LOC110521368 (LOC106584530)


Basic Information

Item Value
gene id LOC110521368
gene name LOC106584530
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 13650858 ~ 13666753 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598871.2
TTATTGGGGTCCTTAGTGGTCTTGCTCTGACATTCTTGCTCTTGCAGTATGTAATGACTGTGGCTGTTATCCAACACTGTCACACTGATGAACTGTAGGAAGACAGAATATCTAGAACATTTGATATTTTTTCAAAGAGTGGAGGGCAAGTGCCAGCGGGAGAATGGCTCAAATGTTAGGGCTTCTCTCGACGGCTGCTTTGTCTCTACGGATCGCAGTGAGAGCATGTGTACGCAATTCGGTGTCAAGAAACTTCTCTGTGCTGCCCGGCTATCGTGGCTCCACGGTCAGGAGGCTTGCTCAAAGTAAGTTATTGTCACCTGATGGAATCTTTACATCTCATGGACTACTGTACTCCACTGAGCCGCCAAAAGATGGTAAAGGGAAGGAATCAGGTGGCGGTGGAGGCGGAGGGAAAAGAGGAGGCGGGAAAGATTGGTGGAGCCGCATGCAGAAGGGTGACATCCCATGGGATGAGAAAGACTTCCGTGCCCTGGCAGTGGTACTAGCTGGGATATCCTCTGCCACGCTCTACTATCAATTCAGAGACACAGGCAAGGAGATCACTTGGAAGGACTTTGTCCAACGCTACCTTGGTAGAGGAATGGTCGAGCGTTTAGAGGTTGTCAATAAACAGTATGTCCGAGTCATTCTAGTACCAGGAGCAGAGGCTGATGCGAGCTATGTGTGGTTTAACATCGGTAGTGTGGACACCTTCGAGAGGAACTTGGAGGCAGCTCATCACGAGCTTGGCTTGGAGCCCTCTCATAGGGCAGCTGTCATGTACAACTCCGAGAGTGATGGGTCATTTATGATGAGCATGATTCCAACCTTGCTGTTGATTGGTTTCCTGCTTTTCACCCTGCGGCGGGGACCAATGGGAGGAGGCGCTGGGGGTGGAAGAGGTGGTCCCTTCAGCATGAGCGAATCAACAGCAAAAATGATGAAGGACAACATCAACACCAAGTTCAAGGATGTGGCTGGCTGTGAGGAGGCCAAGCTGGAGATTCTGGAGTTTGTTAACTTCCTGAAGAACCCCCAGCAGTATCTGGACCTGGGGGCTAAGATCCCAAAGGGTGCTGTGCTCTCTGGACCTCCAGGCACAGGCAAGACCCTGCTGGCCAAGGCCACAGCAGGAGAGGCCAACGTCCCCTTCATCACTGTCAACGGCTCTGAGTTCCTGGAGATGTTTGTGGGTGTTGGGCCTGCCAGGGTGAGAGACATGTTTGCCATGGCCCGGAAGAACGCCCCCTGTATTCTGTTTATAGATGAGATAGACGCCGTGGGTCGCAAGAGGGGCGGGGGGAATTTTGGTGGCCAGAGCGAGCAGGAGAACACTCTCAACCAGCTGCTAGTGGAGATGGATGGATTCAACACCAGCACTAATGTTGTCGTCCTGGCTGGCACCAACAGACCAGACATCTTGGATCCTGCGCTCATGAGGCCTGGCAGATTTGACAGGCAGATTTACATAGGCCCACCTGACATCAAAGGCAGGGCGTCCATCTTCAAAGTGCACTTACGGCCCATCAAACTGGACCCTGCTATGGACAAAGACGGACTGGCCAGGAAGATGGCTGCCGCCACACCAGGCTTCACAGGAGCCGACATAGCTAACGTGTGTAATGAGGCAGCCCTCATTGCTGCTAGACATCTCAACCCACATGTGGAAGGGAAACACTTTGAGCAGGCCATCGACAGGGTCATTGGAGgtctTGAGAAGAAGACCCAGGTTCTGCAGCCCAATGAGAAGAAGACTGTAGCGTACCATGAGGCTGGCCACGCCATAGTGGGTTGGTTCCTGCAACATGCTGACCCACTGCTGAAGGTGTCCATCATCCCCAGAGGGAAGGGTTTGGGCTATGCCCAGTACCTCCCCAAGGAGCAGTACCTGTACACGCGGGAGCAGCTGTTTGACAGGATGTGTATGATGCTGGGAGGACGTGTGGCTGAACATGTCTTCTTTGGGAAGATCACCACTGGAGCCCAGGACGACCTGAAGAAGGTCACCCAGTCAGCCTACGCACAGATAGTGCAGTTTGGGATGAGTGAGAAGGTAGGCCAGGTGTCTTTCGACCTTCCTCGGCAAggggagatggtgatggagaagcCTTACAGCGAGGCCACTGCAGAGCTCATAGaccaggaggtcagagacctggtggacAGCGCCTATCAGAGGACCatggagctgattgtggacaagAGGGAGTGCGTGGACATGGTGGGGAAGCGTCTCCTGGAGAAGGAGGTCCTGGACAAGGCAGACATGCTGGAGCTGCTGGGGCCACGACCATTTGAGGAGAAGTCAACCTATGAGGAGTTTGTGGAGGGGACAGGCAGCTTTGAAGAGGACACCAGTCTGCCAGAGGGCCTGAAGGACTGGAACCAGGAGAGAGGGGACCTAGCTGAGGAGCTGGACACAGCCAAGGAGAAACAGGCCCAATAGGCAGCACAAACGGTGACAGGCAACCTCTTAACCTAACCTCTGTCTTAGCACACACCAGTCATGTAGCCTAGGCAGAGAGGAGGGTTGGGTGACTTAGCATAGTACCCTGCCCCCGGACATATTTATCTGAGTGCAAAACAAACTTTCAATCAGAATGCAAATCTTTCAATGCCTTATTATTGGCCATGTTGGAGGTGCGCCTCATGGTACTCAAAGGTTCATTTAATGGACAGTGGACACATTGTGTTTGAGAGATTTTATCTTTTTATGAGTTGCATGTGTTCTCTTTCTCCACATAAATAATTTTGTCAACTGAATCATGTACATTTGCCTCGTGCTTTGATATCTTCAGCTATTTATTTCAATAAAAGGGGCTTCCTCCCAACTGTATTTCTTTCCCTCCCACAAATGAATGCTACATTTCAAAACATGTCGTTCATCTCTATATACCAATGACATAAAGGTGCTGGTTATGAACAATGTTAATATCCTAGTTCATCAAAATGCTACTGGCAGAAATATAAAAATATACTCCCCTAGATGTGTTGAAATGTGCACTGCCTCTTCCATCTCTCAGCCTTGCACGGGTAATTTGTGATTAAGCCCTCACACTACAACTGTATAGTGTGGTGTTAAGCCcagtttatacctggtgctaacatggTTCCTTTTTCCTGATCTTGTCTACATTCCGATTGTGCCCGTATTTCCAGAAATGTGTCTATTAGCCATCCACTGTTTCTGGATTGTGACCAGATCTGTTCCTACTTTTATGCAAATGTTTTCACAGCTATCCTTTCTAAATAATATTTATTGTAAAACCTATTGATGTACTCAGTCAATGATGCCACTTAGAGGGCAGAATAATTATTTTAAATGGTTTCTCTGTCCAGATCTGTCTACACTTGCAAGATATTCAGACACAATGTGTGGGCAGGATGATCTGATCACAATCGGATCACAATGTGTTTTGATTGAGCCCACATTTTTAGACGCATGTAGACAAGAGCAGGAAAAAGGACGCAAGTTGGAATCATGTATAAACTGAGTTTTAGATGTTCTGCTGAGCCAGTAATCTGCTGTTGTTGATGTACAGTATCGCTAGTAGCATACATCTCTACACACATTTTATCAAATTATTTTATTGGGTGATCTGTGTGAATCAGGAAGTTGCTACCTCACTTTAAAGCAatctattcaactatatttctcATAGGTTTGGGAAAATTGTCCCCCTAGATATTTCAggatttccagtatactgtagttCTGTCATTACTACTGGTCACCACTGAAGTTGTCCAACAGTTTAGAATTACTGATGTAATAACCTATAATACATTTAGTTTAAAATGTGGTTGTGTGTAGTTGGTGTTTTGGATTGTGCACTGAAGGTAAGTTTGCCTGTTACTGCACAGTCAACCTCTTGTTCTCCAGTTACTGGGGATGGACAGAAAGCGCTTTTCCATTTGTATTATAAAGAAAAAGATTCTGTGTATGAAAGCAATGGCTATACTACAatgtataaaacatgtttttgtttgataaaataaatTCAGTGGTGAATTT

Function

NR:

description
AFG3-like protein 1

GO: NA

KEGG:

id description
K08956 AFG3; AFG3 family protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598871.2 True 4018 mRNA 0.48 16 13650858 13666753
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110521369 LOC106584531 coding downstream 16594 13615257 ~ 13634264 (-)
LOC110521367 LOC106584527 coding downstream 176544 13462590 ~ 13474314 (-)
myod2 myod2 coding downstream 189414 13459334 ~ 13461444 (-)
prr33 LOC106584523 coding downstream 215781 13426651 ~ 13435077 (-)
LOC110521353 LOC106584518 coding downstream 380737 13267984 ~ 13270121 (-)
urahb urah coding upstream 147 13666900 ~ 13671199 (-)
LOC110521370 LOC106584532 coding upstream 5895 13672648 ~ 13736659 (-)
LOC110521372 LOC106584534 coding upstream 87367 13754120 ~ 13781446 (-)
LOC110521373 LOC106584535 coding upstream 115764 13782517 ~ 13802632 (-)
LOC110521374 LOC106584536 coding upstream 135995 13802748 ~ 13810630 (-)
G2202925 NA non-coding downstream 2067 13648391 ~ 13648791 (-)
G2202924 NA non-coding downstream 4155 13646420 ~ 13646703 (-)
G2202538 NA non-coding downstream 124565 13525971 ~ 13526293 (-)
G2202406 NA non-coding downstream 138400 13399366 ~ 13512458 (-)
G2202504 NA non-coding downstream 162105 13485719 ~ 13488753 (-)
G2202885 NA non-coding upstream 84400 13751153 ~ 13752112 (-)
G2202996 NA non-coding upstream 176012 13842765 ~ 13842976 (-)
G2203004 NA non-coding upstream 187415 13854168 ~ 13854827 (-)
G2203006 NA non-coding upstream 189429 13856182 ~ 13856472 (-)
G2202992 NA non-coding upstream 192046 13858799 ~ 13860314 (-)
LOC110521347 LOC106584546 other downstream 552555 13094306 ~ 13103545 (-)
LOC110521346 LOC106584547 other downstream 563335 13078925 ~ 13087584 (-)
G2201542 NA other downstream 1400876 12248951 ~ 12249982 (-)
G2199633 NA other downstream 2635890 11014527 ~ 11014968 (-)
LOC110522734 celsr1 other downstream 2720205 10918587 ~ 11012095 (-)
si:ch211-106e7.2 LOC106584539 other upstream 195751 13862396 ~ 13897713 (-)
G2203060 NA other upstream 344400 14011153 ~ 14012512 (-)
G2203363 LOC106613263 other upstream 507688 14174441 ~ 14244462 (-)
G2204129 NA other upstream 858211 14524964 ~ 14525468 (-)

Expression

LOC110521368(LOC106584530) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 25.
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LOC110521368(LOC106584530) Expression in each Bioproject

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LOC110521368(LOC106584530) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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Co-expression Network