cdhr5b (LOC106584514)


Basic Information

Item Value
gene id cdhr5b
gene name LOC106584514
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 13236969 ~ 13250964 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598852.2
AGATAAGCCTTATAGTCACAAAGGTGGAGACTaaagtcagtcctctctcctcaggCCATATAATCACTGCTTTATGCGGACAAGTACAAGTCGGTACAAAAGCCCTGCTATTCCTACCTTATTTCATTAGGATCGATCGGACAATTGAACAGGGCAATGGAGAAGAAATATCCACACTTTACTTTGAGGACCTTGTTGAGCTTTCTGCTTGTGTTTTTGCTTCACAGATCAACTGAAGCGCAACAGATATGCTCCATGCCTGGGGCAACGCCTCCCACTATTAGAGAGAACAACGTTGTTGGTGCTGTTGTGACCACAATCACCACAGAGGAAGGAGTGACCCTAACTATTGTCAGTAATCCTGCAGACTCTTTTGGTCTGAATGGCAATGATCTTACAGCGATAAAAGTTTTGGACTATGAGACTAAAACATCTTTCACCATTGACCTTCTTTGTAAAAAAGGTGACCAATTTCTCACTCTAATAGTAGTGGTACTTATTGAGAATGTGAATGACAACCCGCCAGTATTTGCAGAAAGCCAGTACACTCTCAATGTCGATGAGTTGTCACCTGTAGGCAAAAGTGTCGGTGCATTTGAAGCAACAGATGCAGATAAGGATCGACTCTATTACAGCCTAGTGCCAGATACAGAGGGTTTTAAACTGCAAGAAAACAGCCCAAATATACTAGTGCAACGTGTTCTTGACTATGACGCAGTGACAAGTGTGACACTTATATTATCTGCTCAGgATACCCCCACATCCACACCACCTTCATTCACTGCCACAGCCACTATCCATGTCATCATCATGGACATTGACAACCGTCCACCATGGTTTCAGCCCTGCACAGAAACCATAGTTGACATGTCCAAAATCTGCCTCAGCTCTGGATATACAGGAACAGTCAACTTAACAGAGCAAGAGGTTGGTGCATTGCCATTGCTGCCAGGTCCGGTGCATGCCATTGATGGTGACAAAGGCTTAAATGTGCCGATAATGTACACATTTCCAACCGGGTCTGAATCTGACATTTTCCAGATCAATCAGATCACTGGGGACATCACCATGTTGAAGGCGGCAGATATAGCGGGTCCACTGACCTTAACAGTTTTGGCTTTACAGACATCCAACGGTGACCAGTTCGCGACCACAACGGTCACTATCGTTGTTGTGAAAAAGAGTGTGAACCCACCGCAGTTTGAGAAGATGGAGTATGAGGGCTTCATCTCTGCAGACGCGGGCGTAGACAGCATGGTTCTGGAGAGCAAAGCCTCCAACAGGCCACTCAAGGTCCAGGCCAAGGACACAGACTATGCTGATGGCATCAACCCTGATGTGAGATATGAGGTTCAGGGAAGCACTGAATTCTCCATTACCCCGCAAGGCTTCATCCTCATGACTAAAAACGTTATGCCAGGCACTGTTTCCATGAATTTGCATGCCATCGACTCATCCAATGCAGAATCAACTACAGCATCTCTCAAGGTGGAGGTCATGCCAGGGATTACAACCATGGCCCCAACCACCACTGACATGGCCACCACTGTTATGGCCACCACTGACATGGCCACCACTGACATGGCCACCACTGTTATGGCCACCACTGACATGGCCACCACTGACATGGCTACTGCCACCCATGCCGCCATCAACTCCACAACAGAAGGGGTTCTTGGGGCCCCAGGTGGATATGGTCCTGGGGACATGGCTGCCCTGGGTGCAAGCCTGGCTGTGTTACTGGTGATCTCTATGGTCGTCATCGGCCTGCTCGTCTTCCGCATCCAGAAGGGCAAGACAGATTGGAGGAAGCTGTCAGAGGCCAACATCTTCCGTAGCTCTCTTGGGAAAGGTCCCGGCGAACTCAAGAATGGGGTGCAGTACACCAACGAGGGCTTCCAGAATGACGGAGACACTAGCAGTGTGGGATCCAAAGGCCCAGAGGAGATGGATGGGAAGCGGTCCATCGGGAATGGAGTGACCTCCAGAGCTGTGGAGGAGACTGTCATGAAGGTCTCGGCTCCCCTGTACTCCAACCTTCTGCTTGACACCAGCAGCCTGGCAGGGTCTGATAAGGCCGACAGCGAGAAGGAGGTGAAGCCCATTCTGACCAAGGAGAGGCGTGTGGAGGAGGGCTACAAGTCAGTCTGGTTCAAAGAGGACATCGACCCCAATGCCAAGGAGGAAGTGGTCATCATACCTGACAATGGGGAGCGGGAAGGtgacgacgatgatgatgatgatgatgaggaagaggaggggtttagagaggaggaagaagaataTGACAACTCGTCACCAAAGACCCCAAAGGTGTTGTTCTCTGATGCTGATATGGATGATGGCCGTGGAGTGAAGTTTGAGGCTTCTGAGAAAGAAAAGATCCAGACGTCTGACCTGTGAGGAGTAGAGGGGTAGGCCTGCGCTGGATTTAGCTTGCCTTGTCTGTTTGGGTGGGTGAGCTTGTCTTTTTTCGTTCAGTTGTGCCGGGTAAGCTAAATATTGCGCAATTGGGGCCCCATCTATGATTGTTGTGTAAATTCCACACTAAATATCTGTGTGCGCCATTTCTGAAAATAATACGTACGTCTAAACATATTGAGATTTCTAAACTTGGCACATGCCCTACAAACACATTTTTATCATTATAATTCAGACCTGTCGTTAAACTGTGCACACATGGACTAGCATTCTAACTCTGTCAGAAAAAGTCCTTTCATTCACCTTTTATAGTGACAATAACGCCCTTTATTTGTTGTATAATTTGGAACTATTGGAATTAGGCCACGTAGGTTTCTGAAAGAAAGAGTAATGGCAAATTTGATTACATTTTGTAGAGGTGTGTGCAGAGTGTTTTAGTTTTTTACAGTGACTTTTTCAAACTCAACATTCATGCTGCCTATAGTGAGTGCCAAGCACTTTATTGATTGTATATTCAAAACAATTTTACTTTGACAGTATGGGTATAGGCTACAGTATTGCTGTGCAATAGGAGCGTGACATCATAGCCTGTTTAAGCCTATACCAAGACAGGAGATAGAAACACAATCATCGATTGGTACACTAAATATTGAACAACAATTTGTCTTTTGTGTAAAACTGTGGGCTGTAGCATTTTACTTAAAACTACTGGTCTATTTACTGTGTTGGCAGACTGTTTTAATCTTTTGCAGTAACATTCTGTATTTAGCAAAGGACTGTGACAATTTCTGAACGAGAAATGATGGTAAATTGTTGTGGACCTGTCAGCAGAATGTCTGACCTCTCCAATGTTTTACGTTGACTCTCCCCTCAACCTAATATGCTGGACTGCCCGGGAAGGTGCAATGgttatgaaaataaaataaataggaaTAGATTCCTATGTCTAATCATTCAACAACAAAATGAACAGAATTAAAAAATTAACATCTT
>XM_021598853.2
GATAAGCCTTATAGTCACAAAGGTGGAGACTaaagtcagtcctctctcctcaggCCATATAATCACTGCTTTATGCGGACAAGTACAAGTCGGTACAAAAGCCCTGCTATTCCTACCTTATTTCATTAGGATCGATCGGACAATTGAACAGGGCAATGGAGAAGAAATATCCACACTTTACTTTGAGGACCTTGTTGAGCTTTCTGCTTGTGTTTTTGCTTCACAGATCAACTGAAGCGCAACAGATATGCTCCATGCCTGGGGCAACGCCTCCCACTATTAGAGAGAACAACGTTGTTGGTGCTGTTGTGACCACAATCACCACAGAGGAAGGAGTGACCCTAACTATTGTCAGTAATCCTGCAGACTCTTTTGGTCTGAATGGCAATGATCTTACAGCGATAAAAGTTTTGGACTATGAGACTAAAACATCTTTCACCATTGACCTTCTTTGTAAAAAAGGTGACCAATTTCTCACTCTAATAGTAGTGGTACTTATTGAGAATGTGAATGACAACCCGCCAGTATTTGCAGAAAGCCAGTACACTCTCAATGTCGATGAGTTGTCACCTGTAGGCAAAAGTGTCGGTGCATTTGAAGCAACAGATGCAGATAAGGATCGACTCTATTACAGCCTAGTGCCAGATACAGAGGGTTTTAAACTGCAAGAAAACAGCCCAAATATACTAGTGCAACGTGTTCTTGACTATGACGCAGTGACAAGTGTGACACTTATATTATCTGCTCAGgATACCCCCACATCCACACCACCTTCATTCACTGCCACAGCCACTATCCATGTCATCATCATGGACATTGACAACCGTCCACCATGGTTTCAGCCCTGCACAGAAACCATAGTTGACATGTCCAAAATCTGCCTCAGCTCTGGATATACAGGAACAGTCAACTTAACAGAGCAAGAGGTTGGTGCATTGCCATTGCTGCCAGGTCCGGTGCATGCCATTGATGGTGACAAAGGCTTAAATGTGCCGATAATGTACACATTTCCAACCGGGTCTGAATCTGACATTTTCCAGATCAATCAGATCACTGGGGACATCACCATGTTGAAGGCGGCAGATATAGCGGGTCCACTGACCTTAACAGTTTTGGCTTTACAGACATCCAACGGTGACCAGTTCGCGACCACAACGGTCACTATCGTTGTTGTGAAAAAGAGTGTGAACCCACCGCAGTTTGAGAAGATGGAGTATGAGGGCTTCATCTCTGCAGACGCGGGCGTAGACAGCATGGTTCTGGAGAGCAAAGCCTCCAACAGGCCACTCAAGGTCCAGGCCAAGGACACAGACTATGCTGATGGCATCAACCCTGATGTGAGATATGAGGTTCAGGGAAGCACTGAATTCTCCATTACCCCGCAAGGCTTCATCCTCATGACTAAAAACGTTATGCCAGGCACTGTTTCCATGAATTTGCATGCCATCGACTCATCCAATGCAGAATCAACTACAGCATCTCTCAAGGTGGAGGTCATGCCAGAAGGGGTTCTTGGGGCCCCAGGTGGATATGGTCCTGGGGACATGGCTGCCCTGGGTGCAAGCCTGGCTGTGTTACTGGTGATCTCTATGGTCGTCATCGGCCTGCTCGTCTTCCGCATCCAGAAGGGCAAGACAGATTGGAGGAAGCTGTCAGAGGCCAACATCTTCCGTAGCTCTCTTGGGAAAGGTCCCGGCGAACTCAAGAATGGGGTGCAGTACACCAACGAGGGCTTCCAGAATGACGGAGACACTAGCAGTGTGGGATCCAAAGGCCCAGAGGAGATGGATGGGAAGCGGTCCATCGGGAATGGAGTGACCTCCAGAGCTGTGGAGGAGACTGTCATGAAGGTCTCGGCTCCCCTGTACTCCAACCTTCTGCTTGACACCAGCAGCCTGGCAGGGTCTGATAAGGCCGACAGCGAGAAGGAGGTGAAGCCCATTCTGACCAAGGAGAGGCGTGTGGAGGAGGGCTACAAGTCAGTCTGGTTCAAAGAGGACATCGACCCCAATGCCAAGGAGGAAGTGGTCATCATACCTGACAATGGGGAGCGGGAAGGtgacgacgatgatgatgatgatgatgaggaagaggaggggtttagagaggaggaagaagaataTGACAACTCGTCACCAAAGACCCCAAAGGTGTTGTTCTCTGATGCTGATATGGATGATGGCCGTGGAGTGAAGTTTGAGGCTTCTGAGAAAGAAAAGATCCAGACGTCTGACCTGTGAGGAGTAGAGGGGTAGGCCTGCGCTGGATTTAGCTTGCCTTGTCTGTTTGGGTGGGTGAGCTTGTCTTTTTTCGTTCAGTTGTGCCGGGTAAGCTAAATATTGCGCAATTGGGGCCCCATCTATGATTGTTGTGTAAATTCCACACTAAATATCTGTGTGCGCCATTTCTGAAAATAATACGTACGTCTAAACATATTGAGATTTCTAAACTTGGCACATGCCCTACAAACACATTTTTATCATTATAATTCAGACCTGTCGTTAAACTGTGCACACATGGACTAGCATTCTAACTCTGTCAGAAAAAGTCCTTTCATTCACCTTTTATAGTGACAATAACGCCCTTTATTTGTTGTATAATTTGGAACTATTGGAATTAGGCCACGTAGGTTTCTGAAAGAAAGAGTAATGGCAAATTTGATTACATTTTGTAGAGGTGTGTGCAGAGTGTTTTAGTTTTTTACAGTGACTTTTTCAAACTCAACATTCATGCTGCCTATAGTGAGTGCCAAGCACTTTATTGATTGTATATTCAAAACAATTTTACTTTGACAGTATGGGTATAGGCTACAGTATTGCTGTGCAATAGGAGCGTGACATCATAGCCTGTTTAAGCCTATACCAAGACAGGAGATAGAAACACAATCATCGATTGGTACACTAAATATTGAACAACAATTTGTCTTTTGTGTAAAACTGTGGGCTGTAGCATTTTACTTAAAACTACTGGTCTATTTACTGTGTTGGCAGACTGTTTTAATCTTTTGCAGTAACATTCTGTATTTAGCAAAGGACTGTGACAATTTCTGAACGAGAAATGATGGTAAATTGTTGTGGACCTGTCAGCAGAATGTCTGACCTCTCCAATGTTTTACGTTGACTCTCCCCTCAACCTAATATGCTGGACTGCCCGGGAAGGTGCAATGgttatgaaaataaaataaataggaaTAGATTCCTATGTCTAATCATTCAACAACAAAATGAACAGAATTAAAAAATTAACATCTT

Function

NR:

description
cadherin-related family member 5 isoform X2

GO: NA

KEGG:

id description
K16505 CDHR5, MUCDHL; cadherin-related family member 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598852.2 False 3414 mRNA 0.46 15 13236969 13250964
XM_021598853.2 True 3251 mRNA 0.45 14 13236970 13250964
Loading

Neighbor

gene id symbol gene type direction distance location
deaf1 LOC106584542 coding upstream 88450 13117567 ~ 13148519 (+)
bet1l bet1l coding upstream 122055 13111707 ~ 13114914 (+)
LOC110521345 LOC106584548 coding upstream 163085 13057030 ~ 13073884 (+)
aass LOC100136272 coding upstream 315653 12906149 ~ 12921316 (+)
LOC110521342 LOC106584552 coding upstream 340172 12893320 ~ 12896797 (+)
LOC110521354 LOC106584516 coding downstream 30660 13281624 ~ 13287124 (+)
LOC110521355 LOC106584515 coding downstream 41226 13292190 ~ 13301806 (+)
LOC110521357 LOC106584519 coding downstream 52506 13303470 ~ 13309730 (+)
LOC110521356 tnni2 coding downstream 62088 13313052 ~ 13319792 (+)
LOC110521360 NA coding downstream 72003 13322967 ~ 13333642 (+)
G2202219 NA non-coding upstream 11759 13225002 ~ 13225210 (+)
G2202202 NA non-coding upstream 13902 13222460 ~ 13223067 (+)
G2202206 NA non-coding upstream 26819 13209950 ~ 13210150 (+)
G2202085 NA non-coding upstream 129200 13107437 ~ 13107769 (+)
G2202066 NA non-coding upstream 147592 13089159 ~ 13089377 (+)
G2202201 NA non-coding downstream 3453 13254417 ~ 13255322 (+)
G2202345 NA non-coding downstream 152842 13403806 ~ 13404387 (+)
G2202594 NA non-coding downstream 347020 13597984 ~ 13598204 (+)
G2202598 NA non-coding downstream 350918 13601882 ~ 13602111 (+)
G2202196 NA other upstream 35478 13201138 ~ 13201491 (+)
LOC110521323 LOC106561036 other upstream 1440034 11683849 ~ 11796935 (+)
G2198837 NA other upstream 2092297 11144213 ~ 11144672 (+)
LOC110521306 LOC106584595 other upstream 2359180 10799756 ~ 10920504 (+)
G2198247 NA other upstream 3012852 10221650 ~ 10224117 (+)
tnnt3a LOC100136357 other downstream 184844 13435735 ~ 13462187 (+)
G2203653 NA other downstream 1308483 14559447 ~ 14567103 (+)
G2203973 NA other downstream 2021081 15272045 ~ 15273733 (+)
G2205546 NA other downstream 2979207 16230171 ~ 16232396 (+)

Expression

cdhr5b(LOC106584514) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 300.
End of interactive chart.

cdhr5b(LOC106584514) Expression in each Bioproject

Bar chart with 19 bars.
cdhr5b(LOC106584514) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 10000.
End of interactive chart.

Co-expression Network