LOC110521390 (LOC106584497)


Basic Information

Item Value
gene id LOC110521390
gene name LOC106584497
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 14370026 ~ 14381434 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036969157.1
GACGGCCGTTGCGCTATCAGACGCGAGACAATGGTTTAGAAATTCTGTGATGGATCTGTCCCTAAATTTGATTCAATTTATGGGAACAAGCGCGCGCTTGAAAGGAGCACACATTTCCCTCCTATCACAGGGCTTTACTGCAACTGACCCCACCCATCTCAGATACCGCAGCTTGCGCGCCGAGGAGCAGTCTGGGAGAAATATACAAGCAGCATCTGGATTTGATTTAATTCATACGCGCTGTTGTGCAGTACTGTAGCCTGCAAACAATCATATAAATTGCTTATATATTTGTTGTGTGTTTGCAAACGAGGGATTTAATTCAGTTATAAATGCGTAGTGCTGCTGATGCTGAATATCTGAAAGCATTTGACAAAAAGGATCTCATCTGCACGCGGATGTTGACCAAAGAAGACATTGGAGTGTTCCGGAGGCAACACAACACCGACGAGAACGAAGGATGTCTAGACTAGTTATATTCTTTtgaatggacatttttgggaATACCTGCATGTTTGGATAGCTCACTGTCAGGTGACATAGATAGACAGGGGTTCTTCTTTATCTGTTGTTTTAATAAAAGTGAAGCAGCGATGGATGAAGGTGCAGAGTCCGATGATGCTGTCATTATTGTGGAGAACGAAGCAGAGAGCATGCCAGTTCAGGAGAACACGAACGCCTGCAACGAGCGGACAGGCACCTTGAATTTTCTGGACACTTGTCCCGTGTGTCATTTAAACTTTCACAGTCGAGAACCAAAACTTCTGCCATGTCTCCACtctttttgtaagaagtgtttgCCGTCGGCTTCCAGGAATTTGGCCATGCCAGACACTAACAGCTCGACGAAACCACTGAATGTGATTCGCTGTCCGGTGTGCAGACAGGAGTGTATGGAGGTGGACGTGATGGAGAACTTCTTTGTGAGGGACTCAGTGGAGGCTTCCAGCAGCACCGTGGAGAGGACTGTTCAGCTATGTATGAGTTGTGAGGACAACACAGAGACTACAGGTTTCTGTGTGGACTGTGTGGAGTTCATGTGTGCCACCTGCGTGGAGGCCCACCAGAGGGTCAAGTTCACCAAAGACCACACCATCAGACAGAAGGGGGATGTATCTCAAGAGTATGTGGGTGTTTCCACTCATAGGCCAGTGTTCTGTGAAGTCCACAAGCAGGAGCCCCTGAAGCTGTTCTGTGAAACCTGTGATCTACCAACCTGTCGAGACTGTCAGCTACTCAAGCACAAGGACCACAATTACCAGTTTCTGGAGGATGCCTATAAGAATCACAAACATTATATGGAGGATATGAATCGTCAACTGCTGGAAAAAAAGAAGATAATTGAAGATGTGTCAAACTCCATAAACAATGGACTCCTTCAAGTTGATGAGAACCGCATATCAGTTCACAATGAAATCAAGAAGTCCATCTGTAGTCTGATACTAGAGATCAACAGAAAGGGAAAGATTCTTGTCAATCAGCTTGAGGGCCTGACAAAGGATCATGAGAGCGGTCTGAAGAAGCAGAAGGAGGATATTGGCTATCTGTCCAGACACCTGGATCACGTGATCAACTTCACAAAATGGGCGACAGCTAGGAACGGCGGCACAGCTCTCCTGTACTGCAAACGTTTGATTCTGTTTCAGATCGGAAACCTGCTGCGGGCTAAATGCAATACCTCGTTTGTACCGCAGAGCACTGTGCGTTTCCAGTGTCGGTCAGGCTTCTGGGCTTCAAATGTCGATCTGGGCTCATTAGTGGTGGAGAATGTCCCAGGCCCCCAGCTGGGCAGCTTCCAGGGCATCCCTCATCAACTCCCCCATCCTGGGCAGGGCCCCTCAGGCTCCCCCAACAGCCTGCCCCCAGGCCTCTCCCAGGCCCGCCTGGCCCCCCACAACCACAACACCCTGGCTCAGCTCCAGATGCAGGTGGAGAAACTAGCCCAACAGCCTCACTGGCAGCCCCAGACCCCACCCTGGGCCTGGTACCAGAGCATGCGGCTCCAGAGACCCCCTCCAGGGCCCCTCCAGGGTGGCTCTCCCTCCCAGAGTCTCCCCCCCATGCCACAGCAGGGCCGGAGGTTCATTGCCCCCCCTGCAATCCATCTTAGTCCCACCAGCACCCTGCCAAGTCCTGGATATCCTCCCCAGgCTGTCCAATCACTGAGAGGCCTGGTGAGCAGCCCCAGCAGCTATGCACTCAAACACATGGACGTATTCAACCCAATGCCTCACTTCTCCCACAATGCACCACTGTCTAGCAACGGCAGCCTCAGTTCTCCTCACTTGCGACAGCAACAGATGGAGTCTGCATATCACAACAAGCACCCTGGAGGCCCTGTCCAGATAATAAGACCCAACTTCCCTCAGACCCTACCAGCTTCCCTCCCATACAGAACTGCACAAGGACATCATCATGCAGGACTAACTGCTATATCCTGTGAAGAGAAACCAGGGACTGTTTCCTGGAAACCTCTGGAGACACAGCAGAAGGCGTATGGAGCTGGGGGATCAGCTGCCAAGAGGAGACGAAGGGCATCGCCTGGACCCATCATCATCATAAAAGACGAGCCAGAGGACGACATCAGCTGTgtacAGGGTAACCTGAGAGCCAACCTCCCAGACAGTAGCACGGGGGTCCAGGCCCAAACCTGTCGGCAAGATGGAGGGGAACAACAAGTCCAGATTTCTTGTCAGAGCACAGAGGAAAAGGCCCAGGCCCCACCACAGCCTCCAGGGCCTTCAGGGGACCTGAGTCAAGCCCCACAGCAGAGCCACTCTCTGGGGGCAGAGCAGCAGCTAGGCAGTCAGGGCCCAGCTCCAGAAGAGGACCCTAATGAGGATTGGTGTGCTGTGTGTCAGAATGGAGGAGAGCTGCTACTGTGTTGTGACAAGTGTCCCAAAGTCTTCCACCTCTCTTGCCACATCCCCACCCTCTTCAGATTACCCAGtGGGGAGTGGTTCTGCTCATTCTGCCGTGACCTGTCAGTGCCTGAGGTGGTGTATGACTGTGACATCAGCAGATTAGAGCCCAGAACAGTGAAGgaggaaccagactctgagggAGGATTCTGCCCTGTGGACAAACGGaaatGTGAGCGATTGTTGCTGAAGATGTACTGCAGTGAGCTCAGTGCTGACTTCCAGGAGGCTAGATCCCCCTTGATATTGCCAGAGAACCAGGAGACCCAAAAGACGCCGATGGTTCTGTCCATTGTGAAGAGCAAGCTGGAATCCAGGGAGAGCCCCTGCTACCAGACACCTTCTGAGTTTGTATCAGACATCCGACTCATCTTCAGGAACTGTGCAGCATTCAATGAGGCTGACACTGAGGTTGCCACTGCAGGGAGAAACCTGGAGAGGTTCTTTGAGGAGCAGTTGAAGTTACTCTACCCTGAACGGATTTTTCCAAAGGTCAAATCTGAGGTCATCAGTTCTGTGACCCCTcccgtctctcctccccctcccacaACCCCTGATGAGGAGAGTTCCCAGCATGCAAAGCATCAGCGCAGGTGCTCTGAGACCCAGGAGTTGTGTACTCCTGCTCAGCTAAGCTCAccaaagggagaggaagaggccgTATAAGCGTGCACATCGTCATCTCATCAACTTTTATCAGTCAATAACACTGCCAGTACTAGCCTATACTAGTAATTCATCTTATTCTCTGAGAAAGTCTGATTTTCTAAATGTGCCAAAATAACGTTCTGTGATTGAATCATTTTGCACAAAAGAACAGTGAAGCAGGGTACCAAAATCCTTTCCTCCTCCTACTATACCTGCTTAAGACTGGTTTACATTAAGGCTGTACTAATATAGTGTTGCTATGACTAAAGACCCTGAGTATCAAATATGAAAACAGAAGGTGTTTGATTATCCAGCAGCCTGTGTGGATATGGTTCTTGTAACAGAGTATGTGTACCTTCTGGGGAATAGGAACTGTTACAAGGTTAGTAAAGTGAAAACACGTCAAAGGTATCAAACCAGCCTGATAAAACACAAGACTATTTCAGTTGTTATTGGAAGACTGTATGAAGTGTTAGTTTCATGAACATGTCAGCTGTGCGAGGTCTAGTTGTTCAGGCCTACGGTAGCCTTGACTCTAGTTTACAGTGATGGCTGGTAGCATGACACAAGGCCTACTTTATTAATCGCAACAATAGAACTTCCTCTTTGTTCCCTCATTGTTTTGTCATTGAGCCATTCAATGTGTCATGTATTTATATTTTACATTGTTGTAGTGGTTTTTATGCAGTGTATGTAAATATTTACAATGATCATTAACTTAAACCAGGCAAGTAAATCTTCAACAAAATGCAGTCCCAAATAACCTCATTTGCTATGTTTTCTCATGACTTCAAACCATCGCTACTTATGAAAACCAAAATATTGTATTCATAAAAAAGACTTATTGCATGCAAGTTTACTTGCAGCTGTTTACAGGGTAAAATAAACAATGTCCATTATCTTA
>XM_036969158.1
ttgCCGTCGGCTTCCAGGAATTTGGCCATGCCAGACACTAACAGCTCGACGAAACCACGTGAGCTGCTCATGTTTACAAACTATAGATACGCGAGACAGTGCATCCCAATGACTGTATAAGGGGAGGTGCATCCGGTGAATGTGATTCGCTGTCCGGTGTGCAGACAGGAGTGTATGGAGGTGGACGTGATGGAGAACTTCTTTGTGAGGGACTCAGTGGAGGCTTCCAGCAGCACCGTGGAGAGGACTGTTCAGCTATGTATGAGTTGTGAGGACAACACAGAGACTACAGGTTTCTGTGTGGACTGTGTGGAGTTCATGTGTGCCACCTGCGTGGAGGCCCACCAGAGGGTCAAGTTCACCAAAGACCACACCATCAGACAGAAGGGGGATGTATCTCAAGAGTATGTGGGTGTTTCCACTCATAGGCCAGTGTTCTGTGAAGTCCACAAGCAGGAGCCCCTGAAGCTGTTCTGTGAAACCTGTGATCTACCAACCTGTCGAGACTGTCAGCTACTCAAGCACAAGGACCACAATTACCAGTTTCTGGAGGATGCCTATAAGAATCACAAACATTATATGGAGGATATGAATCGTCAACTGCTGGAAAAAAAGAAGATAATTGAAGATGTGTCAAACTCCATAAACAATGGACTCCTTCAAGTTGATGAGAACCGCATATCAGTTCACAATGAAATCAAGAAGTCCATCTGTAGTCTGATACTAGAGATCAACAGAAAGGGAAAGATTCTTGTCAATCAGCTTGAGGGCCTGACAAAGGATCATGAGAGCGGTCTGAAGAAGCAGAAGGAGGATATTGGCTATCTGTCCAGACACCTGGATCACGTGATCAACTTCACAAAATGGGCGACAGCTAGGAACGGCGGCACAGCTCTCCTGTACTGCAAACGTTTGATTCTGTTTCAGATCGGAAACCTGCTGCGGGCTAAATGCAATACCTCGTTTGTACCGCAGAGCACTGTGCGTTTCCAGTGTCGGTCAGGCTTCTGGGCTTCAAATGTCGATCTGGGCTCATTAGTGGTGGAGAATGTCCCAGGCCCCCAGCTGGGCAGCTTCCAGGGCATCCCTCATCAACTCCCCCATCCTGGGCAGGGCCCCTCAGGCTCCCCCAACAGCCTGCCCCCAGGCCTCTCCCAGGCCCGCCTGGCCCCCCACAACCACAACACCCTGGCTCAGCTCCAGATGCAGGTGGAGAAACTAGCCCAACAGCCTCACTGGCAGCCCCAGACCCCACCCTGGGCCTGGTACCAGAGCATGCGGCTCCAGAGACCCCCTCCAGGGCCCCTCCAGGGTGGCTCTCCCTCCCAGAGTCTCCCCCCCATGCCACAGCAGGGCCGGAGGTTCATTGCCCCCCCTGCAATCCATCTTAGTCCCACCAGCACCCTGCCAAGTCCTGGATATCCTCCCCAGgCTGTCCAATCACTGAGAGGCCTGGTGAGCAGCCCCAGCAGCTATGCACTCAAACACATGGACGTATTCAACCCAATGCCTCACTTCTCCCACAATGCACCACTGTCTAGCAACGGCAGCCTCAGTTCTCCTCACTTGCGACAGCAACAGATGGAGTCTGCATATCACAACAAGCACCCTGGAGGCCCTGTCCAGATAATAAGACCCAACTTCCCTCAGACCCTACCAGCTTCCCTCCCATACAGAACTGCACAAGGACATCATCATGCAGGACTAACTGCTATATCCTGTGAAGAGAAACCAGGGACTGTTTCCTGGAAACCTCTGGAGACACAGCAGAAGGCGTATGGAGCTGGGGGATCAGCTGCCAAGAGGAGACGAAGGGCATCGCCTGGACCCATCATCATCATAAAAGACGAGCCAGAGGACGACATCAGCTGTgtacAGGGTAACCTGAGAGCCAACCTCCCAGACAGTAGCACGGGGGTCCAGGCCCAAACCTGTCGGCAAGATGGAGGGGAACAACAAGTCCAGATTTCTTGTCAGAGCACAGAGGAAAAGGCCCAGGCCCCACCACAGCCTCCAGGGCCTTCAGGGGACCTGAGTCAAGCCCCACAGCAGAGCCACTCTCTGGGGGCAGAGCAGCAGCTAGGCAGTCAGGGCCCAGCTCCAGAAGAGGACCCTAATGAGGATTGGTGTGCTGTGTGTCAGAATGGAGGAGAGCTGCTACTGTGTTGTGACAAGTGTCCCAAAGTCTTCCACCTCTCTTGCCACATCCCCACCCTCTTCAGATTACCCAGtGGGGAGTGGTTCTGCTCATTCTGCCGTGACCTGTCAGTGCCTGAGGTGGTGTATGACTGTGACATCAGCAGATTAGAGCCCAGAACAGTGAAGgaggaaccagactctgagggAGGATTCTGCCCTGTGGACAAACGGaaatGTGAGCGATTGTTGCTGAAGATGTACTGCAGTGAGCTCAGTGCTGACTTCCAGGAGGCTAGATCCCCCTTGATATTGCCAGAGAACCAGGAGACCCAAAAGACGCCGATGGTTCTGTCCATTGTGAAGAGCAAGCTGGAATCCAGGGAGAGCCCCTGCTACCAGACACCTTCTGAGTTTGTATCAGACATCCGACTCATCTTCAGGAACTGTGCAGCATTCAATGAGGCTGACACTGAGGTTGCCACTGCAGGGAGAAACCTGGAGAGGTTCTTTGAGGAGCAGTTGAAGTTACTCTACCCTGAACGGATTTTTCCAAAGGTCAAATCTGAGGTCATCAGTTCTGTGACCCCTcccgtctctcctccccctcccacaACCCCTGATGAGGAGAGTTCCCAGCATGCAAAGCATCAGCGCAGGTGCTCTGAGACCCAGGAGTTGTGTACTCCTGCTCAGCTAAGCTCAccaaagggagaggaagaggccgTATAAGCGTGCACATCGTCATCTCATCAACTTTTATCAGTCAATAACACTGCCAGTACTAGCCTATACTAGTAATTCATCTTATTCTCTGAGAAAGTCTGATTTTCTAAATGTGCCAAAATAACGTTCTGTGATTGAATCATTTTGCACAAAAGAACAGTGAAGCAGGGTACCAAAATCCTTTCCTCCTCCTACTATACCTGCTTAAGACTGGTTTACATTAAGGCTGTACTAATATAGTGTTGCTATGACTAAAGACCCTGAGTATCAAATATGAAAACAGAAGGTGTTTGATTATCCAGCAGCCTGTGTGGATATGGTTCTTGTAACAGAGTATGTGTACCTTCTGGGGAATAGGAACTGTTACAAGGTTAGTAAAGTGAAAACACGTCAAAGGTATCAAACCAGCCTGATAAAACACAAGACTATTTCAGTTGTTATTGGAAGACTGTATGAAGTGTTAGTTTCATGAACATGTCAGCTGTGCGAGGTCTAGTTGTTCAGGCCTACGGTAGCCTTGACTCTAGTTTACAGTGATGGCTGGTAGCATGACACAAGGCCTACTTTATTAATCGCAACAATAGAACTTCCTCTTTGTTCCCTCATTGTTTTGTCATTGAGCCATTCAATGTGTCATGTATTTATATTTTACATTGTTGTAGTGGTTTTTATGCAGTGTATGTAAATATTTACAATGATCATTAACTTAAACCAGGCAAGTAAATCTTCAACAAAATGCAGTCCCAAATAACCTCATTTGCTATGTTTTCTCATGACTTCAAACCATCGCTACTTATGAAAACCAAAATATTGTATTCATAAAAAAGACTTATTGCATGCAAGTTTACTTGCAGCTGTTTACAGGGTAAAATAAACAATGTCCATTATCTTA

Function

NR:

description
PREDICTED: transcription intermediary factor 1-alpha-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036969157.1 False 4473 mRNA 0.49 18 14370026 14381434
XM_036969158.1 True 3754 mRNA 0.50 18 14370823 14381434

Neighbor

gene id symbol gene type direction distance location
LOC110521387 LOC106584502 coding upstream 139923 14191124 ~ 14230103 (+)
LOC110521386 LOC106584503 coding upstream 205207 14155509 ~ 14164819 (+)
fnbp4 LOC106584504 coding upstream 338926 14011108 ~ 14031100 (+)
lrrc10 LOC106584482 coding upstream 361915 14005458 ~ 14008111 (+)
washc4 kiaa1033 coding upstream 388217 13956515 ~ 13981809 (+)
LOC110521391 LOC106584496 coding downstream 1973 14383407 ~ 14427519 (+)
LOC118945780 NA coding downstream 379694 14761128 ~ 14772721 (+)
LOC110521393 LOC106584489 coding downstream 399476 14780910 ~ 14848042 (+)
LOC110521396 yars2 coding downstream 473915 14855349 ~ 14862158 (+)
cdkn1bb LOC106584490 coding downstream 480729 14862163 ~ 14868180 (+)
G2203462 LOC100194703 non-coding upstream 3176 14366542 ~ 14366850 (+)
G2203461 NA non-coding upstream 4916 14364569 ~ 14365110 (+)
G2203310 NA non-coding upstream 10343 14357577 ~ 14359683 (+)
G2203280 NA non-coding upstream 59278 14309528 ~ 14310748 (+)
G2203250 NA non-coding upstream 104807 14261921 ~ 14265219 (+)
G2203531 NA non-coding downstream 86414 14467848 ~ 14475788 (+)
G2203532 NA non-coding downstream 91265 14472699 ~ 14479096 (+)
G2203609 LOC106582599 non-coding downstream 102877 14484311 ~ 14484515 (+)
G2203610 LOC100136012 non-coding downstream 104005 14485439 ~ 14485829 (+)
G2203611 NA non-coding downstream 104706 14486140 ~ 14486459 (+)
tnnt3a LOC100136357 other upstream 907839 13435735 ~ 13462187 (+)
LOC110521355 LOC106584515 other upstream 1074866 13292190 ~ 13301806 (+)
G2202196 NA other upstream 1168535 13201138 ~ 13201491 (+)
LOC110521323 LOC106561036 other upstream 2573091 11683849 ~ 11796935 (+)
G2198837 NA other upstream 3225354 11144213 ~ 11144672 (+)
G2203653 NA other downstream 178013 14559447 ~ 14567103 (+)
G2203973 NA other downstream 890611 15272045 ~ 15273733 (+)
G2205546 NA other downstream 1848737 16230171 ~ 16232396 (+)
G2206179 NA other downstream 2782203 17163637 ~ 17164159 (+)
G2206268 LOC106584433 other downstream 2793983 17175417 ~ 17175872 (+)

Expression


Co-expression Network