myod2 (myod2)


Basic Information

Item Value
gene id myod2
gene name myod2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 13459334 ~ 13461444 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124728.1
TAGGATACAGGTTGGGAAAGACAACCAAATTCCTACACTAAAAACGAATACTAATTGTACGGTTTTTGTTTGCTCTAAGGATACCTTTACAGTTCAACTTTTTGCCCAAAGTTTCCGGTAACCTCTAACGTTTGTGACAAATACAGAGCCAGGATTACAATCGTTACAAGGCTGGTCTTGGAATTTGACAGTGAGATGGAGTTGTCGGATATTTCGTTCCCTGTCACCTCTGCTGATGACTTTTATGACGACCCGTGCTTCAACACCAGCGACATGCATTTCTTCGAGGACCTGGACCCCCGGTTGGTCCACGTGGGACTCCTCAAGCCAGACGACCACCATTACAACGAAGACGAGCACATCAGGGCACCGAGCGGGCACCACCAAGCCGGGAGGTGCCTCCTCTGGGCATGTAAAGCTTGCAAGAGGAAAACCACAAACTCTGACCGGAGGAAGGCTGCTACTatgcgggagaggaggaggctgggAAAGGTCAACGATGCCTTCGAGAACCTGAAGAGATGCACGTCGAACAACCCCAATCAGAGGCTTCCCAAGGTGGAGATCTTGAGAAATGCAATCAGCTACATCGAGTCTCTGCAATCTCTGCTCAGGGGCCAGGACGGCGAGAACTACTACCCGGTGTTGGAACACTATAGCGGGGACTCTGATGCATCCAGTCCACAGTCCAACTGCTCTGATGGAATGATGGACTATAATGCCCCAACGTGCACGTCCGCAAGACGAAGCAACTATGACAGCTCTTATTTCGCCGAGACTCCAAATGCTGATTCCAGAAGCAACAAGAACGCAGCAGTCTCCAGCCTGGATTGTCTTTCCAACATCGTGGAGAGAATCTCTACAGACACGTCAGCGTGCACTGTGTTATCAGGCCAGGAGGGTTCCGAAGGTAGCCCCTGTTCTCCACAAGAGGGATCTATCCTGCGAAACGGGGGCACCGTGCCGTCACCGACCAACTGCCCACAGCCGTCCCATGACCCCATCTACCAAGTGCTATGAACACAGTGATAGTATGGCTACATTCATGAAAACGAATCGATTCCTGTAAATTGTAGAAAACAACAAACGGACAGAGTTGCAGAATGTTGCTGTGGTAGAAGAATAGGATGGCAAAGCTGTCATTCCTTCTAATAGAAAGGTTTCAATTCCTTGAAGATCAATCATTGGCTTCCCATTGGTCACGTTTTATGAGATATAATTTCCGACTTATTTATGTAGGCCTAAGTGTAATCGTAAATGAAATATTTGACCACTTTCttagacttgtgtgtgtgtgtgtcatcgtCATCTTTTGTTCTTTCCTtgccatttttattgtttatgaCAATAGAGGACCATTTTTGTATATGTGTAAATAAGAGgtgatttgttttttaaaaaataaacgaaaaaaagtgttttatgtaTTTAATGTAGCCTGAGGCGCTTGGTTTGTTTGTTGTGAGAAATGTTTAACTTTATATTTATACAGCTTAAAATGAGTGAAAGGCTTTCGATGTTATTATAAATAAATGACTATGACTATTTATACAAA

Function

NR:

description
myoblast determination protein 1 homolog 2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007517 muscle organ development biological_process
GO:0030154 cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09064 MYOD1, MYF3; myogenic factor 3

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124728.1 True 1555 mRNA 0.45 5 13459334 13461444

Neighbor

gene id symbol gene type direction distance location
prr33 LOC106584523 coding downstream 24257 13426651 ~ 13435077 (-)
LOC110521353 LOC106584518 coding downstream 189213 13267984 ~ 13270121 (-)
drd4a LOC106584511 coding downstream 272629 13159502 ~ 13186705 (-)
ticam1 LOC106584543 coding downstream 340636 13108364 ~ 13118698 (-)
LOC110521347 LOC106584546 coding downstream 355789 13094306 ~ 13103545 (-)
LOC110521367 LOC106584527 coding upstream 1146 13462590 ~ 13474314 (-)
LOC110521369 LOC106584531 coding upstream 153813 13615257 ~ 13634264 (-)
LOC110521368 LOC106584530 coding upstream 189414 13650858 ~ 13666753 (-)
urahb urah coding upstream 205456 13666900 ~ 13671199 (-)
LOC110521370 LOC106584532 coding upstream 211204 13672648 ~ 13736659 (-)
G2202449 NA non-coding downstream 96197 13362884 ~ 13363137 (-)
G2202446 NA non-coding downstream 98797 13360143 ~ 13360537 (-)
G2202407 NA non-coding downstream 117344 13337097 ~ 13341990 (-)
G2202409 NA non-coding downstream 139213 13276148 ~ 13320121 (-)
G2202504 NA non-coding upstream 24275 13485719 ~ 13488753 (-)
G2202538 NA non-coding upstream 64527 13525971 ~ 13526293 (-)
G2202924 NA non-coding upstream 184976 13646420 ~ 13646703 (-)
G2202925 NA non-coding upstream 186947 13648391 ~ 13648791 (-)
LOC110521346 LOC106584547 other downstream 371811 13078925 ~ 13087584 (-)
G2201542 NA other downstream 1209352 12248951 ~ 12249982 (-)
G2199633 NA other downstream 2444366 11014527 ~ 11014968 (-)
LOC110522734 celsr1 other downstream 2528681 10918587 ~ 11012095 (-)
si:ch211-106e7.2 LOC106584539 other upstream 401060 13862396 ~ 13897713 (-)
G2203060 NA other upstream 549709 14011153 ~ 14012512 (-)
G2203363 LOC106613263 other upstream 712997 14174441 ~ 14244462 (-)
G2204129 NA other upstream 1063520 14524964 ~ 14525468 (-)

Expression


Co-expression Network