LOC110521381


Basic Information

Item Value
gene id LOC110521381
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 13914886 ~ 13945122 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473129.2
GTTTTCACATAGCCAGCCGTTGGCCGATACTGAGACTTAAGGCATTGTGGTTGGGCCAGTTCCTGTTTATGTGCTGGCTACAACTAGGAAGAAGGTGATGAAGACAGGTGTGGGAGAGGTGCTGCCCTTCATCAAGTGGATTGTGTACAGGAAAATCAGGTGACCCGGTACGACCAACAGGAGCAGCACCTGTGCAGAGCGATGATTGGCTCCTGTCAGAGATAAACCCTACTACATACAATGCCAACCAAGTCTCCATTCAAGACAAGCATCTCATGTCTACAACTGTCAATCATTCCCTGCCATGTATCATCTCCATTATCGGAATCTAGAAAGACTTTTAAACTGAACTGCATCTCTGCCTCCAGCTGCTCAGTAGATGGGCATCTCCATAACCGTCACCTAAACCTCAGTGTTTCCCTTGGGGACCCTTATTATTGGAGGACATGTAGGAAATGTATAAAAGCACCCCTTGGTCATGTTCAGGTGAGAGCTTTTTACTGTGAATGTCCTTTGTGTGTACAGGTTGTATGGTGTTACTGGTGGTTTATTTCTGCGAGGAACCATTTTGTGACTATGTTGTCTTGAAGAAATGTTTGGGGTGTAGTCGATTGTTCTGAATGGTATATGTTGACTTTGACCATCAGTGAGTTTTTCCCCTGAGTGACAATATTTCTGATTTTCATTATGTAAGGCCACTGCAATCATGGCCTTCTATTTGAAGTCACTTTGTTTGGAGAGGCATTGCTGGTTTGAGGTACAGGCTGTGCGTTGCTGGTTTGAGGTACAGGCTGTGCCCTCCAAAAAGGGCTCTGTCTAAGTCAAGTCATTTCTACAATATCTATTGTTTATGTCAATTCTGTGGTTAACTGTTCTTTCTTTTGTACCATCAGAAGTACAGTACTGTTTGTCACTGTTTTTGGTAATATTCTGAACTTGGTCAATTTAATTTCTGTGAAAGCACTCTTGTATTTCAGAAAGCGGTCTAGTGGAAGTAACAGATCTATGAAGTCATTTTGGTGTACTCTTGTTAATGTGTTATTTATCTGTGTCAAACAAGCAAAACTAATCCTCAGCTTTACTAAAATTGGCTTGTTCTTTATCTGCCTCTGTAGTGTTTTCCTTTAATGGGTCTAGAACCTGTGTCTAATGTTTTAAGATGTTACAATTTGTCAGAACTTTTGCCCCAACTCAATAGGTGGCCTGTCATGAACCTGTGTGTCTTATGTTCTGGTTTAGTTGTTCCCCTAATTAAACAGTAACTGGGGTAGTCTTGAAGTTGTGCCAGTTTAGCTAACCCTAGTCGGCAGGTGTTACCACAATATgctacagtcatgtctgcaaaaacactacagtgaatgcTATAGTATACCACACTCATGTTTGCAAAAAACCAcaacagtgaatactatagtatataaatataatactactgtatttagaccatagtatactatagtattttttaatGTGGGTTAGCTGTAAATGTGTAATATGTTGGATGTTTGAACTAGGACCCCTTTTTTTGTATTATTCATCAAATttctaaatgcattgtatccacaTTTGTGCTTATGTGTTTTTaaatagtca
>XR_005040862.1
ttgtcacatgcgcggaatacaacaggtgaagcagaccttagtgaaatgcttacttacaataggctctaaccaatagtgcaaaaaaggtattaggtgaacaatagGGCTACAACTAGGAAGAAGGTGATGAAGACAGGTGTGGGAGAGGTGCTGCCCTTCATCAAGTGGATTGTGTACAGGAAAATCAGGTGACCCGGTACGACCAACAGGAGCAGCACCTGTGCAGAGCGATGATTGGCTCCTGTCAGAGATAAACCCTACTACATACAATGCCAACCAAGTCTCCATTCAAGACAAGCATCTCATGTCTACAACTGTCAATCATTCCCTGCCATGTATCATCTCCATTATCGGAATCTAGAAAGACTTTTAAACTGAACTGCATCTCTGCCTCCAGCTGCTCAGTAGATGGGCATCTCCATAACCGTCACCTAAACCTCAGTGTTTCCCTTGGGGACCCTTATTATTGGAGGACATGTAGGAAATGTATAAAAGCACCCCTTGGTCATGTTCAGGTGAGAGCTTTTTACTGTGAATGTCCTTTGTGTGTACAGGTTGTATGGTGTTACTGGTGGTTTATTTCTGCGAGGAACCATTTTGTGACTATGTTGTCTTGAAGAAATGTTTGGGGTGTAGTCGATTGTTCTGAATGGTATATGTTGACTTTGACCATCAGTGAGTTTTTCCCCTGAGTGACAATATTTCTGATTTTCATTATGTAAGGCCACTGCAATCATGGCCTTCTATTTGAAGTCACTTTGTTTGGAGAGGCATTGCTGGTTTGAGGTACAGGCTGTGCGTTGCTGGTTTGAGGTACAGGCTGTGCCCTCCAAAAAGGGCTCTGTCTAAGTCAAGTCATTTCTACAATATCTATTGTTTATGTCAATTCTGTGGTTAACTGTTCTTTCTTTTGTACCATCAGAAGTACAGTACTGTTTGTCACTGTTTTTGGTAATATTCTGAACTTGGTCAATTTAATTTCTGTGAAAGCACTCTTGTATTTCAGAAAGCGGTCTAGTGGAAGTAACAGATCTATGAAGTCATTTTGGTGTACTCTTGTTAATGTGTTATTTATCTGTGTCAAACAAGCAAAACTAATCCTCAGCTTTACTAAAATTGGCTTGTTCTTTATCTGCCTCTGTAGTGTTTTCCTTTAATGGGTCTAGAACCTGTGTCTAATGTTTTAAGATGTTACAATTTGTCAGAACTTTTGCCCCAACTCAATAGGTGGCCTGTCATGAACCTGTGTGTCTTATGTTCTGGTTTAGTTGTTCCCCTAATTAAACAGTAACTGGGGTAGTCTTGAAGTTGTGCCAGTTTAGCTAACCCTAGTCGGCAGGTGTTACCACAATATgctacagtcatgtctgcaaaaacactacagtgaatgcTATAGTATACCACACTCATGTTTGCAAAAAACCAcaacagtgaatactatagtatataaatataatactactgtatttagaccatagtatactatagtattttttaatGTGGGTTAGCTGTAAATGTGTAATATGTTGGATGTTTGAACTAGGACCCCTTTTTTTGTATTATTCATCAAATttctaaatgcattgtatccacaTTTGTGCTTATGTGTTTTTaaatagtc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473129.2 False 1593 mRNA 0.40 3 13914886 13945122
XR_005040862.1 True 1621 mRNA 0.39 3 13938673 13945121

Neighbor

gene id symbol gene type direction distance location
etfbkmt etfbkmt coding upstream 100139 13813305 ~ 13814906 (+)
LOC110522741 LOC106584529 coding upstream 264159 13582717 ~ 13650727 (+)
tnnt3a LOC100136357 coding upstream 467410 13435735 ~ 13462187 (+)
LOC110521363 LOC106584524 coding upstream 481858 13391307 ~ 13433028 (+)
LOC110521359 LOC106584521 coding upstream 558934 13350858 ~ 13355952 (+)
washc4 kiaa1033 coding downstream 11393 13956515 ~ 13981809 (+)
lrrc10 LOC106584482 coding downstream 60336 14005458 ~ 14008111 (+)
fnbp4 LOC106584504 coding downstream 65986 14011108 ~ 14031100 (+)
LOC110521386 LOC106584503 coding downstream 210387 14155509 ~ 14164819 (+)
LOC110521387 LOC106584502 coding downstream 246002 14191124 ~ 14230103 (+)
G2202780 NA non-coding upstream 460 13913976 ~ 13914426 (+)
G2202775 LOC106566315 non-coding upstream 8773 13905278 ~ 13906113 (+)
G2202755 NA non-coding upstream 15510 13899082 ~ 13899376 (+)
G2202748 NA non-coding upstream 58268 13856230 ~ 13856618 (+)
G2202743 NA non-coding upstream 64106 13850541 ~ 13850780 (+)
G2202815 NA non-coding downstream 88290 14033412 ~ 14033714 (+)
G2202830 NA non-coding downstream 112793 14057915 ~ 14058236 (+)
G2202832 NA non-coding downstream 115415 14060537 ~ 14060746 (+)
G2202841 NA non-coding downstream 125445 14070567 ~ 14070790 (+)
G2203102 NA non-coding downstream 134704 14079826 ~ 14080150 (+)
LOC110521355 LOC106584515 other upstream 619726 13292190 ~ 13301806 (+)
G2202196 NA other upstream 713395 13201138 ~ 13201491 (+)
LOC110521323 LOC106561036 other upstream 2117951 11683849 ~ 11796935 (+)
G2198837 NA other upstream 2770214 11144213 ~ 11144672 (+)
G2203653 NA other downstream 614325 14559447 ~ 14567103 (+)
G2203973 NA other downstream 1326923 15272045 ~ 15273733 (+)
G2205546 NA other downstream 2285049 16230171 ~ 16232396 (+)
G2206179 NA other downstream 3218515 17163637 ~ 17164159 (+)
G2206268 LOC106584433 other downstream 3230295 17175417 ~ 17175872 (+)

Expression


Co-expression Network