LOC110521359 (LOC106584521)


Basic Information

Item Value
gene id LOC110521359
gene name LOC106584521
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 13350858 ~ 13355952 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598863.2
AAGGAAAGAACATTTATGAGGTGAACAGGGCTGGGCATAGTGTATTTCAGGAGCTCGATGTTCCATTGGTCTGACATGGAAACTACTTCCATAAAGAGGACCCAGTGTTTCTGCTGATGCATCATCCGACACCATATATACCGTTTTCATGTTTCACCGCATGTCGCTTGTCAGTGTGCTAGTCTTCCATTCTTCCTCCTGGTGTgttctgccctcctcctcctcctcttcctctcatagGGTGTGAAACACAACAACAGCCAAGATGTCAGATAAAAAGATGACATCGAGCCGCAGGCATCATCTGAAGAGCTTAGTGCTCCAGATTGCGTTTGAGCTTATTGAAGTGGAGAAAAAGGAGGCTGTGCAGGAGAAAGCCAATTTCATGGCTGAGCTCCCCGCCCTGGATTTGTCTGGAGATCAAACGGCGCTGGTGGAAATGCTCAAAAAGTTAGCCCAATCCATCGACAAGGTTGATGAGGAAAGATATGACGCAGAGTCCAAGGTGACGAAGGCAGACAAGGAGATTGAGGATTTGAGAATGAAAGTGGTTGAGATCCAGGGCATGAAGAAGCCAGCTCTGAAGAAAGTGCGTATGTCTGCTGATGCTATGCTTCAGGCTCTGCTGGGCACCAAGCACAAGGCTTCCATGGATTTCAGAGCCAACTTGAAAGAAGTGAAGAAGGAGGTCAAAGAGGAGGCAGCGGATGCAGTTGGTGACTGGCGCAAGAACGTTGATGAACAGGCTGGCATGGATGGCAGAAAGAAGAAGTTTCAGGGTTAAACACATTCCGTTTTCAGTCATAGCCGACTTTTGTGTTTTGTCGTATTGTGGTACAGAGACGGATTTATATGACCTTGTTGTTAGGTATCCCTGCAGGAAGAGGATCTTTGATTTTAAAATGCTATTATTTTTTGATACTGTAGGTTCAAATATGTATTTGACACTATGGTTTtggatatctctctctcccctctcccccactctctctctctttttctctcgctgtctctctttctttctatttaACTTTTCAGTGTAATTTGCAAATGTTTTTGGCTATTGTATAGTGAGATGGAAAGGGTAAATATTTGTAGCTTCACCCACTCTTAACATCACACAGCTTCCCATCTGCATCTGTAACATTCACTAAAAGGAGTATATTCACtaacagaaaaataaaaataaaaacaattgtaaAAAGCG
>XM_036969515.1
gcaaaccgatcgctgcagctgtacatagtctatcgGGTGTGAAACACAACAACAGCCAAGATGTCAGATAAAAAGATGACATCGAGCCGCAGGCATCATCTGAAGAGCTTAGTGCTCCAGATTGCGTTTGAGCTTATTGAAGTGGAGAAAAAGGAGGCTGTGCAGGAGAAAGCCAATTTCATGGCTGAGCTCCCCGCCCTGGATTTGTCTGGAGATCAAACGGCGCTGGTGGAAATGCTCAAAAAGTTAGCCCAATCCATCGACAAGGTTGATGAGGAAAGATATGACGCAGAGTCCAAGGTGACGAAGGCAGACAAGGAGATTGAGGATTTGAGAATGAAAGTGGTTGAGATCCAGGGCATGAAGAAGCCAGCTCTGAAGAAAGTGCGTATGTCTGCTGATGCTATGCTTCAGGCTCTGCTGGGCACCAAGCACAAGGCTTCCATGGATTTCAGAGCCAACTTGAAAGAAGTGAAGAAGGAGGTCAAAGAGGAGGCAGCGGATGCAGTTGGTGACTGGCGCAAGAACGTTGATGAACAGGCTGGCATGGATGGCAGAAAGAAGAAGTTTCAGGGTTAAACACATTCCGTTTTCAGTCATAGCCGACTTTTGTGTTTTGTCGTATTGTGGTACAGAGACGGATTTATATGACCTTGTTGTTAGGTATCCCTGCAGGAAGAGGATCTTTGATTTTAAAATGCTATTATTTTTTGATACTGTAGGTTCAAATATGTATTTGACACTATGGTTTtggatatctctctctcccctctcccccactctctctctctttttctctcgctgtctctctttctttctatttaACTTTTCAGTGTAATTTGCAAATGTTTTTGGCTATTGTATAGTGAGATGGAAAGGGTAAATATTTGTAGCTTCACCCACTCTTAACATCACACAGCTTCCCATCTGCATCTGTAACATTCACTAAAAGGAGTATATTCACtaacagaaaaataaaaataaaaacaattgtaaAAAGCG

Function

NR:

description
troponin I, fast skeletal muscle-like

GO:

id name namespace
GO:0030239 myofibril assembly biological_process
GO:0005861 troponin complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598863.2 False 1207 mRNA 0.44 7 13350858 13355952
XM_036969515.1 True 1002 mRNA 0.43 7 13352505 13355952

Neighbor

gene id symbol gene type direction distance location
LOC110521361 LOC100136569 coding upstream 1379 13348157 ~ 13349479 (+)
LOC110521358 LOC100136571 coding upstream 8834 13336996 ~ 13342024 (+)
LOC110521360 NA coding upstream 17216 13322967 ~ 13333642 (+)
LOC110521356 tnni2 coding upstream 31066 13313052 ~ 13319792 (+)
LOC110521357 LOC106584519 coding upstream 41128 13303470 ~ 13309730 (+)
LOC110521363 LOC106584524 coding downstream 35355 13391307 ~ 13433028 (+)
tnnt3a LOC100136357 coding downstream 79783 13435735 ~ 13462187 (+)
LOC110522741 LOC106584529 coding downstream 226765 13582717 ~ 13650727 (+)
etfbkmt etfbkmt coding downstream 457353 13813305 ~ 13814906 (+)
LOC110521381 NA coding downstream 558934 13914886 ~ 13945122 (+)
LOC110521355 LOC106584515 non-coding upstream 49252 13292190 ~ 13301806 (+)
G2202201 NA non-coding upstream 95536 13254417 ~ 13255322 (+)
G2202219 NA non-coding upstream 125648 13225002 ~ 13225210 (+)
G2202202 NA non-coding upstream 127791 13222460 ~ 13223067 (+)
G2202206 NA non-coding upstream 140708 13209950 ~ 13210150 (+)
G2202345 NA non-coding downstream 47854 13403806 ~ 13404387 (+)
G2202594 NA non-coding downstream 242032 13597984 ~ 13598204 (+)
G2202598 NA non-coding downstream 245930 13601882 ~ 13602111 (+)
G2202621 NA non-coding downstream 288300 13644252 ~ 13644481 (+)
G2202622 NA non-coding downstream 289250 13645202 ~ 13645760 (+)
G2202196 NA other upstream 149367 13201138 ~ 13201491 (+)
LOC110521323 LOC106561036 other upstream 1553923 11683849 ~ 11796935 (+)
G2198837 NA other upstream 2206186 11144213 ~ 11144672 (+)
LOC110521306 LOC106584595 other upstream 2473069 10799756 ~ 10920504 (+)
G2203653 NA other downstream 1203495 14559447 ~ 14567103 (+)
G2203973 NA other downstream 1916093 15272045 ~ 15273733 (+)
G2205546 NA other downstream 2874219 16230171 ~ 16232396 (+)
G2206179 NA other downstream 3807685 17163637 ~ 17164159 (+)

Expression


Co-expression Network