LOC110521369 (LOC106584531)


Basic Information

Item Value
gene id LOC110521369
gene name LOC106584531
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 13615257 ~ 13634264 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036969399.1
cacacacacacacacacacacacacacagctagactGAACCTCTGGACAGTAGTGTGCTCCAACTACCAGGAAAGCACAGTCGGTAAGCggacctgagaggagaggagaggggagagagagagagagaccgccccgagaggcagagagaaggaggaagcagaggagaagacaggagttGAAGAGCATGTGTTTGTTCTCTTGGGACCCCAGCATCCAGGATACACAGAGATACAACAGGAACCAGGACCTTTCTCCAAACACCTCCGTTAGCAGCAACATCAGATGAAGCATATTGTTTTTTTCCACACAGGGAGGATAAAAGATACTACTGAAGCACTTTTCTTATTTAAGAGCTATAGCACTTTGGAGACTGAAACATCACCAGATGctggtgGGTGGCACAAGGAGGTCACCTACTGAGAGAGCCCGATGCCAGTGCCAGTCTAGGGTGGCAGCAGACATGCAGCCCCTCGACTTGCCTAGGAGTACACACCTGGAGAGCCTGGtcTTTGCAGCCCTGCCCAGTCTGCTGCTAGTACTCCTGGGTCTGCTAGAGGCAGCTAGCGGTTGTCCCACTGTGTGCATCTGCAACAGCAACGGCACAGACTGTACAGGCCTGGCTCTGCTCTCCCTAACCACCATCCTGCCCCTGCTGCCCCAGGACACCCGCACCCTCCGCCTGTCCCACAACAACCTCTCCTCCCTGGGCGACGGGGCCCTGTCCAACCTCAGCGCTCTGGAGCTCCTGGACCTTTCTGACAACCACCTCTCCAGCCTGCAACCAGGGTCTTTCTCCGGCCTCAGAGGCCTGCAGTGGCTCAACCTCTCAGGGAACTACCTGGGTGACTGCCCCCTACTTACCCCTACAGTCCCCAGTAACCAAACGGAGGTTACCCAGTGTAACGGTAGTCGCTGGGGGTTGAGCCGGGAGCTGTTCCAGGGTCTTTGGATACTGAAAGGGCTGGACTTGTCCCTGAACGGCCTGGTAGTTTTTCCCAATGGGCTGCTGGATGGGCTCCAGGGCCTGGCCTGGCTGTCTCTGACTGGAAACAAGCTGCGGAGCCTGGACAGAGCCACCTTCCAGCCCCTGGGCAGACTGCTGAGCCTCCAACTGGCAGGCAACCCTTGGGAGTGTGACTGCAACCTGAGGGACTTCAAGCACTGGATGGAGTGGCTTCTGTACAGACGTCAGTGTTATGTTGTGTATTGCTTCAAGCTTACAGTGTTTCATGTACAGTCAAGTCAGTTTGGCCTTTGTTCCATGTCATGTACTAGTCTGATACTGTGTAATGTATGTTATTGATCTGTAAATGAGCTTGATTATCTATTGATCTTGCTAGAGATCCACTAGATCCCTATGTGTGTTTCAGACGGGCAGGTGGATGCTGTGAAGTGCAACCTACCGAAGGAGCTGAGGGGGCGGGACATCCGCAGCATCCCCATAGAGATGTTCAACTACTGCCTGCAGTTGGAGAACCAGGCCAGTGTCCATGGCTACGACGGGCCCCGTGGGGGGCGCCCACCCTGTGTCGGTCGGATCAATGGGCCCATGAACGGGCCCCAGGCCAACCAAGAGGACTGTGTACGCCAGCGCTACCGACCCATTAGCGTGCGCAGGGCCTGGGGGACTCAGATCGTGGcggcatgtgtgtgtggtgtggtgtgtgtgatgatggtggtggcgGCCACCTACGGCTGTATCTACGCCTCTCTCATGGCCAAGTACCAGAGGGAGCTGAAGAACACATGGCAGCCATTGATggctggggagggaggggaggagacagacgtCGAGGACGGCGTCTTTCCTTCCTCCCCAACATCCCCAGCTGAGCCAGAACCAGAGTCCAGTCCCATAGTCCACACATACAGAATAACAGGCTTTTGACCTTTGTTTCTCTGACTGGCTGACATTCCGGTTGCAAGGATTCAGGGGGGGCTGCATTCCCTGACTGTGTGTCTTACTACCCAGTGCTCCAGGGCATTCTAGACTAGGGAATGTATAGAGCTGAGAAAGCATATCTCTGCTGCACTTTGCTGGTGTTCGAGGCATACCGACACAATCGTACAGTTGATCGTCAAATGGAAAACTGGAACTCTGCATTGCTTCAAGACGTGTGGATGCTATGTGATTGGTTCTTTAGTCAGCTCTCCAACTGTGTGGTGGAGGTTCTGGTACCTCTGCACCTTGGTTCAAAGACTTTCCTAGAAATCGTCTTTGAAATCCATTATTATTGTACGTTTATTCCTTGATCCGACTTTCCATCAAAGTTATTTGTGTTTCAAGCAAAAAATGCCAATCGATCAAATCCCtgtctaatgtaatgtatctgcTCCTAACGTTTTGATATAAAAGCCCAGGTTAACAATCCCAGTAGTGGTTGTCGCTCAAATAGTTATAGTACACATGAATGTACAAGAATATAGTACACAATGTTCTGTGGAATCAGTGTTAGACAGATGCAGTCTTGTGTATCAGACCTGTGCTCACGTGCAGTGACTCAATCCTCTCTACTAAATTAATATTTCCAAGTCATGTCAATGTTCATATCTGTACAGAGTAAGCCTGCTTTCAAAGCCATACAATACAACAGCAAACTACTGACCTCTAGAGGATGTTATGATAACAGCAGCTGAAGAGAGTCAGTCTCATGGCTAGCAGCCATATTCATTGCGAACTGAATCTAGTTGGCAACTATTTCCATTTAACCATTTTGAACTGTCAAAGAGATCAGCACTGACCTAGAAAAATGTACATATATCAGTATCTCATTAGTCCTTTAATCGttatttctgtctctgtgttaacaTTACAAATTTGCTTACAAAGTTTTGCTCAAGAAATAACGATAATGTGATATTCTGTTAATCATGCTGATGACAATAAAGCATT

Function

NR:

description
leucine-rich repeat and transmembrane domain-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036969399.1 True 2894 mRNA 0.50 3 13615257 13634264

Neighbor

gene id symbol gene type direction distance location
LOC110521367 LOC106584527 coding downstream 140943 13462590 ~ 13474314 (-)
myod2 myod2 coding downstream 153813 13459334 ~ 13461444 (-)
prr33 LOC106584523 coding downstream 180180 13426651 ~ 13435077 (-)
LOC110521353 LOC106584518 coding downstream 345136 13267984 ~ 13270121 (-)
drd4a LOC106584511 coding downstream 428552 13159502 ~ 13186705 (-)
LOC110521368 LOC106584530 coding upstream 16594 13650858 ~ 13666753 (-)
urahb urah coding upstream 32636 13666900 ~ 13671199 (-)
LOC110521370 LOC106584532 coding upstream 38384 13672648 ~ 13736659 (-)
LOC110521372 LOC106584534 coding upstream 119856 13754120 ~ 13781446 (-)
LOC110521373 LOC106584535 coding upstream 148253 13782517 ~ 13802632 (-)
G2202538 NA non-coding downstream 88964 13525971 ~ 13526293 (-)
G2202406 NA non-coding downstream 102799 13399366 ~ 13512458 (-)
G2202504 NA non-coding downstream 126504 13485719 ~ 13488753 (-)
G2202449 NA non-coding downstream 252120 13362884 ~ 13363137 (-)
G2202924 NA non-coding upstream 12156 13646420 ~ 13646703 (-)
G2202925 NA non-coding upstream 14127 13648391 ~ 13648791 (-)
G2202885 NA non-coding upstream 116889 13751153 ~ 13752112 (-)
G2202996 NA non-coding upstream 208501 13842765 ~ 13842976 (-)
G2203004 NA non-coding upstream 219904 13854168 ~ 13854827 (-)
LOC110521347 LOC106584546 other downstream 516954 13094306 ~ 13103545 (-)
LOC110521346 LOC106584547 other downstream 527734 13078925 ~ 13087584 (-)
G2201542 NA other downstream 1365275 12248951 ~ 12249982 (-)
G2199633 NA other downstream 2600289 11014527 ~ 11014968 (-)
LOC110522734 celsr1 other downstream 2684604 10918587 ~ 11012095 (-)
si:ch211-106e7.2 LOC106584539 other upstream 228240 13862396 ~ 13897713 (-)
G2203060 NA other upstream 376889 14011153 ~ 14012512 (-)
G2203363 LOC106613263 other upstream 540177 14174441 ~ 14244462 (-)
G2204129 NA other upstream 890700 14524964 ~ 14525468 (-)

Expression


Co-expression Network