lrrc10 (LOC106584482)


Basic Information

Item Value
gene id lrrc10
gene name LOC106584482
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 14005458 ~ 14008111 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598913.2
AGTGAGCAGCTCGTCATTTGCTACTGCTTAAGAGCCTAGGCAAAGCTCAGAgccacagacagaaagagagcgagccaACAGAGGTCTGTGCAAGGGTCTGGGAATATCGGCAACACCTTCACTAGGTGGGATACAACACTGACATACCACTATTTGGGGGAAAGCTGGCAAACATAATTTGGAAGTCTTATTGTGAGAAGGATCCCCTCAATCCACACGACTCTCTAAAGTAGGTGTTTTTATAGAGACCGTCAAGTATAATCTCCAGCTTTGTGGGGGTCACAACATGCATGGACTTATAGTTTGACATTGGAATTGCCTTTCTGGGTTTCAGTCAAGTTGTAAGGGATTCAGTCATCTAGTCATATTTCCAGTGTTATTCTTGTTGTTTTTTGTAAAATGGCACCAGACTTGACAGCTTCTACTGCTAATCATGACAGTTAGAGAATGGACTTTCCTGGACATTCTTCCATGAGCTGCTCACTCCCCCCTCAGCTCTGCGGCTGAACAAGAGTGGGTGTAGGGCAGCATCAGGGAGACTCAGGCTGCTCATGATGGGGAACGTCATACGTGGCGCTGTGGCCTTTATCCCCTCCGAGCGCTGCCAGCGTTTCCTGGTGGGCGACCTGAAGGAGATGCCTCTCGATCGGACACTAGACCTGAGCAAACTGCAGCTGCGTCGTCTTCCTGTGGCTGCCTGCCTGTTCAATGAGCTGGTCAAGCTCTACCTAAGTGGCAACAACCTGAGCACCCTACCTGCAGACTTGCAGGGCCTGAGGAAGCTGCAACTCTTAGCTCTTGACTTCAACTGTTTCGAGGAGCTGCCTGCGGCTGTGTGTCAACTACCTCAGCTTAACATCCTGTATCTGGGCAACAACCAGCTCTGGTGCCTCCCACGGGAGCTGGGCGAGCTGAAAGAACTTAATACCCTGTGGTTGGAGACTAACTGTTTCACTCAGTTCCCCAGTGTGGTCTGCGACCTCCCCAACCTCAAGACGCTCCATCTGGGGTACAACCAGATAAGCAAACTGCCCATGGAGCTCGGTGGGTTAGAGGAGCTGAGGAGTATCTGGCTAGCCGGGAACCAGCTGTGTGAGTTCCCGCCAGTGTTGCTCGCCATGCACCTTCTGGCCGTGATCGATGTGGACCGCAACAAAATCCGCCGCTTTCCTGGTCTGTCCCACTTGCAGGGGTTGAAACTGGTAATCTACGACCACAACCCCTGTGTGAACGCACCTGTGGTCGGGGAGGGGGTCAGAAGGGTTGGACGCTGGGCAGACAGCTCGGATGATGAAGAGGATGGTGAGGATGGGTTGAAAGTGTGTGAGACTCCGACTGAGGTGAAGGAACTTGCCCCAGAGGGACAACTGGACTCACTACTTGAAAAGGGTTGTGGAAGCATCTGACCTTCAACCGTGGCTAAACTGGGGAACAGGATGCCAGTCAAGTGGAGCACTTACTGAAGAACGACCACTTACTGGAGAACGGCCAGCAGCCAGGCCTGAtggtgttttgttccaaatatgGTCAGGCCAATGATATGGACCTAAACACAGATGACAAATAATAAGCTGTTACGATTGGTTTCCATCATGATGAAACATGGACCTCACGAAGAGTGCCAGGAGGAATCTGATATGAAGTTCTCTACTTTTACATCACTGTCTGCAGACTTGAAGGATTTTCTTTTGCTCGTATTCAGTTCATTTTACAGGTTATTTTCCAATTCAAAACATTTCTGGAGACATGAACCCCGgggcacaccacgtcatttcaacatggaAATTGGGGTAATATTGTTGCgatgttgatcaatgagatttcaacaTTTAATCACCCACTCAAAATGACAGACAGAGTTTGTAGtattcccaatgtgttatcactatggtTTCAACCATCTGAAAGCACAACAAAATTCCAATAGAAAAACCATGtctgatttttttgttttgttttcatctAAAATGTGTTATCACAGCACTTTAAACCATTTTAAAGCACAACAAAGTTAGAATGATAATACAATGTCAGATCTTTTGTATTTATACAACaacttaatgtgttatcactgtgcttcatctaatagcagaaccaaatgacttggattgcagttgagattacattaaaagtacatattGCAAGTGATCAATGATGTTagagattctgcacagattatttaAGCATTTGTGAAGAGCTCCACAGACCTGCGACCTTTGCATCTTGAACAAGCATGCTTTCTATGATTTCAGAAGAAGACATTTATAGTTACATTAGCGTAACCTCAACATGTGGTCATGGATGTGTTAGTCATTTTAAGATAGTATTTATTCaattacattagtttgtaaattaGCAAaaactttaggctatttactgtcttacaaaagtaatattgaattgtgtttggttgacaacgcaaccaaatatcaacatttaaaggatgTCTAATGCTTGCATAgtttcatctgagccactggctaaATCATATgcttaacattttatttttggtttagttggagATGTAAATCCAACATAATTTGTTAACTTGTCaacaagttaataggctatttactgtattgcaaaagtgatattgaattgtgtttggttgtcaacgcaaccaaatatcaacatttgaaggagatttacagtgg

Function

NR:

description
leucine-rich repeat-containing protein 10-like

GO:

id name namespace
GO:0001947 heart looping biological_process
GO:0060047 heart contraction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598913.2 True 2654 mRNA 0.44 1 14005458 14008111

Neighbor

gene id symbol gene type direction distance location
washc4 kiaa1033 coding upstream 23649 13956515 ~ 13981809 (+)
LOC110521381 NA coding upstream 60336 13914886 ~ 13945122 (+)
etfbkmt etfbkmt coding upstream 190711 13813305 ~ 13814906 (+)
LOC110522741 LOC106584529 coding upstream 354731 13582717 ~ 13650727 (+)
tnnt3a LOC100136357 coding upstream 557982 13435735 ~ 13462187 (+)
fnbp4 LOC106584504 coding downstream 2997 14011108 ~ 14031100 (+)
LOC110521386 LOC106584503 coding downstream 147398 14155509 ~ 14164819 (+)
LOC110521387 LOC106584502 coding downstream 183013 14191124 ~ 14230103 (+)
LOC110521390 LOC106584497 coding downstream 361915 14370026 ~ 14381434 (+)
LOC110521391 LOC106584496 coding downstream 375296 14383407 ~ 14427519 (+)
G2202765 LOC100194703 non-coding upstream 11680 13919300 ~ 13993778 (+)
G2202780 NA non-coding upstream 91032 13913976 ~ 13914426 (+)
G2202775 LOC106566315 non-coding upstream 99345 13905278 ~ 13906113 (+)
G2202755 NA non-coding upstream 106082 13899082 ~ 13899376 (+)
G2202748 NA non-coding upstream 148840 13856230 ~ 13856618 (+)
G2202815 NA non-coding downstream 25301 14033412 ~ 14033714 (+)
G2202830 NA non-coding downstream 49804 14057915 ~ 14058236 (+)
G2202832 NA non-coding downstream 52426 14060537 ~ 14060746 (+)
G2202841 NA non-coding downstream 62456 14070567 ~ 14070790 (+)
G2203102 NA non-coding downstream 71715 14079826 ~ 14080150 (+)
LOC110521355 LOC106584515 other upstream 710298 13292190 ~ 13301806 (+)
G2202196 NA other upstream 803967 13201138 ~ 13201491 (+)
LOC110521323 LOC106561036 other upstream 2208523 11683849 ~ 11796935 (+)
G2198837 NA other upstream 2860786 11144213 ~ 11144672 (+)
G2203653 NA other downstream 551336 14559447 ~ 14567103 (+)
G2203973 NA other downstream 1263934 15272045 ~ 15273733 (+)
G2205546 NA other downstream 2222060 16230171 ~ 16232396 (+)
G2206179 NA other downstream 3155526 17163637 ~ 17164159 (+)
G2206268 LOC106584433 other downstream 3167306 17175417 ~ 17175872 (+)

Expression


Co-expression Network