LOC110521354 (LOC106584516)


Basic Information

Item Value
gene id LOC110521354
gene name LOC106584516
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 13281624 ~ 13287124 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598855.2
GTGATAGTGTGTTGAGGAAATACATCAAAACTCCCTATCATCTACAAGTTGTAACAACATGGAGGGAAGGGATGATTGGGATCAAGAAATAGACTGGACACATCATTGGATTTCACATTTCTGGAAACAAACGTGTCAATTATCATTGGAGAAAAGGCCACCGCTACACCATGTTTGCTACAATCCCATTAGCTAAGAGCACCGTAACCCCTAACACTACAGCCAGCCACACTACCGCCGCTCCCGGGTTTATAGACCAACTACTGAACAAGATTCCCTTGCCAAGATGGGCCATTTACACCATCTTTGCTGTCATTGTCTTGATGTTTTTGGTGTGTATTATATGCATCTGTGCGAAATGCTGCTGCAAGAGCAAGAAAAAGATCAAAAAGAAGCCGGACAATCAAATCAATCTACAAGGGGTGATTGGTTCCTCGACTACATCGCTAGTCCAACATGGCTCGGATGATGCAGGCTACGGCTCAGCTAAAAACCGGGGGAGACTACTCTATTCTCTGGAATACAAGGCACAAGAGCTGACAGTGGGGCTGAAAGAGGCTGCAGCTCTGACAGCCATGGACCGGAGTGGCACCTCTGACCCCTATGTTAAAGTCTACATCACTCCCAACAAGTCAAAGACATTTGAGACTAAGGTCTACAGGAAAACCCTCAACCCTGTGTTCAATGAACACTTCACATTTAAGATTGACAAGGCTGAGCTCAATGAGTCCACCATAGTCATGAAAGTGTTCGACTTCGATAGATTCTCCAAACACGACATCATCGGGGAGCTGAGGCTGCAGCTCGGAATCATCGACTGGAACCATGTGATTGAAGAGTGGGAAGACCTGAGAGAACCCTCCAAGTTTGAGGATGAAATTCTGGGGGAGATCTGCTTCTCGTTGCGCTATGTCCCCACCACTAACAAGCTGACTGTTGTCATCCTGGAAGCCAAGAACTTAAAGAGTATGGACAAAGGGGGCTCATCAGATCCCTATGTAAAAGTGCAGCTTGCTCTGGACAAGAAGAAGTGGAAGAGAAAGAAGACATCTGTTAAAAAGTCCACACTGAATCCCTACTTCAACGAATCCTTTACGTTTGATGTGTCATTTGAACAAATTCAAAGGGTTCACCTGATGATTTCCGTGTGGGACCATGACAAGTTGAGCAGGAACGATGCCATAGGGAAGATTTTCCTGGGTTGTGATGCTGCAGGGAACCAGCTGAGGCACTGGGCAGACATGCTGTCCAATCCCCGTAGGCCTGTGGCTCAGTGGCACAACCTGCTTTCCAACGAACAAGTGGACTCCACCCTCGACCTCAAACACACAGTTAGGATCCCCTTCATCAATAAGAACTTTTGAGAAATCTTAGACTCGCTTGCCAGACTCATGGCATTCAAGTGGCTATGGGAAGAGGTTGGAGAAAATCCTCCTCAATGGCCCGACATAACCAGATTCCTCCTTCTACTTCACTAAGCTAATAGCAGCTTGGAGGCCCTAGCACTTTTAAACGCtgcaaaatacagtgccttcagaaagtattcacaccccttgactttttatacattttgttgtgttacagcctgaatttaaaatggattatattgaGATTTTTACGTCACTGTCCTACACACAAGACCCTATAATATccaagtggaatgatgtttttagaaatatttacaaaaaatatttttatgaaaagctgaaatgttttgagtcaataagtattgaacccctttgttatggcaaggctaaataagttcagg
>XM_021598856.2
CATCAAAACTCCCTATCATCTACAAGTTGTAACAACATGGAGGGAAGGGATGATTGGGATCAAGAAATAGACTGGACACATCATTGGATTTCACATTTCTGGAAACAAACGTGTCAATTATCATTGGAGAAAAGTAATACAGTCTTCAAGTAGGCTACAGTAAAAAGGATACAAACTACGCTGGTACTGAAACAGCCACCGCTACACCATGTTTGCTACAATCCCATTAGCTAAGAGCACCGTAACCCCTAACACTACAGCCAGCCACACTACCGCCGCTCCCGGGTTTATAGACCAACTACTGAACAAGATTCCCTTGCCAAGATGGGCCATTTACACCATCTTTGCTGTCATTGTCTTGATGTTTTTGGTGTGTATTATATGCATCTGTGCGAAATGCTGCTGCAAGAGCAAGAAAAAGATCAAAAAGAAGCCGGACAATCAAATCAATCTACAAGGGGTGATTGGTTCCTCGACTACATCGCTAGTCCAACATGGCTCGGATGATGCAGGCTACGGCTCAGCTAAAAACCGGGGGAGACTACTCTATTCTCTGGAATACAAGGCACAAGAGCTGACAGTGGGGCTGAAAGAGGCTGCAGCTCTGACAGCCATGGACCGGAGTGGCACCTCTGACCCCTATGTTAAAGTCTACATCACTCCCAACAAGTCAAAGACATTTGAGACTAAGGTCTACAGGAAAACCCTCAACCCTGTGTTCAATGAACACTTCACATTTAAGATTGACAAGGCTGAGCTCAATGAGTCCACCATAGTCATGAAAGTGTTCGACTTCGATAGATTCTCCAAACACGACATCATCGGGGAGCTGAGGCTGCAGCTCGGAATCATCGACTGGAACCATGTGATTGAAGAGTGGGAAGACCTGAGAGAACCCTCCAAGTTTGAGGATGAAATTCTGGGGGAGATCTGCTTCTCGTTGCGCTATGTCCCCACCACTAACAAGCTGACTGTTGTCATCCTGGAAGCCAAGAACTTAAAGAGTATGGACAAAGGGGGCTCATCAGATCCCTATGTAAAAGTGCAGCTTGCTCTGGACAAGAAGAAGTGGAAGAGAAAGAAGACATCTGTTAAAAAGTCCACACTGAATCCCTACTTCAACGAATCCTTTACGTTTGATGTGTCATTTGAACAAATTCAAAGGGTTCACCTGATGATTTCCGTGTGGGACCATGACAAGTTGAGCAGGAACGATGCCATAGGGAAGATTTTCCTGGGTTGTGATGCTGCAGGGAACCAGCTGAGGCACTGGGCAGACATGCTGTCCAATCCCCGTAGGCCTGTGGCTCAGTGGCACAACCTGCTTTCCAACGAACAAGTGGACTCCACCCTCGACCTCAAACACACAGTTAGGATCCCCTTCATCAATAAGAACTTTTGAGAAATCTTAGACTCGCTTGCCAGACTCATGGCATTCAAGTGGCTATGGGAAGAGGTTGGAGAAAATCCTCCTCAATGGCCCGACATAACCAGATTCCTCCTTCTACTTCACTAAGCTAATAGCAGCTTGGAGGCCCTAGCACTTTTAAACGCtgcaaaatacagtgccttcagaaagtattcacaccccttgactttttatacattttgttgtgttacagcctgaatttaaaatggattatattgaGATTTTTACGTCACTGTCCTACACACAAGACCCTATAATATccaagtggaatgatgtttttagaaatatttacaaaaaatatttttatgaaaagctgaaatgttttgagtcaataagtattgaacccctttgttatggcaaggctaaataagttcagg

Function

NR:

description
synaptotagmin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598855.2 False 1768 mRNA 0.45 9 13281624 13287124
XM_021598856.2 True 1806 mRNA 0.44 10 13281646 13287124

Neighbor

gene id symbol gene type direction distance location
cdhr5b LOC106584514 coding upstream 30660 13236969 ~ 13250964 (+)
LOC118945896 NA coding upstream 33509 13248062 ~ 13248115 (+)
deaf1 LOC106584542 coding upstream 133105 13117567 ~ 13148519 (+)
bet1l bet1l coding upstream 166710 13111707 ~ 13114914 (+)
LOC110521345 LOC106584548 coding upstream 207740 13057030 ~ 13073884 (+)
LOC110521355 LOC106584515 coding downstream 5066 13292190 ~ 13301806 (+)
LOC110521357 LOC106584519 coding downstream 16346 13303470 ~ 13309730 (+)
LOC110521356 tnni2 coding downstream 25928 13313052 ~ 13319792 (+)
LOC110521360 NA coding downstream 35843 13322967 ~ 13333642 (+)
LOC110521358 LOC100136571 coding downstream 49872 13336996 ~ 13342024 (+)
G2202201 NA non-coding upstream 26302 13254417 ~ 13255322 (+)
G2202219 NA non-coding upstream 56414 13225002 ~ 13225210 (+)
G2202202 NA non-coding upstream 58557 13222460 ~ 13223067 (+)
G2202206 NA non-coding upstream 71474 13209950 ~ 13210150 (+)
G2202085 NA non-coding upstream 173855 13107437 ~ 13107769 (+)
G2202345 NA non-coding downstream 116682 13403806 ~ 13404387 (+)
G2202594 NA non-coding downstream 310860 13597984 ~ 13598204 (+)
G2202598 NA non-coding downstream 314758 13601882 ~ 13602111 (+)
G2202621 NA non-coding downstream 357128 13644252 ~ 13644481 (+)
G2202196 NA other upstream 80133 13201138 ~ 13201491 (+)
LOC110521323 LOC106561036 other upstream 1484689 11683849 ~ 11796935 (+)
G2198837 NA other upstream 2136952 11144213 ~ 11144672 (+)
LOC110521306 LOC106584595 other upstream 2403835 10799756 ~ 10920504 (+)
G2198247 NA other upstream 3057507 10221650 ~ 10224117 (+)
tnnt3a LOC100136357 other downstream 148684 13435735 ~ 13462187 (+)
G2203653 NA other downstream 1272323 14559447 ~ 14567103 (+)
G2203973 NA other downstream 1984921 15272045 ~ 15273733 (+)
G2205546 NA other downstream 2943047 16230171 ~ 16232396 (+)

Expression


Co-expression Network