAAAGTGATCTTCActcaaaggttggtgaccacttgTTTACAGAAACCATACGGAAAGGAATACATATGTATAGTTCAATTCAATTTATAGCAAATTCATTATAAACTCACCAGTGTTTTCTCTttttaattattatattattttttgggggggggtcatAATGTTCTTTTTCTGCTTCCACAGAGTGTCTGTGTCAAATGGAAAGTAATATATTGAAAATGGCTGATCGTACTGTATTGTGTTTAGCTTATAATGGTGATTCTTGTGAATCAGGTCAAAGTTATGCCTAGCTCCCTTGCTATGTAAGTATATTATGCACTCTGTATTTGATAGCAGAAAACTGTACGATacacttcagtcagtcagtaaagtTACTGGAGtggtcttttttgttgttgttgctcacTTTAATAAAAAAAGAACACAGAA

Function

NR:

description
prosaposin receptor GPR37-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598829.2 False 3575 mRNA 0.45 2 12415118 12423578
XM_021598830.2 True 2309 mRNA 0.47 2 12415118 12423578

Neighbor

gene id symbol gene type direction distance location
pot1 pot1 coding upstream 13315 12353037 ~ 12401803 (+)
grm8b grm8 coding upstream 105469 12114133 ~ 12309649 (+)
LOC110522739 LOC106584566 coding upstream 323300 12087010 ~ 12091818 (+)
LOC110521328 LOC106584569 coding upstream 330182 12080362 ~ 12084936 (+)
LOC110521327 LOC106584571 coding upstream 391548 12021235 ~ 12023570 (+)
LOC110521338 LOC105018628 coding downstream 104034 12527612 ~ 12545633 (+)
slc13a1 slc13a1 coding downstream 163395 12586973 ~ 12609390 (+)
cadps2 cadps2 coding downstream 198756 12622334 ~ 12890397 (+)
LOC110521342 LOC106584552 coding downstream 469742 12893320 ~ 12896797 (+)
aass LOC100136272 coding downstream 482571 12906149 ~ 12921316 (+)
G2200626 NA non-coding upstream 96052 12318851 ~ 12319066 (+)
G2200625 NA non-coding upstream 96272 12318632 ~ 12318846 (+)
G2200618 NA non-coding upstream 105182 12309694 ~ 12309936 (+)
G2200616 NA non-coding upstream 110255 12304203 ~ 12304863 (+)
G2200592 NA non-coding upstream 154448 12260313 ~ 12260670 (+)
G2200687 NA non-coding downstream 5309 12428887 ~ 12429318 (+)
G2200694 NA non-coding downstream 14741 12438319 ~ 12438552 (+)
G2200696 NA non-coding downstream 16734 12440312 ~ 12440539 (+)
G2200708 NA non-coding downstream 40644 12464222 ~ 12464537 (+)
G2200675 LOC106584561 non-coding downstream 44979 12468557 ~ 12469544 (+)
LOC110521323 LOC106561036 other upstream 618183 11683849 ~ 11796935 (+)
G2198837 NA other upstream 1270446 11144213 ~ 11144672 (+)
LOC110521306 LOC106584595 other upstream 1537329 10799756 ~ 10920504 (+)
G2198247 NA other upstream 2191001 10221650 ~ 10224117 (+)
G2197955 NA other upstream 2794831 9619867 ~ 9620287 (+)
G2202196 NA other downstream 777560 13201138 ~ 13201491 (+)
LOC110521355 LOC106584515 other downstream 868658 13292190 ~ 13301806 (+)
tnnt3a LOC100136357 other downstream 1012230 13435735 ~ 13462187 (+)
G2203653 NA other downstream 2135869 14559447 ~ 14567103 (+)
G2203973 NA other downstream 2848467 15272045 ~ 15273733 (+)

Expression


Co-expression Network