LOC110521342 (LOC106584552)


Basic Information

Item Value
gene id LOC110521342
gene name LOC106584552
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 12893320 ~ 12896797 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598838.2
ACAAGGGGACCTCAGATTTGCCAAACACTTTACAGTTGAACAAGACTGGCCACTAAAGAACACCTCATTCGCGACGCGGGTGACACACGCACCCATAGCAGTAGTAGAGGGGCCACAAGTGGAGAATTGATGGAAGAGAATTTAGCAATTATCTACTTTTTCTTCTTAGATGGTAACGATTGGTGAGGTTTTGGCTGTATTGACTCAACACGACATATTGAGCAGTCCCGCAAGACATAAGTGCTGATTGTCCAGAATCAACGGGAACAGTGAGGGGGCTTGCGTCGACCCAGAGTGCGCCGAATGATGTCCTTTCTAGCGGGGCAGTGAGAAGGAATCAAAGGTATCTACAAAAGGAGCTGTAACCTGGCTTTCCAAAAGGTGTCGTTTTGAAAGTCATGGACAGTGCGCTCTACCACTCAGCGGGAATTTTCGGCTCCCCCTCGGCTTCTGAAAACTTGACTGCAGGCGGAAAGATGATCACCCCCACCAAGCCTCTCGCTTTTTCGATCGAACGGATTATGGCCAGGACGCCCGAGCCAAAGTCGATACCTTTCCCCAACCTATTCCATCACACTCCGGTGGGTAGGCCTGAAGCAGACCCGAAGCAAGCGCTCAACATGACTTCATCATCACTACATTGCATGATACCATTCGTGCCACTGGCATACGAACCGGGTCATAAACTAAATATTAATGGATTGGATACGAGTCAATTTGAGGCTTCCTCATATAATTCAAATGAGTTGGTGGGCATTGGTTTGAACTATAAGAACGAACAACCAGATGTGAGCCCGTCGGTGGGACAATACAAACTCTTTCGACCCCGGGTGGTGAACCAGTCGTCTTTTCATGCCATGGGGGCCGTCTGCTACCTGAACTGCGGGGAGAGTGCGTGCCCACCCCCAGCCAGCATCGTAAACATCCACCCCATGGCCTCCTACTTTCTCAACACGCCGCTGCAACATGCACGCCAGAGAGCTTTTCTCGCGGAGAAAAATAAAGTGTCTCACTGCACAGACAGATACCCATCCGGAGTTGCATTTAAAGACATTTCCCAAACTCAACTCCATCACTACATGAAAGAGAGTGCACAGATTATATCCGACAAACTATTCAAGGGCTCTTCCAAATTGAACAGTGCTTGCGCAAGCGGCAAACCCAAAGTATTCACCTGCGAGGTTTGCGGAAAGGTGTTCAATGCCCACTACAATTTAACGCGCCACATGCCCGTGCACACCGGAGCGAGACCATTCGTCTGCAAAGTATGCGGCAAGGGATTTCGACAAGCAAGCACCCTTTGTCGCCACAAAATTATTCATACTCAGGAAAAGCCTCATAAATGCAACCAGTGTGGAAAAGCGTTCAACCGGAGTTCAactcttaacacacacacacgaatccATGCAGGTTACAAACCCTTCATCTGTGAGTTCTGCGGTAAAGGATTTCATCAAAAAGGTAACTACAAGAACCACAAATTGACGCATAGCGGCGAGAAACAGTTCAAGTGTAACATCTGCAACAAGGCCTTCCACCAAGTGTACAACCTGACGTtccacatgcacacgcacaatGACAAGAAGCCATTCACGTGCCCGACTTGCGGCAAGGGATTCTGCCGGAACTTTGACCTGAAAAAGCACATCCGAAAACTACATGATCTCTCTGGCTCCAAATCCCCTGCCACTCTCGTCACAAGCGAAACACACTAAAAAGTTCCGGAGCTAAAACGCCAGCGGTTGCGCCTTTACGCTTATTTGCTCAAATCTGGAAATAAGCGCGCGAGTTTAGAAGATGTTGtggacatttacattttagtcatttagcagacgctcttatccagagcgatttacaggaccATTCTATTAGTACATATTTTCCTTGAATTTTACATTATAATGTCATTATTCTGTTGTTTTCTTTCAATCTCAGGATTACTGTAAAATGTCAATATTTATTTGAAATTGTAACACAAATAATTTAAGAGAATAATTGAAGACTATATACAAATTATTTTTTGTTGTGATGAGTGTGGTAGCCTACCCCATTTTGTATGATGCCCTTGCTAAAGTTACATGATTTGCCAACATTTGTGTATATGCAAAGTTTTCAGTGTTGGGGAATAGCGAATTTcatgtagttcaactagttaactacattttgcataagcttggtggtagttgaccTAAATTCAAATCTAGGTAGTGTTTTAAGTAGTTAATTACTTATTTTTTTGTGCCAtatagcggtgtagctaactactggaactacacactacattttttgctaaaataaaataTGGTTGAAGTAGGCAATCATTTCCTTTTTTTGCCAACAGATCGGTTTAAGTCTCACTTGAAACCtcgtttttgtgtttaataggctaaattacacattttgttaaccCCAATGTGATCacttcttgcaatttgtagtgcATGACATGCATTTCAGATTTACATATGATAGTTTTTCACAAAGTAGgttggatgtagtgaactactttttcaaagtaacttcagttaagtaaactatatttaTCTTAAGGGcagctttagtgtagcttaacttaagtaattggtagcttggtaaactatattttctgactagcttccccaacactgaaAGTTTTGCAAAAAAAACTACGTCTTTGACACGTATAGGCTACATTGTTAAGCAGGTGCACATACTAAATAATGTAAGTTATGAAATGAAAATAATGACAATAAAATGAAACTGTGTATATGT

Function

NR:

description
fez family zinc finger protein 1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030154 cell differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K24502 FEZF; Fez family zinc finger protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598838.2 True 2751 mRNA 0.43 4 12893320 12896797

Neighbor

gene id symbol gene type direction distance location
cadps2 cadps2 coding upstream 2923 12622334 ~ 12890397 (+)
slc13a1 slc13a1 coding upstream 283930 12586973 ~ 12609390 (+)
LOC110521338 LOC105018628 coding upstream 347687 12527612 ~ 12545633 (+)
LOC110521334 LOC106584563 coding upstream 469742 12415118 ~ 12423578 (+)
pot1 pot1 coding upstream 491517 12353037 ~ 12401803 (+)
aass LOC100136272 coding downstream 9352 12906149 ~ 12921316 (+)
LOC110521345 LOC106584548 coding downstream 160233 13057030 ~ 13073884 (+)
bet1l bet1l coding downstream 214910 13111707 ~ 13114914 (+)
deaf1 LOC106584542 coding downstream 220770 13117567 ~ 13148519 (+)
cdhr5b LOC106584514 coding downstream 340172 13236969 ~ 13250964 (+)
G2200879 NA non-coding upstream 134200 12758825 ~ 12759120 (+)
G2200875 NA non-coding upstream 140124 12752681 ~ 12753196 (+)
G2200873 NA non-coding upstream 147431 12743808 ~ 12745889 (+)
G2200760 NA non-coding upstream 315532 12577435 ~ 12577788 (+)
G2200750 NA non-coding upstream 332247 12560872 ~ 12561073 (+)
G2200961 NA non-coding downstream 756 12897553 ~ 12897828 (+)
G2200965 NA non-coding downstream 5340 12902137 ~ 12902472 (+)
G2200967 NA non-coding downstream 6546 12903343 ~ 12903560 (+)
G2202043 NA non-coding downstream 156970 13053767 ~ 13053972 (+)
G2202046 NA non-coding downstream 158924 13055721 ~ 13055936 (+)
LOC110521323 LOC106561036 other upstream 1096385 11683849 ~ 11796935 (+)
G2198837 NA other upstream 1748648 11144213 ~ 11144672 (+)
LOC110521306 LOC106584595 other upstream 2015531 10799756 ~ 10920504 (+)
G2198247 NA other upstream 2669203 10221650 ~ 10224117 (+)
G2197955 NA other upstream 3273033 9619867 ~ 9620287 (+)
G2202196 NA other downstream 304341 13201138 ~ 13201491 (+)
LOC110521355 LOC106584515 other downstream 395439 13292190 ~ 13301806 (+)
tnnt3a LOC100136357 other downstream 539011 13435735 ~ 13462187 (+)
G2203653 NA other downstream 1662650 14559447 ~ 14567103 (+)
G2203973 NA other downstream 2375248 15272045 ~ 15273733 (+)

Expression


Co-expression Network