LOC110521338 (LOC105018628)


Basic Information

Item Value
gene id LOC110521338
gene name LOC105018628
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 12527612 ~ 12545633 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968916.1
AATCCACTGGGAAATAGGGCTAGACCATTCCATCCTTCGTGATATTTTTGGCATCCTCATTATATTGTAACACCAGAACATTTACAGAcgacattaaaaatatatattttttaatgcaaATTAATTTATTTCGGAAGAGGGGGCCTTAttcttacatttgtatatgatttTTTGGTTTCTCCACCCCCTTTCTCCATTGGAATGGCTGTTCCTTCACACTGCCTACTGTGCCATATTGGATGGATGTTAACGTTATCGATGTTGCAGCTGGAGTTACGAATGAAAGTTTAGATTTTGCCCTCTGCAGAGATTGGGGTTCCCACGGATTCTTCGAGGACCCTGGGGCATGGTGACGTTATTCAACAACCGGGATCCAAAAATATTTCATTTTGCAGGCCTCTAGCTACCTTAGAAACAACGTAATAAGACGATGCAGTTGCAGGCCATGGCGACCAAAGGCTGCATGAATTGTTTGTAATATTCAAGAGTAAAACAGTTAACTTTGTTTATCTGGAAATTATTTGGGAACATGAATAGCCATCCTCCGCAACGCCGGGTTGGAAATATTGGCTCCATACTCCTCACCCCGCAAGAGAACGAATGCCTCTTCAACTACCTGGGAAGGAAATGCATTACTCTGTGCACAGCGGTGGTCCAGGTGTATGGGGCAGACAGGAGCTCGTCCTGGGTGAAGAGGTGCTGCGGAGTAGCCTGTCTGATCAAGGATAACCCTCTGAGGTCCTACTTCATCAGGGTCTTTGACATCAAGGAAGGGAAAACCATGTttgaacaggagctctacaataacTTCTCAATCAACAGCTCGAGGTCCTATTTCATTTCGTTTTCAGGAGATAACTGCCAGGTAGGCCTGAACTTCGCTAGCGAGGAAGAGGCCAAGCGATTTAGAGCCGCACTGAAAGACCTACTCAGCAGACGGCAACGTAAAACGGGCCCAGCTCTCCCTATGGCCACTGTGGACATCAAGAACCCGGAGATCAACAATGTGCGCTTCCACAACTCCCACCATCATCAAcaccaccagcagcagcatcagccaCACCACGTCAACAACATGCTGCACAGCAGCTTCAACAAGAAGGAGAAGAAAGTCAAGGGCAAGAGGAAGAAGCTCACCAAGGCTGACATAGGCACCCCCAGCAACTTCCAGCACATCGGCCATGTGGGCTGGGACCCAAACACAGGCTTCGATTTGAATAACCTGGACCCGGAGCTAAAGAACCTGTTTGACATGTGTGGCATCTCAGAGGCCCAGCTGAAGGACAAGGAGACCTCCAAGGTCATCTATGACTTCATCGAAAAGAAAGGAGGGGTGGAGGCCGTCAAGAACGAGCTCCGTAGGCAAGccccaccacctcctccctctcggggtggcccacctcctcctcccccaccccacaGCTCGGGCCCAGctcctcccccaccaccaccacccccatcgCGAGGTGGCCGGGGTGCCCCGCCACCACCTCCACCCTCTCGGGCCCCCACCTctgcccctcccccccctcccccctccaggcCTGGTGCCCTAGgagccccccctcctcccccgccCCCCAACAGAGGGGGCCACGGCCACCACCACTACCAGCCACCGCCTCCACCCTCACATGCCCCCCAGGCCCCACCGCCACCTCCCCCACCAGCAGCACCACCCTCCGGTGGCGGGGgagcccctcctccacctcctccaccacctcccccaCCTGGACCCCCGCCCCCTCCAGAGCTGGACGGTGGTGTGGAGTCGCCCCACTCACCCCCGGGCTCAGGGGGTAAGTCGGCCCTGCTAGAGCAGATCCGTGGGGGCACCCAGCTGAAGAAGGTGGAGCCACCGGCCTCCAAGCCACCGGCCACCACCGTAGGGCGCGATGCCCTGCTCGACCAGATACGGCAGGGCATCCAGCTAAAAACCgtacCAGACGGCCCTGAATCGGGCTCCCCTACACCGGCCCCCTCGGCAGGCATCGTGGGGGCACTTATGGAAGTCATGCAGAAGAGGAGCAAAGCCATCCACTCCTCAGAtgaagatgaggatgatgatgacgaAGAGGATTTTGAAGATGACGACGAATGGGATGACTAGTAAAGTTTCAAGTCCTCCTCCCCAACACAACTGACACTAAACTGATCCTAAAATCTTCCAAAAACGGACTAAAATTGAGAGTGTTCTATGATTTTGCTCTATTTATTGTTGCCTTTTTTGCTTTTATTAACCTGTGCAATACCTTGTTCATTTAATCTGTAAAGTGTTGTCACACACCCTCTGTAGAGTATCTCTGGTAACACTTTCCTGCGACTCTGTCATAGAATGCTCACATCACTGTTAAAAGCATGATATACAAATATTATAAGCTGTCATAACTGTTCATGGTAATACGCTGACTTGCTCAGGCTGACCACCACTGCATGTGACGCTGCGAGATTGCTTGTCGTACGCTAATACAAGGTGTTATAAATCACCAATGACACCTGGCGTCTGTTTAGGAGGGTGCAATGTCACGGAACGTCCAGAGATAGAAACGTATTGTGTAGAATAGATATGATTCTCGGTCCTCAAGAATAGTTCTTATTCACTTACAGTATCAGCTAACATTATATTTCCATCTGCAACGTTCTGAACACTTAGCCCTATGGAATAACACACTGCTGCTATGTCATGGTTATGACAGCCTAAAGACAGCAGGTTCAAGTAGTACGGTATCTGATGGATTAACAGTGTGCAATTCTAGTTAGGATATATTTGTTTGGTGTGTTACTTTAAATGTTCTGTTCCCCTGTCCgtaaagaaagggagaaagatggatatatatatatatatatatatgtacacacacacacacgtaacaaaCGAGAGAGGTCATTGTTGTGTTGTTAATGCAAGATAACACTATTTTCTTACCCTACTTTTCTGTACCTTCGATTTTCTTAATGAGATCCTAGTTTAGCACAGTTATTTTTTCATATGGAGGCCACTTATTAGAATTGTAAGCCCAAATTGACTGGTGTAAATGTGTTCAATGCTTCGTTCAAAGCTGTTATCTTGGCACAATTTCAAAATTGAATTTACTATAAGAGTAACAGTGCAATGTCATAGTTGTGTTCCAACAATCTACTAAAGTGATGGGGAAAACAAAGCTTACGATGTGCTGGATcagtatacagatgtaggatcttaatttgagcctgtttgctacagcaggaaaataatcctgtggCAACAGGAActgtgattttttttgtgtgtatttttcaTGCCTTTTTTTGCCCCAATTTCGgcgtatccaattggtagtagttagtcttgtctcatcgctgcaactcctatacggactcgggagaggtgaaggtcgagaaccatgcgtcctccgaaacacaacccaaccaagccgcactgcttcttgacacaatgcccatccaaccaggaaaccagccgcaccaatatgtcataggaaacaccgtacacctggcgactgtgtcagtgtgcactgtgcccggcccgccacaggagtcgctagtgcgcgatgagacaaggatatccctgccggccgaaccctccctaacccggatgatgctgggtcaattgtgcgtcgccccatgggccttccggtcgcggccggctgcatcAGAGCCTGgcctcgaacccagaatctctagtggtaCAGCCTTAGACCAATGTGCCACTCGGAAGGCCGGAACTGTACatttttatgtggattataatgaatggacatttttcatgagggaaaatcaagtctggaaATTAGAAACTTCAGAAGCcgttttaaacctcaaatatactACAAGTTAAAAATGTCCTACATTGTGGAAAAGTTCTCCAGCAACAGGATGATACAATTTAAGATCTACATCTGTATACTGCCTGCCAGTCAGTGACTAATGGAATATATAATATATgctatttagcagacgcttttatccgaAGTGATTTAGTCACAAGTGCGTACATTTTTTTACGTATGGCTGTCCTGGGAaccaaacccactatcctggcgttgcaagaGCCTTGTCTACCAaatgagctacagaggaccagagAGGATCATGGAAGCTCTTAAAGCAGCTTTTATTAGAATCCATTTATGATTGACACTACGGAAATGTCCTGCTCATTATGGGTTTACAGAGGTGTCCTGTGTTAACTTTCAGAGGGGAAATTATCACTACAAAAATGTATAACTTATACAAAAATAGGATTCATTTAAGCTTTTGTTTTGTCTCTTTTCTCTAACTTACTGTATCTGTTACAATAAATATtattctctcctccctgctggaATTAGAATAATATTTATGTTACTAGCTATTAGGTCAGTGTTCATATTCAGCAGATCTAGAAACATCTTCCAGTTTTTCTTGAACTTTTATGGGATGAATCTGTAAATGCCTCCATACAAAAGCTAATAAGGAACCAAAATTGTCATTTGCACGAAGCGTCTACAAGGCTTTGGTTTCACTATCCTAAATGCTTTCATGGTGATAATGCTGATAATGATGCCTGTGAAACTCAattttacagtatatacagaagTAGCCAAATGGATGATGTTTGAACCGTATTGCCTGTCTCAATTTCTACCATCCTCCACCGAGGTGATTGCTGCATTAAGAAACCGTAATACTGACATCAAACCTTCAGAGGTTGGAAAAAGCAATGGAAATACTAAATTGTATACTTAAATAAATGTTAATATTTACAGAGA
>XM_036968915.1
ATCCACTGGGAAATAGGGCTAGACCATTCCATCCTTCGTGATATTTTTGGCATCCTCATTATATTGTAACACCAGAACATTTACAGAcgacattaaaaatatatattttttaatgcaaATTAATTTATTTCGGAAGAGGGGGCCTTAttcttacatttgtatatgatttTTTGGTTTCTCCACCCCCTTTCTCCATTGGAATGGCTGTTCCTTCACACTGCCTACTGTGCCATATTGGATGGATGTTAACGTTATCGATGTTGCAGCTGGAGTTACGAATGAAAGTTTAGATTTTGCCCTCTGCAGAGATTGGGGTTCCCACGGATTCTTCGAGGACCCTGGGGCATGGTGACGTTATTCAACAACCGGGATCCAAAAATATTTCATTTTGCAGGCCTCTAGCTACCTTAGAAACAACGTAATAAGACGATGCAGTTGCAGGCCATGGCGACCAAAGGCTGCATGAATTGTTTGTAATATTCAAGAGTAAAACAGTTAACTTTGTTTATCTGGAAATTATTTGGGAACATGAATAGCCATCCTCCGCAACGCCGGGTTGGAAATATTGGCTCCATACTCCTCACCCCGCAAGAGAACGAATGCCTCTTCAACTACCTGGGAAGGAAATGCATTACTCTGTGCACAGCGGTGGTCCAGGTGTATGGGGCAGACAGGAGCTCGTCCTGGGTGAAGAGGTGCTGCGGAGTAGCCTGTCTGATCAAGGATAACCCTCTGAGGTCCTACTTCATCAGGGTCTTTGACATCAAGGAAGGGAAAACCATGTttgaacaggagctctacaataacTTCTCAATCAACAGCTCGAGGTCCTATTTCATTTCGTTTTCAGGAGATAACTGCCAGGTAGGCCTGAACTTCGCTAGCGAGGAAGAGGCCAAGCGATTTAGAGCCGCACTGAAAGACCTACTCAGCAGACGGCAACGTAAAACGGAGAAAAGACGTGACCCTGCAAATGGCCCAGCTCTCCCTATGGCCACTGTGGACATCAAGAACCCGGAGATCAACAATGTGCGCTTCCACAACTCCCACCATCATCAAcaccaccagcagcagcatcagccaCACCACGTCAACAACATGCTGCACAGCAGCTTCAACAAGAAGGAGAAGAAAGTCAAGGGCAAGAGGAAGAAGCTCACCAAGGCTGACATAGGCACCCCCAGCAACTTCCAGCACATCGGCCATGTGGGCTGGGACCCAAACACAGGCTTCGATTTGAATAACCTGGACCCGGAGCTAAAGAACCTGTTTGACATGTGTGGCATCTCAGAGGCCCAGCTGAAGGACAAGGAGACCTCCAAGGTCATCTATGACTTCATCGAAAAGAAAGGAGGGGTGGAGGCCGTCAAGAACGAGCTCCGTAGGCAAGccccaccacctcctccctctcggggtggcccacctcctcctcccccaccccacaGCTCGGGCCCAGctcctcccccaccaccaccacccccatcgCGAGGTGGCCGGGGTGCCCCGCCACCACCTCCACCCTCTCGGGCCCCCACCTctgcccctcccccccctcccccctccaggcCTGGTGCCCTAGgagccccccctcctcccccgccCCCCAACAGAGGGGGCCACGGCCACCACCACTACCAGCCACCGCCTCCACCCTCACATGCCCCCCAGGCCCCACCGCCACCTCCCCCACCAGCAGCACCACCCTCCGGTGGCGGGGgagcccctcctccacctcctccaccacctcccccaCCTGGACCCCCGCCCCCTCCAGAGCTGGACGGTGGTGTGGAGTCGCCCCACTCACCCCCGGGCTCAGGGGGTAAGTCGGCCCTGCTAGAGCAGATCCGTGGGGGCACCCAGCTGAAGAAGGTGGAGCCACCGGCCTCCAAGCCACCGGCCACCACCGTAGGGCGCGATGCCCTGCTCGACCAGATACGGCAGGGCATCCAGCTAAAAACCgtacCAGACGGCCCTGAATCGGGCTCCCCTACACCGGCCCCCTCGGCAGGCATCGTGGGGGCACTTATGGAAGTCATGCAGAAGAGGAGCAAAGCCATCCACTCCTCAGAtgaagatgaggatgatgatgacgaAGAGGATTTTGAAGATGACGACGAATGGGATGACTAGTAAAGTTTCAAGTCCTCCTCCCCAACACAACTGACACTAAACTGATCCTAAAATCTTCCAAAAACGGACTAAAATTGAGAGTGTTCTATGATTTTGCTCTATTTATTGTTGCCTTTTTTGCTTTTATTAACCTGTGCAATACCTTGTTCATTTAATCTGTAAAGTGTTGTCACACACCCTCTGTAGAGTATCTCTGGTAACACTTTCCTGCGACTCTGTCATAGAATGCTCACATCACTGTTAAAAGCATGATATACAAATATTATAAGCTGTCATAACTGTTCATGGTAATACGCTGACTTGCTCAGGCTGACCACCACTGCATGTGACGCTGCGAGATTGCTTGTCGTACGCTAATACAAGGTGTTATAAATCACCAATGACACCTGGCGTCTGTTTAGGAGGGTGCAATGTCACGGAACGTCCAGAGATAGAAACGTATTGTGTAGAATAGATATGATTCTCGGTCCTCAAGAATAGTTCTTATTCACTTACAGTATCAGCTAACATTATATTTCCATCTGCAACGTTCTGAACACTTAGCCCTATGGAATAACACACTGCTGCTATGTCATGGTTATGACAGCCTAAAGACAGCAGGTTCAAGTAGTACGGTATCTGATGGATTAACAGTGTGCAATTCTAGTTAGGATATATTTGTTTGGTGTGTTACTTTAAATGTTCTGTTCCCCTGTCCgtaaagaaagggagaaagatggatatatatatatatatatatatgtacacacacacacacgtaacaaaCGAGAGAGGTCATTGTTGTGTTGTTAATGCAAGATAACACTATTTTCTTACCCTACTTTTCTGTACCTTCGATTTTCTTAATGAGATCCTAGTTTAGCACAGTTATTTTTTCATATGGAGGCCACTTATTAGAATTGTAAGCCCAAATTGACTGGTGTAAATGTGTTCAATGCTTCGTTCAAAGCTGTTATCTTGGCACAATTTCAAAATTGAATTTACTATAAGAGTAACAGTGCAATGTCATAGTTGTGTTCCAACAATCTACTAAAGTGATGGGGAAAACAAAGCTTACGATGTGCTGGATcagtatacagatgtaggatcttaatttgagcctgtttgctacagcaggaaaataatcctgtggCAACAGGAActgtgattttttttgtgtgtatttttcaTGCCTTTTTTTGCCCCAATTTCGgcgtatccaattggtagtagttagtcttgtctcatcgctgcaactcctatacggactcgggagaggtgaaggtcgagaaccatgcgtcctccgaaacacaacccaaccaagccgcactgcttcttgacacaatgcccatccaaccaggaaaccagccgcaccaatatgtcataggaaacaccgtacacctggcgactgtgtcagtgtgcactgtgcccggcccgccacaggagtcgctagtgcgcgatgagacaaggatatccctgccggccgaaccctccctaacccggatgatgctgggtcaattgtgcgtcgccccatgggccttccggtcgcggccggctgcatcAGAGCCTGgcctcgaacccagaatctctagtggtaCAGCCTTAGACCAATGTGCCACTCGGAAGGCCGGAACTGTACatttttatgtggattataatgaatggacatttttcatgagggaaaatcaagtctggaaATTAGAAACTTCAGAAGCcgttttaaacctcaaatatactACAAGTTAAAAATGTCCTACATTGTGGAAAAGTTCTCCAGCAACAGGATGATACAATTTAAGATCTACATCTGTATACTGCCTGCCAGTCAGTGACTAATGGAATATATAATATATgctatttagcagacgcttttatccgaAGTGATTTAGTCACAAGTGCGTACATTTTTTTACGTATGGCTGTCCTGGGAaccaaacccactatcctggcgttgcaagaGCCTTGTCTACCAaatgagctacagaggaccagagAGGATCATGGAAGCTCTTAAAGCAGCTTTTATTAGAATCCATTTATGATTGACACTACGGAAATGTCCTGCTCATTATGGGTTTACAGAGGTGTCCTGTGTTAACTTTCAGAGGGGAAATTATCACTACAAAAATGTATAACTTATACAAAAATAGGATTCATTTAAGCTTTTGTTTTGTCTCTTTTCTCTAACTTACTGTATCTGTTACAATAAATATtattctctcctccctgctggaATTAGAATAATATTTATGTTACTAGCTATTAGGTCAGTGTTCATATTCAGCAGATCTAGAAACATCTTCCAGTTTTTCTTGAACTTTTATGGGATGAATCTGTAAATGCCTCCATACAAAAGCTAATAAGGAACCAAAATTGTCATTTGCACGAAGCGTCTACAAGGCTTTGGTTTCACTATCCTAAATGCTTTCATGGTGATAATGCTGATAATGATGCCTGTGAAACTCAattttacagtatatacagaagTAGCCAAATGGATGATGTTTGAACCGTATTGCCTGTCTCAATTTCTACCATCCTCCACCGAGGTGATTGCTGCATTAAGAAACCGTAATACTGACATCAAACCTTCAGAGGTTGGAAAAAGCAATGGAAATACTAAATTGTATACTTAAATAAATGTTAATATTTACAGAGA

Function

NR:

description
neural Wiskott-Aldrich syndrome protein-like, partial

GO:

id name namespace
GO:2000601 positive regulation of Arp2/3 complex-mediated actin nucleation biological_process
GO:0003779 actin binding molecular_function

KEGG:

id description
K23612 WASL; neural Wiskott-Aldrich syndrome protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968916.1 False 4748 mRNA 0.47 10 12527612 12545633
XM_036968915.1 True 4771 mRNA 0.47 11 12527613 12545633

Neighbor

gene id symbol gene type direction distance location
LOC110521334 LOC106584563 coding upstream 104034 12415118 ~ 12423578 (+)
pot1 pot1 coding upstream 125809 12353037 ~ 12401803 (+)
grm8b grm8 coding upstream 217963 12114133 ~ 12309649 (+)
LOC110522739 LOC106584566 coding upstream 435794 12087010 ~ 12091818 (+)
LOC110521328 LOC106584569 coding upstream 442676 12080362 ~ 12084936 (+)
slc13a1 slc13a1 coding downstream 41340 12586973 ~ 12609390 (+)
cadps2 cadps2 coding downstream 76701 12622334 ~ 12890397 (+)
LOC110521342 LOC106584552 coding downstream 347687 12893320 ~ 12896797 (+)
aass LOC100136272 coding downstream 360516 12906149 ~ 12921316 (+)
LOC110521345 LOC106584548 coding downstream 511397 13057030 ~ 13073884 (+)
G2200740 NA non-coding upstream 4672 12522724 ~ 12522940 (+)
G2200739 NA non-coding upstream 5295 12521982 ~ 12522317 (+)
G2200737 NA non-coding upstream 7343 12519676 ~ 12520269 (+)
G2200728 NA non-coding upstream 20593 12506728 ~ 12507019 (+)
G2200727 NA non-coding upstream 22350 12504885 ~ 12505262 (+)
G2200750 NA non-coding downstream 15239 12560872 ~ 12561073 (+)
G2200760 NA non-coding downstream 31802 12577435 ~ 12577788 (+)
G2200873 NA non-coding downstream 198175 12743808 ~ 12745889 (+)
G2200875 NA non-coding downstream 207048 12752681 ~ 12753196 (+)
G2200879 NA non-coding downstream 213192 12758825 ~ 12759120 (+)
LOC110521323 LOC106561036 other upstream 730677 11683849 ~ 11796935 (+)
G2198837 NA other upstream 1382940 11144213 ~ 11144672 (+)
LOC110521306 LOC106584595 other upstream 1649823 10799756 ~ 10920504 (+)
G2198247 NA other upstream 2303495 10221650 ~ 10224117 (+)
G2197955 NA other upstream 2907325 9619867 ~ 9620287 (+)
G2202196 NA other downstream 655505 13201138 ~ 13201491 (+)
LOC110521355 LOC106584515 other downstream 746603 13292190 ~ 13301806 (+)
tnnt3a LOC100136357 other downstream 890175 13435735 ~ 13462187 (+)
G2203653 NA other downstream 2013814 14559447 ~ 14567103 (+)
G2203973 NA other downstream 2726412 15272045 ~ 15273733 (+)

Expression

LOC110521338(LOC105018628) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
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LOC110521338(LOC105018628) Expression in each Bioproject

Bar chart with 21 bars.
LOC110521338(LOC105018628) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network