LOC110522741 (LOC106584529)


Basic Information

Item Value
gene id LOC110522741
gene name LOC106584529
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 13582717 ~ 13650727 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968581.1
ATGTCCACCAAGTCAAAACTCAAAGATGTGGAATCCATCATTAAGATAGTGGACATCGATGGGAGAGATCAAGTGAGGGACTTTGCAGAGGACATGGAGAGAATGCTGGGGTCCAAGATGAAGTCAGTTAAGAGGTTGGCTGAGTCTGCGGAGGATGCAGATTTGTACCACGACTTCAACAAAACGCTAGAGTTTGACTACTATAACTCCATGCTGGTGAACACAGCAGATGAAGATGGTAACTTCATAGAGCTGGGTGGTGAGTTTCCTCTGGAGAAGAATAAGCATTTCAACAACCTGCCAGTCAACACACTGCAGAGTGACGTACAGGTTCCAACCAACGTCTACAACAAAGATGCCTACATCCTCAATGGAATCTACTGGTCGGAGGCTCTGAATGACGTGTTCATGAACAACTTCCAGAAAGACCCCACCCTCACCTGGCAGTACTTTGGCAGCTCCTCGGGATTCTTCAGAATCTACCCTGgTATCAAATGGACTCCAGATTCGAATGGTGTGGCTGCGTTTGACTGCAGGAACCGTAACTGGTATATCCAGGCTGCCACCTCACCAAAGGACATTATTATCGTGGTGGACATCAGTGGCAGTATGAAGGGTCTGAAGATGACCATCGCCAAGCACACCATCAACACCATCCTGGACACACTGGGGGAGAACGACTTTGTCAACGTCATCGCTTACACTGACTACGTGCGCTACGTAGAGCCATGCTTCAAAGGCACCCTGGTGCAGGCTGACTTGGACAACCGCGAGcatttTAAGGTGCTAGTGGATGAGCTTCACGTGAAGGGAGAGGGAAAAGTTGCAAAGGCCATGAAAGAATCCTTCAAAATCCTGAATGAGGCTGCGACCAAGGGCCAGGGCAGCCTGTGTAACCAGGCGATCATGCTGATCACAGATGGAGCCATGGAGGATTTCAAAGACGTGTTTGAAGAGTTCAACTGGCCTGATCGCAGGGTGCGCCTCTTCACTTACCTTATTGGCAGAGAGATGACCTTTGCGGACAACACCAAGTGGATCGCCTGCAACAACAAGGGTTACTACACACACATCTCCACTCTGGCTGACGTGCAGGAGAATGTCATGGAGTATCTTCACGTCCTGAGCCGACCAATGGTCATCAATCACAATCATGACATCATCTGGACCGAGGCTTACATGGACACTGTGCTCTTCGCCACAAAGGCTCAAAGTTTACTTCTCATGACCACAGTGGCAATGCCTGTCTTCAGCAAGAAGAAAGAGACGcTGAGCCATGGGATCCTGCTGGGGGTGGTGGGTTCTGACATCCCCCTGTTGGAGGTAATGAAGCTGGCTCCCAGATATAGGCTGGGTCCCCATGGTTACGCTTTCCTCATCACCAACAATGGGTACATCCTGGCACACCCTGACCTACGACCTCTGTACAAAGAAGGTAAGACGCTGAAGCCCAAGCCTAACTACAACAGTGTGGACCTGGCTGAGGTGGAGTGGGAGGACATAGATGAGATACTAAGGACAGCCATGGTGAAAGGGGAGATGGGCACTCTGTCTTTAAACGTGAGAGCATCAGTGGACAAAGCGAAAAGGCCTTTGTTCTTAACAAATGACTATTTCTACACAACCATCAACGACACCCCATTCAGTTTTGGTATGGTTCTGACAAGGGGTCACGGACAGCTGATGTTCATGGGGACAGTCTCTGTGGAAGAGGGCCTGCATGACCTGACGTCCCCTGATCTATCCATATCCAATGAGTGGACGTATTGTGAGACAGACATTGATCCTCACCACCGCAAATACTCTCAGCTTCAGGCTGTCATTCGCTACCTGCAGGGGAAGGAGCCTGACCTGGAGTGTGACGAGGTGCTGCTGCAGCAGACTCTGTTTGATGCCGTAGTGACAGCCCCCTTAGAATCCTACTGGCAGGCCATCATGCTCAATGCATCTGGgatGGAGATGGGTGTGGAGACAGCCTTTCTGGGAACCCGCTCTGGCCTTATCCGGCTTACCAGATACACTGGCATAGAGACCAGGGTCGCCAAAAAGTTCTTGACTCCAGCTGATAAGGACAACCTGTTTACCGTGGACCATTTCCCCCTGTGGTACCGCCTGGCCATGGAGAACCCCCCTGGACGCTTCATCTACTACATCCCTGTGGAGGACAAAGACAACAGAGACAAGACAGGGGTGTCAAAGTATGTCATAGCCGCCACAGCTGTGACTGTGTCATCGGGAGGCAAGATGGCCATGGCTGGAGCCATTGGGGTGCAGATGTCCTTGGAGATGCTGGAGAAGAGGCTATGGACCATTGCCTTTCAGCCCGCTGACACAGACtgtACTGACGTGGAAGGTGTCTGCCCTCTCAGCTGCCAGAGCACTGATGTCAACTGTTTCCTTGTGGACAGCAACGGCTTCATCATAGTCTctaaagagaggtcagagGTCGGACGTTTCTTTGGGGAAGTGGACGGGTCTGTGATGGCAGCGTTGATTAAGTCGGGCATGTACAAGAAGGTGTCGTTGTATGACTACCAGGGAATGTGCAGATCAGGACACAGTCATTCCAGTAGTGCTCGCCCTCTGCTCAGCCCTTTCTATGGCCTTGCTGCAGTGATTAAATGGTTCTTCTCTCACATGTTGATGTTCTTACTGGAGTTCAACTTCTGTGGGCTGTGGCACTCGGATTACGTTGTAGACGCCAAGGCTGGCTACCATACATCCCATAAAGCAAAGAGGACGGACGCGTTGCAGCCCTGTGACACAGAGTACCCTGGCTTCATGTTAGACAACTCCATCAAAGAGACCAACAGCCTCCTCAAATGTGGACGCTGTCAGAAGATGTTTGTGGTGCAGGCAGTCCCTGACAGTAACCTGGTGTTGATGGTGGTTCAGGCGGACTGTGACTGCTCCCGGCAGTACTCCTCCATCACTCTGGAGCCCAAAGAGGTCAAATACAACGCATCAGTCAAGTGTAACAGGATGAAATCTCAGAAAGTCCGGCGGCGCCCAAAGTCCTGCCATGCCTACCATCCTAAGGAAAATGCCAAGGACTGTGGAGGAGCGTCAGAGATCAGCCTATCGGTGGCGCTCTTCTTGGCTTCTCTGGCTACCTCATTGGCCCTGCGCAGATGGACTTAACCAGGCTCCATCTCTCTTATGGCCTGTGGTTCTCAGATGGACATGAGAATGTAGACTAAACAATCTTAACATTCCGTTTTGTACATTTTCTAAAAGACCTATAACTACGTAAATAACCTACTAACACAGTAGTTCAAGTCAACTCTGGAGTAACAATAAAAGGGCTATTTTCTCATAAGACTCCTTTTCCCACACCGATAGAGAAAGAAACTAACCAGTCCTAACAAATACCTCAATTTCTTTTGTACGAGCCATGGGGTATGAGTTTGTGGACATGTGAATCGAAGGGAGAGACTGTTATTTTCATGGAGACACTGACATGGTAGAATGATTTCAGCCCTCTACTGGGCAATCCATCTTAGTGCAGACTGAAGGACAACCACCCTGACAACCTCACTCAGCTGGAGAACTGTTGCCCTAATATGTCCATCAACAGGAAAATAGAAACATTTTCTCATATCTCATTTTTATACACAGTAACATTAAGATGTACTGTATTGATACTGTTGTTTTTTTGTATGTTGAAATGAACTACCGTACCAAAACTTTGTGCTACAAAAGAGGAAGGAATATTCATCTCTAATTTATAAGCAATAATGTATGTCGTGACACTGGTGATTTGAATGGAACATGCTGGTGACAATTCCCGCAGAACTGAGGTGAGATCTAGTACAGTTTATGATTACTGGTACGCATGAAGCTTTATGAAATAATTGTCAGGGGGAGGAGACTGTTAACAATAACCTACTGTCAAATGTGTATCAGAACATTACATTGTTTCTGTCTTATTCCCAACCCCGCTGGACACAGGTCTCAATACAATCCGTATCGCTGTAGTCCAGCGCTCCgattgagctgacatatgcagCCTCCTCAAAAGTGGGAACATTTCCTTTAAATTTAAATTGCGCTATAGCGACAAATTATGGCAATACGGATTGAATTTAGCCCATACTTACATGAGaagctgagagcagcacaggaTCATCCAGAGCAGCATTATCAAATCAAacccattttattggtcacatacacgtgtttagaaGATGTTAcggcgggtgtagcgaaatgcttgtttcttGCGCCAAAAtgaggggttaagtgccttgctcaagggcacaacagcagTAGATGGCACCAGAGATTTTGATGCCAGCAACCCTCTGGCCCAGTTCTTCCCTGTAAAATGACTACAAGCTCACTGTTGGTAAACATTATGATGTATTTCAATATGTGAATCATCGAAACGATCTGCATATAGTAGCTAGGACCACATATGAGATACCATAGGTGCTTTGAGACATTGAGGAATATTA

Function

NR:

description
PREDICTED: voltage-dependent calcium channel subunit alpha-2/delta-4-like

GO: NA

KEGG:

id description
K04861 CACNA2D4; voltage-dependent calcium channel alpha-2/delta-4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968581.1 True 4457 mRNA 0.48 35 13582717 13650727

Neighbor

gene id symbol gene type direction distance location
tnnt3a LOC100136357 coding upstream 135241 13435735 ~ 13462187 (+)
LOC110521363 LOC106584524 coding upstream 149689 13391307 ~ 13433028 (+)
LOC110521359 LOC106584521 coding upstream 226765 13350858 ~ 13355952 (+)
LOC110521361 LOC100136569 coding upstream 233238 13348157 ~ 13349479 (+)
LOC110521358 LOC100136571 coding upstream 240693 13336996 ~ 13342024 (+)
etfbkmt etfbkmt coding downstream 162578 13813305 ~ 13814906 (+)
LOC110521381 NA coding downstream 264159 13914886 ~ 13945122 (+)
washc4 kiaa1033 coding downstream 305788 13956515 ~ 13981809 (+)
lrrc10 LOC106584482 coding downstream 354731 14005458 ~ 14008111 (+)
fnbp4 LOC106584504 coding downstream 360381 14011108 ~ 14031100 (+)
G2202345 NA non-coding upstream 178330 13403806 ~ 13404387 (+)
LOC110521355 LOC106584515 non-coding upstream 281111 13292190 ~ 13301806 (+)
G2202201 NA non-coding upstream 327395 13254417 ~ 13255322 (+)
G2202219 NA non-coding upstream 357507 13225002 ~ 13225210 (+)
G2202202 NA non-coding upstream 359650 13222460 ~ 13223067 (+)
G2202568 NA non-coding downstream 128 13650855 ~ 13652185 (+)
G2202649 NA non-coding downstream 57133 13707860 ~ 13708593 (+)
G2202690 NA non-coding downstream 110337 13761064 ~ 13761522 (+)
G2202702 NA non-coding downstream 131847 13782574 ~ 13783830 (+)
G2202720 LOC106584536 non-coding downstream 152046 13802773 ~ 13806778 (+)
G2202196 NA other upstream 381226 13201138 ~ 13201491 (+)
LOC110521323 LOC106561036 other upstream 1785782 11683849 ~ 11796935 (+)
G2198837 NA other upstream 2438045 11144213 ~ 11144672 (+)
G2203653 NA other downstream 908720 14559447 ~ 14567103 (+)
G2203973 NA other downstream 1621318 15272045 ~ 15273733 (+)
G2205546 NA other downstream 2579444 16230171 ~ 16232396 (+)
G2206179 NA other downstream 3512910 17163637 ~ 17164159 (+)
G2206268 LOC106584433 other downstream 3524690 17175417 ~ 17175872 (+)

Expression


Co-expression Network