slc13a1 (slc13a1)


Basic Information

Item Value
gene id slc13a1
gene name slc13a1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 12586973 ~ 12609390 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598837.2
GTGAGCGCCTGAAGAAATGCCTTTAGTCAATTCAACACTCACCAGAGATGACTAAGCTGTTTGACATGATGAAGAGGTTTCTGAGAGTTGTCTGGAACTACCACAATCTCCTCATCATCATACTCACCCCTGTGCTGCTTCTGCCTCTTCCACTGGTCATCCAAGGAAAGGTGTCAGAATGTGCGTTCGTACTGTGTGTCATGGCAGTGTACTGGCTGACAGAAGCCCTGCCACTGGCAGCCACAGCTCTGTTCCCAGCCTTGCTCTTCCCTTTCTTTGGCATCATGAAGTCCTCTCAGGTGGCTGGAGTGTACTTCAAAGACTTCCACCTGCTGTTGATCGGAGTCATCTGTCTGGCAACGTCTATAGAGAAGTGGGGTCTCCACCGGAGGATAGCACTTAGTCTGGTCACTTTGGTCGGTGTCAATCCTGGATGGCTGATGTTGGGCTTCATGAACAGCTGTGCCTTCCTATCCATGTGGGTCCAAAACACATCCGCCGTTGCCATGGTGATGCCCATCGTTGAGGCGATCATTCAGCAAATCTTGAATGCAGAGGGAGAAGGTGAGCAGCGGCAGGCAGCAATGACAGGCACCAGCAACCTTGGCCTAGAACTGGAAGAGACTGAGGGACCGTGTGAGAAAAATGAAGAGCCAATAAGAACAAATAAGGAACCGGATGAAATGGAGTACACTATTCCAGAGGAAGCACCCTCTCAGACCAATGTGATTGGGCAAAAGATAGAGGGCCGCTACCGGAGTAAGAGAGAACACATGATGTGCAAGGGGCTGTGCCTAAGCATTACATACTCTTCCTCTATAGGAGGGATTGCCACCCTTCCTGGGACCTCCCCCAACCTCATCTTTTCAGAGTACATCCATCAGTTTTACCCAGAATGCACCTCTGTAAACTTTGGAAACTGGATCGTCTTGTGTCTGCCAATCAGCATCATTGCTTTGCTGTTGTCATGGATATGGCTGCACTGGATGTTCATCGGCTCAGACTTCAGGGTGCTGTTCCGTCCTAGTGGAGAGCGCTcggagagagagactgcaacagCCAGAGTCATAGAGGAGGACTACAACACGCTGGGTCCTACGAGTCCCCAGGAGGTTGTGACCGCGTTCATCTTCATCCTGATGGTGGTGCTGTGGGTCTTCAGAGACCCTGGATTTATGCCAGGGTGGGCCTCAATCTTCCTCCCTGAATATGCGGGCTACATCAGTGACGCCACCGTGGCCCTACTGCTGGGGCTCGTGTTCTTCATCATGCCAGCACACAAGCCTTCTGCAGATAAACAGGGTATCAAATATGAGGCCATGATCTCATGGAAAGAGTTCCAGGCCTGTATGCCATGGGAAGTCGCCCTACTTGTTGGTGGGGGCTTTGCACTTGCTGAGGGCACCCAGgTGTCTGGTCTGTCCTCCTGGGTGGCAAACCTGCTATCTCCTCTGGGGAGCCTCCCCATCATAGCAACAGTCACCATTGCCTGTGTCCTTGTCACCTCAGTCACAGAGCTGGCCAGCAATGCAGCCACCATCACCATCTTCCTCCCTATCCTTGCCCCTCTGGCCGAAGCTATCCATGTGAACCCACTCTACATATTGATACCCACAACCCTCTGCACATCCTTCGCCTTCCTGCTTCCTTCATCCAACCCTTCCAATGCCATTGTGTTTGCCTACGGCCACCTCACCACCACGGACATGGTGAAGGCGGGGATTGGTGTGAATGTAATCAGTGTCCTTGCAGTATTATTGGCTGTTACAACATGGGGGATTCCACTGTTTGACCTGGATACCTACCCTGATTGGGCACCTACTCCATCCACGTCAAACGTCACTGGATGGTGAAATCAATCAGGAAAACACTAAATACGGGGCCATAGAGTGTTTGTCTAATGCTGGGTTCATGCACTCTTCAGAAGTTGGACACTGTACTATCTGACTAGAAAAGTAAAACGTACAACCATATTACCACAATGTTCCCCAATTGAATTTCCAACATGAAAGCTGATAAGTAATGTAGTTTTGAGTTCAGGAGCTTTCTAGGAGAAATCACTACATCTCCAATAACTGATGATAACAGCATCACTGTCCGGAAAATACTTAAATGGTCAATAGCAGAATGTATCCTTCAGTTGCACTTCTAACCCTCACCTCAAGCTTAGAACCCAGGAGGACTGGTGGGGGCTATGTTAGGAACCATTCTAATAGGGAGTTAGGGCTAAAAGGTGAGGATTCGCCATGTGCCAAAGTGTTTAATTTATTGGACATGTCACTGATCATTTAACACAATGGCAGGGGAGACCATTTATAAAGAAATCAACTTTGTCAGGAAATACTTACAATAAATGTAATGAATCAA

Function

symbol description
slc13a1 Enables sodium:sulfate symporter activity. Acts upstream of or within sodium ion transport and sulfate transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; eye; and pleuroperitoneal region. Orthologous to human SLC13A1 (solute carrier family 13 member 1).

NR:

description
solute carrier family 13 member 1

GO: NA

KEGG:

id description
K14444 SLC13A1_4; solute carrier family 13 (sodium/sulfate cotransporter), member 1/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598837.2 True 2367 mRNA 0.49 15 12586973 12609390

Neighbor

gene id symbol gene type direction distance location
LOC110521338 LOC105018628 coding upstream 41340 12527612 ~ 12545633 (+)
LOC110521334 LOC106584563 coding upstream 163395 12415118 ~ 12423578 (+)
pot1 pot1 coding upstream 185170 12353037 ~ 12401803 (+)
grm8b grm8 coding upstream 277324 12114133 ~ 12309649 (+)
LOC110522739 LOC106584566 coding upstream 495155 12087010 ~ 12091818 (+)
cadps2 cadps2 coding downstream 12944 12622334 ~ 12890397 (+)
LOC110521342 LOC106584552 coding downstream 283930 12893320 ~ 12896797 (+)
aass LOC100136272 coding downstream 296759 12906149 ~ 12921316 (+)
LOC110521345 LOC106584548 coding downstream 447640 13057030 ~ 13073884 (+)
bet1l bet1l coding downstream 502317 13111707 ~ 13114914 (+)
G2200760 NA non-coding upstream 9185 12577435 ~ 12577788 (+)
G2200750 NA non-coding upstream 25900 12560872 ~ 12561073 (+)
G2200740 NA non-coding upstream 64033 12522724 ~ 12522940 (+)
G2200739 NA non-coding upstream 64656 12521982 ~ 12522317 (+)
G2200737 NA non-coding upstream 66704 12519676 ~ 12520269 (+)
G2200873 NA non-coding downstream 134418 12743808 ~ 12745889 (+)
G2200875 NA non-coding downstream 143291 12752681 ~ 12753196 (+)
G2200879 NA non-coding downstream 149435 12758825 ~ 12759120 (+)
G2200961 NA non-coding downstream 288163 12897553 ~ 12897828 (+)
G2200965 NA non-coding downstream 292747 12902137 ~ 12902472 (+)
LOC110521323 LOC106561036 other upstream 790038 11683849 ~ 11796935 (+)
G2198837 NA other upstream 1442301 11144213 ~ 11144672 (+)
LOC110521306 LOC106584595 other upstream 1709184 10799756 ~ 10920504 (+)
G2198247 NA other upstream 2362856 10221650 ~ 10224117 (+)
G2197955 NA other upstream 2966686 9619867 ~ 9620287 (+)
G2202196 NA other downstream 591748 13201138 ~ 13201491 (+)
LOC110521355 LOC106584515 other downstream 682846 13292190 ~ 13301806 (+)
tnnt3a LOC100136357 other downstream 826418 13435735 ~ 13462187 (+)
G2203653 NA other downstream 1950057 14559447 ~ 14567103 (+)
G2203973 NA other downstream 2662655 15272045 ~ 15273733 (+)

Expression


Co-expression Network