LOC110521347 (LOC106584546)


Basic Information

Item Value
gene id LOC110521347
gene name LOC106584546
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 13094306 ~ 13103545 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598847.2
TATTTATAGTGCTGGCCCTTGCTACAATGTCATCTGTAACTCGAATCCATCTGTTTAGTCACAGCATGTTGAATGTCAGTTGCCAGAGAAAAGCAGAGAACTCGGCTCTGCGATTCCCCTTCACTCTGTCACTAGACAGCCCAATGGAGCCTTCTGCAGTCGAACCAATACCCACTGCGGTCAGCAGCCTCCTGGGTGTCCCAGGGCTTATCACCTGGGATGGGGATGAGGCGAACGACGCGGAGGTGATCGGTGGCATCAGGCCcaagtcctctcctctcccacggAGAAGGAGCGCCAGTGATTTAAAGGACTGTGAGCTCGAGCTCACCCCATCCAGCTCTCGGAGAGTGTCCTTTGCGGACGCCCTCGGCCTAAACCTGGTGAAAGTGAAAGAGTTTGACTCGTGGGACATAACAATCCCGCTGAACTTCAATgccatggagggagagaaagaggtagaggaatACTACTTGTCCTCATTATACACTCCTTCACCATCCCAAGAAGCCATGGTCCTGAGAGTTCAGGAGCAGAAGCTAGAGCTGGAGAGCATTGAGTTATTCTACCAGACTACAATACTATGGGGGGTGGTCCGCGTTCTCAATGTCTCCTTTGATAAGATGGTGTACATCCGCACCTTGCTGGATGCCTGGGCCACGCACTTTGACCTGCTGGCAGAGTACATACCAGGGTCCAGCGATGGAGACACTGACTGCTTCTCATTCAAGCTCACCCTGGTGCCCCCCTTTGGGGAAAAGGGGGCCAGAGTGGACTTCTGTCTCCGGTACGAGACCCCTGTTGGAACTTTCTGGGCCAACAATAGTGACCAGAACTATGTGATGTTTTGTCACCAGAAAATCAAGGAGTCGAAAGAGAAACCAGAAAAAGACCAAAGCGGGCGCAGGAAAAGCACCCTGAAAGCCATCAGTCATGACTTTCCCTGTGATGAAAACTGGTCGTCAACCAATGCTGAATCTTCAGACGTACACAACCGTGGAGGGAAGATGGCTAGTATGAACACTTCTGAGTCTCAGTCAGGAGCACTCCAAGATGATCGTCAGAAATTAATGGTTGAGAGCAGCCGGAACTCCAGCAGAAGAAACCGACGAAAGGCAGCACGATTGGCGAAGGTGCGGGACTACTtcacccagagagaggatgagacccaagagaaagagaagggagcaGTGGAACCATCACAGATCCCACAGGAAAAGCTTTCAAATAGGCCTGAGGTACAACCACTGCCACCACAGGGCAGGAAAGGGTTTGGGCTGCAGGCAACAGATTCTCTGTCTACGTGCAAACTGTCTCCTGGTATCCCAGACAGCACGTCTTGGCAGGAGTCAGTGAAACCTGAGAAAATAGACCCAACGTTCCGATCAGCCCCATCAGAGCTGAGAGGGAAACAGGCCTCACTGATCCCCAGCAGCAAGTcagattcaactgatcaacctgtTGCTGTGAGCCAAAATGGTGATACGTCTGTTTTCAGTGTGGAGGGAAGGGCTCTGATGCAGATGGAAACGGAGAAGGGTGGATCTGCCATCAGCACAGACATAACACATTCAGATAACATTGTCAGGTTGGAGAACAGCACAGCAGGCCCAGTCCCAGGCAGCCAGACCAATAGCTTTATGTTTGGTAATGTTGTGGCCCCACCATACTGTCAGGGGTTTGGTAGAGTGGAGAGTGGGAGTCCGAGCTTCACCCATAGAGGGAATCGAACAAGTGGTCAATTGCATGAATGGGATTCAACAGCCTACACAGCCCAGAGTTACCCATCCACAGAGGAAGTAGAAACTCACTCCTGTGTTTCAGCTGATACTCGTGGAACACCTGATGACAAGCCTGTAGATCAACAGGGGTCTCTTAAATCAAACCCAGAACACTTCAGCTCTGGATTAAGTACAGAAAGAGAGTCTGAACCTAAACTTCTGTCAGAAGAGGCAGGAGGTCTTCTCAGGACTCACACTGCCCTGaacactgctgctgctctcaGGGCACAAATCCTCAATGTGAACTCAGGCCTCCAGGGGTCTGAGGAGAACATTCTGCCTCCTCAGACCCAGATGCACCAGGACAGTAAGCTTTTACAAACACAAACCCCATTACCAAACACAACACCTTTACAAACTCCAGTGGACACAACACTTTCACAAACACAAACTCTGATAGACGCGACACAAGGCAGTTTCCTACAGTCACAAACTGAAATGGGGTCAAAGCATGTCTCTGCTGAGATGACTCTGCAGGGGGCCAGTTGTGGATATGAGAGACCTAATGAGTCAGATGAAATGGAGAACCCTCTCACAGATGAATGGTCAACAAGCCCATTCACAGAAATAGTAGACACACCTATAGCCATGCTAGAGCCTGTGGATGCTGACCTGAAAGTTCACACTTCAGAGACCGAGGAAAAGATCACCACTGTGCACCAAAACTTTGCTGTGCCCCGTACGGACACACTGGAGGAAGAAACCAGTGGGACAGCATTGAAAGATGATTCCATTGTCATTAAGGAATGGACATCATTGGAGAAATTAATGATGAGAAAACAAACAGATCAAGTGAAGGATGAACTATCATTTGAAGTGTCAAACATTTTATGCAATGAAGAAAACCGGCATTCTATTGACAACAAGGATTATGATGATGTAGATGGAGAGATGTCAAACTATGTGAGGTATGATTATGATAAAGACACTGACAAGGGCTCAAAGTTCAAAGAAGAAGATATTCATAAGGAAGTTGAACTGGTAATGATGAACAGTAAGAAGTATTTAGTTCCTACAAAGAAGGAGATAGACACAAGTAATGGACAACCATTTCTAAAGAAAGATCGAATAGTAAAAGACTGGGAGGGGACTGTGGAAGAGGAAGACACGATGGGGGAATATGTGGAGGGGGACGAATGGGAAATAGAAGAAGATGAGATAGTTGTGGAAGAGGAGATGGTGGTTGGGACAAAGAAgttggaggagacaggggaggtggaggaaacagaggaggaagtggaaaaGGAGAAAGAAGAAATTATGATACGGGAAAAGATAGAAGGAATGGTGAAGGATGGAGCGAAGGtggtgaagggagaggaggaaatggAGAAAGAAATGGAGAAGGTGGTAGttgaagaagagatggaggatttagaggaggaggatgttaagTGGATAGAGTGGGAGGAAGATGAGattgtagagggagaggaggatattgtagaggaagagaaggaggaggaagagattgTAGAGGAAGAAACTGCAGATGTAGAAGTAAAGGAAATTGTAGTAGATGATCAAAATGAGTTGGTAGACGAGTTTAGCATGAACATGGACAATATGAATGAGGGTGAGGGTGGTAAGAGCACAAATGTAAAGGTCACAGAAAAATCTAGCCCAGTAGATAATACATTAATGACAAATGAAGTGTCAAATCCTTGCCACAAAGAAACTATCAATGACGTAAGGCTGGACACCAAGCATCCTCGAGATGAAGAAATGGAATCTATCAATGGAGAATGGGAGACCTGCATTCAATCGGATAAATCTGTCAGTGGGAAAGAGGGTGAAGGGGAGGGCGAGGAGGACCATGCATCTACAGAGTCTCTGTCAGAGGATGAGATAGAATTGTACATGCGCAGTCTAAGGGCAGTGCAGAAGCTACGAAACAAGGACTTGGCCTTGAGTCTTGGGAAACGGCCCTCCATAAGCAGAAGAGGCAGCAAACCGTCCATGATGTCCATCAGAGAGTCTGTGGATGAGGAGCACCCGAGCAACCAGGAAGATCagccagacacagagacagtggagCATCAGCCTACAGGTACACTGCCCCTAGTGGAAGGAGGGCAGGATAGCACCAGGAGCAATATAATGTGGTGGGGAGAATCATTTTCTTGGCATAATCCCTCAAAAACACTGTTATACACCACCCTGTTTGTAGTGTTCTTTTTTGCTGCATACCATTAGGACTTTCTGGTCTGTTTTAGACAGGCTGGTTTGTCAGGGGGAGAAACAGCCAATGATAATAAATAATACAACAGGTTGAGACCtgtgaaaatatatttcagtGTCTATAAAAGTGCACGACAATTAAGTTTCATTATTTGTCATTATGCCTCATCTCTAAATATAGCCTCTAAATAGATGTTAAACAATATAATTTAAGAAGCATGTGCAGTGGCTGATAGAGAAAACAGATCTGGCAATAAGAATAGACTATAGATAGTCTTGACCATTTGGGACCCGTTGGCAATTTCGCTCAGGACAGGTTATAGCCAAGACTCAatcaatattttgttttgtcttatttatTGATATGGATATAGCCTCTGCGTGATGGGATTGTGTAACGTAAATGGTTTTAACAAGCCTTCTTACAGAGTGGAATTCATTAATACAACAGTCAAAAGGCCTAATATAAGGCCGACAGTCTGTGCTCCCAAATACAGGAAAAAGTGTGATTCATTAGTTTACATGATCACTACAGTAGCCCCACGCGGCTATACAAATGTATTATGCAATAATATGGCCATTAAATAACACACAACAGCATGGCATATTCAGATAGTGGAATAAGCCTAaatcatatttactttctattttGCAGCTCAGGCGGTTTTCCAGACAAGGCTCTTCTGTGTCTTTATAGTATCATTCTCAAACAAGTCATTTTCTGAAGCCCAAGCCTATAGTATGCCATCTACTGATATAACGTCATTATCGAATTGCGTTCTAAAACAAGCTCTAGACATTTATTTTGGAAATGAAACCGGAAGCTGCAAAGCATTTCTAACGTCTGGGCTAGAGTTCCTTGATTGACTAGTTAACTTCGACTAGCTACGTTCGGTTCGGTTCATGTCCTTTGCAGATGCCACATTCCTGACAAAGGTTTGTACACATAAAAAAGATCTGTAACCGAGTAAAGGGAGAGGTAATGTAAGAATTGATAGAATTCATTGTCGTAACATAGGGTTTGTACATTTACAGATCTAATTGAACAGTTACGTTCCAtgtgaaaatatatttcagtGTCTAAAGTCCACAATTAAGTTTCATTATTTGTCATTATGCCTCATCTGAGACTACATGTAGATGACACAAATGACAAAAGGTAACCATTTTTGGTAAAATGATGTGGGTAAAAAGTAGAATATAAATGTTGACAGCAAATAAAGACTTTGAATTCAGTATATTCCTCGTTCTATCCAGATTTGATCAaagtaaatgtatatattttttaacattcTTATTAAAATTATATTAACAGGTGAGTGTGTTTTATAATTAACTTATGAGGGTCAGTTAGTTTAAGGCAGACCCTTCAATAGAGCACACAATATTATTTATCCAATATAATGTTTTGTGACGTTTCTACATATTGGCCATACTACGGTTGCATCTTGTACAGTACGCTGTTTGTTTGAGCACAAATTAGTTCAAAGCCCTGTGTTCAAAtaactgttcttgtctattaatgttctgtattatgtcatgcttCATGTTTTacgtgaaccccaggaagagtaatggGGATCCTTATAAAATACAGAATACCCAGTTACAAGGCTGTGGACCATTGCTTGGTGTGGTTACTGTTAACTTTTATTGCATTATTTTATTTGGTGTAAATGAAGCTGATTTTAGATGTATTTTGTACCAATGCCTCCAGATTTATAATAgccatgtacagtatgttaaataTGGTTAACAAAAATTTTATATGAATCTCTTTTTCTGATAATATACTACAGTCAAACGGTCATTTCCTACAATCTTTCAACAAATAAAGCAAAAATAAAACCTAACATACTATAATTGACCACTATGCATACATACACTTGAgacacagggtagcctagtggttagagcgttggactaatgactggaaggttgcaagttcaaatccccgagctgacaaggtacaaatctggtcgttctgccactgaacaggcagttaacccactgttcctaggccgtcattgaaaataattatttcttcttaactgacttgcctagttaaataaaggtaaaataaaacatttagaacACATCTGAACATTTCCCACAATGTGACTTATACTGTATGCAGAACTGTTATGATGAAGCAGGGGCAGACTGGGACCATAAATCGGCCCAGGTATTTCTGACACTGTCCCACCAGGGTCACATGCCGGTTCATGTGAAATGGGACAGCAGCCCCTTAGCCAAATAATGATAAATCTGCACCAGTGGAGGCTGTCAAGGACTACctactgggcacaaactggttgaatcaatgttgtttccacgtgatttcaatgaaattacattggaCCATTGTGGAATATTctttgaattgacatctgtgctcAGTGGGTAGTTGGCGTTGTATTTAAGCAGAAGTTTAAGTCTCTAATATCCCAGTGGTGATTTGCTCTCATCCAGGCTTTTTAAGGCTTTGTAATGACACATATCTTTCCTGTACTCTGGTACCTTCTTTAAATACTGTATTGCGCCTACTAAAATCTGTCAATCTGCCATTGAGCAAGGCAAGCCGTCAATAACGGCTGATTCCTGGCCGTGGCCCCACTCTCCAAGGGTGTCTCCAggggagtgggatatgcaaaaatcACATTTTCATTTCACACCACACActtgtacaggttacagacttgTACGTGTGTGAAAAatgacaaatataagcacccttatttgacctttgacctgtagAGGCCCCCAACTCCCCTGTATGAGGTTTACTCTTGGTAAATATACAGATTGGTATGGTTAAACATTTGAGAAGTTATGAAAGGGATGCATACCTCACAGTAAGATTACAACGCTATCATGTGTCAATGTTAATGAACGGTTTATAGGGAAAACAGAAAGTCTTAAAACCATAGTCCACTCCTTACTCCCATCAGCTTTAGACAGCATTGTCTTGAGATTCAAACTGTGCATATTTGTTTTTCTGGTGTgtcaatatgtctgtcttggctGTGGTCGGATAAGATATAGACTCAGGTGCCTGGTTCTTATCTGTTGAAATGTTTGTCCTTCCCTTTAACAATATGAATAAATTGACAgcaa
>TU2519574
TGGAATATTctttgaattgacatctgtgctcAGTGGGTAGTTGGCGTTGTATTTAAGCAGAAGTTTAAGTCTCTAATATCCCAGTGGTGATTTGCTCTCATCCAGGCTTTTTAAGGCTTTGTAATGACACATATCTTTCCTGTACTCTGGTACCTTCTTTAAATACTGTATTGCGCCTACTAAAATCTGTCAATCTGCCATTGAGCAAGGCAAGCCGTCAATAACGGCTGATTCCTGGCCGTGGCCCCACTCTCCAAGGGTGTCTCCAggggagtgggatatgcaaaaatcACATTTTCATTTCACACCACACActtgtacaggttacagacttgTACGTGTGTGAAAAatgacaaatataagcacccttatttgacctttgacctgtagAGGCCCCCA
>TU2519575
AATAATATGGCCATTAAATAACACACAACAGCATGGCATATTCAGATAGTGGAATAAGCCTAaatcatatttactttctattttGCAGCTCAGGCGGTTTTCCAGACAAGGCTCTTCTGTGTCTTTATAGTATCATTCTCAAACAAGTCATTTTCTGAAGCCCAAGCCTATAGTATGCCATCTACTGATATAACGTCATTATCGAATTGCGTTCTAAAACAAGCTCTAGACATTTATTTTGGAAATGAAACCGGAAGCTGCAAAGCATTTCTAACGTCTGGGCTAGAGTTCCTTGATTGACTAGTTAACTTCGACTAGCTACGTTCGGTTCGGTTCATGTCCTTTGCAGATGCCACATTCCTGACAAAGGTTTGTACACATAAAAAAGATCTGTAACCGAGTAAAGGGAGAGGTAATGTAAGAATTGATAGAATTCATTGTCGTAACATAGGGTTTGTACA
>TU2519576
CGAAGGtggtgaagggagaggaggaaatggAGAAAGAAATGGAGAAGGTGGTAGttgaagaagagatggaggatttagaggaggaggatgttaagTGGATAGAGTGGGAGGAAGATGAGattgtagagggagaggaggatattgtagaggaagagaaggaggaggaagagattgTAGAGGAAGAAACTGCAGATGTAGAAGTAAAGGAAATTGTAGTAGATGATCAAAATGAGTTGGTAGACGAGTTTAGCATGAACATGGACAATATGAATGA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106584546

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598847.2 False 7079 mRNA 0.43 4 13094306 13103545
TU2519574 False 399 lncRNA 0.43 1 13094657 13095055
TU2519575 False 461 lncRNA 0.38 1 13096395 13096855
TU2519576 True 274 TUCP 0.42 1 13098030 13098303

Neighbor

gene id symbol gene type direction distance location
LOC110521346 LOC106584547 coding downstream 6722 13078925 ~ 13087584 (-)
LOC110521343 LOC106584549 coding downstream 71650 12928324 ~ 13022656 (-)
LOC118945808 LOC106584557 coding downstream 471435 12598825 ~ 12622871 (-)
LOC110522740 NA coding downstream 579111 12508886 ~ 12515195 (-)
LOC110521337 LOC106584561 coding downstream 619134 12461168 ~ 12475172 (-)
ticam1 LOC106584543 coding upstream 4819 13108364 ~ 13118698 (-)
drd4a LOC106584511 coding upstream 55957 13159502 ~ 13186705 (-)
LOC110521353 LOC106584518 coding upstream 164439 13267984 ~ 13270121 (-)
prr33 LOC106584523 coding upstream 323106 13426651 ~ 13435077 (-)
myod2 myod2 coding upstream 355789 13459334 ~ 13461444 (-)
G2202137 NA non-coding downstream 2577 13091525 ~ 13091729 (-)
G2202125 NA non-coding downstream 19770 13074227 ~ 13074536 (-)
G2202121 NA non-coding downstream 34002 13059992 ~ 13060304 (-)
G2202034 NA non-coding downstream 52146 13041911 ~ 13042160 (-)
G2202163 NA non-coding upstream 42733 13146278 ~ 13151730 (-)
G2202240 NA non-coding upstream 118640 13222185 ~ 13222642 (-)
G2202241 NA non-coding upstream 119352 13222897 ~ 13223163 (-)
G2202263 NA non-coding upstream 153639 13257184 ~ 13257423 (-)
G2202409 NA non-coding upstream 172603 13276148 ~ 13320121 (-)
G2201542 NA other downstream 844324 12248951 ~ 12249982 (-)
G2199633 NA other downstream 2079338 11014527 ~ 11014968 (-)
LOC110522734 celsr1 other downstream 2163653 10918587 ~ 11012095 (-)
G2199159 NA other downstream 3095657 9997420 ~ 9998649 (-)
urahb urah other upstream 563669 13666900 ~ 13671199 (-)
si:ch211-106e7.2 LOC106584539 other upstream 758959 13862396 ~ 13897713 (-)
G2203060 NA other upstream 907608 14011153 ~ 14012512 (-)
G2203363 LOC106613263 other upstream 1070896 14174441 ~ 14244462 (-)
G2204129 NA other upstream 1421419 14524964 ~ 14525468 (-)
LOC110521347 LOC106584546 other upstream 1175 13094306 ~ 13103545 (-)

Expression


Co-expression Network