LOC110521367 (LOC106584527)


Basic Information

Item Value
gene id LOC110521367
gene name LOC106584527
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 13462590 ~ 13474314 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110521367
CACTCTCATTTAGGACAGTGTCGATCACACGCACCGGATGAATTTGAGAATCTGAACTGGAAACGATTTCTCCATTTCTAAATTATCGTTCACTCTCGCAACCAAAGACTGCAAAGAACACTTATAGTGTATGTAGTTGTTTATATTACGCTATTCATTTAGTGTTAAAGGATCAATATTATCACAAGTTTATGTGAAGGTATGGGAAGGAGATAGTGTCGTTCAATCGAGATCAGTTGTGAGCTAGCCAACTTTCGACTTCATCAGTTGTGCAATAACGGTTGTTGTTACAATCTAATCTCCGTCGGGAATTTTTAAACATGGCTGAACTAAGTGTCAAGAGATTAAAGACCAGCCTGCCTATCTGTAAAATTCACAGACCATTTGTCGGGAGCAGGGTGAAACAGTCGTTGAGGAGAGTTTGTGCGGAGTATCTACAATGCTTATGGAGGTTGCTTACAGACTTGATGCACTGGCCAATATATTTGAGCAGGATGATATTGCCTTGCCAAGGGTGGCAGCGTTCTTCCATGAGCACTCTGAGCAGGAACAGGCGCAGGCTGAGGCCATGCTGGACTACCTGTCAGACAGAGGGGGACAGTACTGTAATAAAGACATACAGAGGCCAGGCTGTGAGGAGGTGTGTGCAGTGATCCCAGCCCTCGAGCTGATGCTGGGCCAGTGGAAGGAGGAGATGGCTGTGATGGTGGAGCTCAGCCAGCTGTCCAAGGAGCACAGCGACCCGCACTCTGCCAGCGTGGTCAAGAGCCGCTTCCTGGGGCCACTGGTGCCCTGCGTCAAACTGCTGGGAGACCTCCTGACCAACGCCCGTAGAGTGGGCTGCACCATTGACCGCTCGGGGGGCTTTGGGGAGTACCTAATCAACCAGCTGCAGGAGGAGTTGACCAACGTCACCAGTGGATGAATCACTCACTAGCGTGTGTTTCCATTAAAGAAGCCTACTTGGTGAGTTAGACTCACAAAACAAGCCTTTCCTGTCatgtctgtgttttttttgtcTGGGCACCTATATTGTGTTATTGCTAGTCAGTAAGACCAATGTATTGTAGAAGATACTCCAAAGTCCTCTATGGAAATGATTTCTGAACTGAACAAACAAGGGGGGATGGCTTATTTACAACTAGCTTCATTCTAGAATGTAAACTGAACCAAGCTATAGCACTTCTTCCAAATTCCTAAGCTTGAATATCTGCCCTATTTTGTAAATGTTTGGTTCAACATATTGATGGGGGTATTGGGTTATGTTAGAGAGGGTGGAAGGTCTTGAATCCAGTACTTTAAGTTCTAGAAACTACCAAAAATGAAGAATACATGTATTATGTACTTGATCTGGGCATTTAAAAGGGCACAACCTCAGTGTATCATGTATGTATTCCATAAGCAAATTTGAGGTTTGATGTCTTAAAGGATGCTGTTGGATGCATTGAGAGGTAACAATGCGACAATCAAAGTTGATACTGTAATATCTGGTATTTTTTCTGGATGACTCCTGCATTGACAATCTTCTCAGTATACTATGTTAAGTGGCTTATAATGTGAAGTATTTCTGTATTTACTATGTTACAAAGAGATCACTGATTCGTTAGAAATTATGGGTTGATGATTAAGAGATATTGTTTGGGAATTGTCTCATCCATACACTTTGTGTCCACAAAACAAATTGCCTTTAAATATACTGTTGAAATATGAATTATCCCTCttcatcacatacagtacaaagTTAAAACAATGTCTTCCTTTTGAAATAAAGTTTTGAAAAAAA
>TU2519960
AGAGTTTGTGCGGAGTATCTACAATGCTTATGGAGGTTGCTTACAGACTTGATGCACTGGCCAATATATTTGAGCAGGATGATATTGCCTTGCCAAGGGTGGCAGCGTTCTTCCATGAGCACTCTGAGCAGGAACAGGCGCAGGCTGAGGCCATGCTGGACTACCTGTCAGACAGAGGGGGACAGTACTGTAATAAAGACATACAGATTGTGTGGTTAGCTTGCTAACATTATTCAGGGCGATGGTAGTGGCATTTTCCGCTTGAGTTGAATTTTCCTTGTGCTTTTGCTACTCTTTCAGAAGTGATCCTATCCAACCATTAATTAAGCAACGG

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006879 cellular iron ion homeostasis biological_process
GO:0006826 iron ion transport biological_process
GO:0008199 ferric iron binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110521367 False 1783 mRNA 0.46 3 13462590 13474314
TU2519960 True 334 lncRNA 0.46 3 13468244 13473898

Neighbor

gene id symbol gene type direction distance location
myod2 myod2 coding downstream 1146 13459334 ~ 13461444 (-)
prr33 LOC106584523 coding downstream 27513 13426651 ~ 13435077 (-)
LOC110521353 LOC106584518 coding downstream 192469 13267984 ~ 13270121 (-)
drd4a LOC106584511 coding downstream 275885 13159502 ~ 13186705 (-)
ticam1 LOC106584543 coding downstream 343892 13108364 ~ 13118698 (-)
LOC110521369 LOC106584531 coding upstream 140943 13615257 ~ 13634264 (-)
LOC110521368 LOC106584530 coding upstream 176544 13650858 ~ 13666753 (-)
urahb urah coding upstream 192586 13666900 ~ 13671199 (-)
LOC110521370 LOC106584532 coding upstream 198334 13672648 ~ 13736659 (-)
LOC110521372 LOC106584534 coding upstream 279806 13754120 ~ 13781446 (-)
G2202449 NA non-coding downstream 99453 13362884 ~ 13363137 (-)
G2202446 NA non-coding downstream 102053 13360143 ~ 13360537 (-)
G2202407 NA non-coding downstream 120600 13337097 ~ 13341990 (-)
G2202409 NA non-coding downstream 142469 13276148 ~ 13320121 (-)
G2202504 NA non-coding upstream 11405 13485719 ~ 13488753 (-)
G2202538 NA non-coding upstream 51657 13525971 ~ 13526293 (-)
G2202924 NA non-coding upstream 172106 13646420 ~ 13646703 (-)
G2202925 NA non-coding upstream 174077 13648391 ~ 13648791 (-)
G2202885 NA non-coding upstream 276839 13751153 ~ 13752112 (-)
LOC110521347 LOC106584546 other downstream 364287 13094306 ~ 13103545 (-)
LOC110521346 LOC106584547 other downstream 375067 13078925 ~ 13087584 (-)
G2201542 NA other downstream 1212608 12248951 ~ 12249982 (-)
G2199633 NA other downstream 2447622 11014527 ~ 11014968 (-)
LOC110522734 celsr1 other downstream 2531937 10918587 ~ 11012095 (-)
si:ch211-106e7.2 LOC106584539 other upstream 388190 13862396 ~ 13897713 (-)
G2203060 NA other upstream 536839 14011153 ~ 14012512 (-)
G2203363 LOC106613263 other upstream 700127 14174441 ~ 14244462 (-)
G2204129 NA other upstream 1050650 14524964 ~ 14525468 (-)

Expression


Co-expression Network