LOC118945780


Basic Information

Item Value
gene id LOC118945780
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 14761128 ~ 14772721 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040879.1
cacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatacacaaacactcaTATGCAGCGAGTCGGTGGGAAATGCTAACAGCTACTATAGTTGGTCTGAAATGTTTAAGCACAGGGTTAACTCAGACTGTGTTAGTATGTATCCATTGAGgctggtgtggtggtgtgggggttggTGTTAGTCTTGGGGTTGTTGTCGGCATTAGTGTTGGTATTAGTGGTGTTGTTGTGGTTCCTGTGATTTGTGATTGTGTTGGTGCTCGTGCGGATGCAGGTTATTGTGTTGGTGTTGACTGGTCATGCGGCACAGAAAGTTGTCGTGTGTTCAGTGTTcagcagagggagcagagagCGTGTGGTGTGGTACTTGCTTCACTAATGAATTTCCTTAGCCAGGTGAGACCATGGGGAGACTATGGGGCGAGCTTATTAGTCAACAGACTACAGAGACGGGAGGCCCTGGAACCaggctgatctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcgctgtctctctctctctctctctctctgtctgtctcttaggCCGATGGCACAGGACTTTTAGCCAAGCAGAGAACCCCATGGTCAGACAGATGGCCCTAGCAACAGAGCTACCTGACAAGCCGCTGTGagcatgatggagggaggaggaggagggaggaggcggTAGGCCAGtgtattcccctctctctctctctctctgttcattagGGAGCAGGTGAGAAACATTAACAGCAGCAGCTGCACTGCTCCGCACACATGGTTGAGGGCTTGAGCTAGTCCACCCCACTTTCTGTCTGTCCACCAGTGGAAACTCACTCCTTTCTGGGAAATGCCTAGTGTACACCAGTTACCAGGAATGCATTTAGTAAAGGTTTCCGGGACACACATTAAGCCCTGTCCTGTACTAAATAGCTCTTTAAATGGAGATGCTCTATTAAATATGCTTTTTACTTCTGGAAAACTGTCCCATTGACACTTCAGACAATCCCAGTATCTCTGTGTCAGACTGGTTAGAGGTGAATGAATCTGTGATTATGTGTTTATGTTTAATTCTTTCTAAACAAAAGAAAGAAAGTTCCACACTCTGCTCCCAAATATGTAACGAGTAAACCATAACCAACGTTGCAGCACGCGGAGTTACAACATTAATGCTTGAACCAGGTTGCTTTTCACTATGTGTCACACCTAACCATTTTTCTGTGTTTACTGAGGTGTTGTTGAAGCTGTCTTCCTGACTTAGCTGACTGGGACCatggtactggaggaccagagtagACTGACGGGTCTATCACTGTGCTTTGGGGTGAGGTAGTAGGTTGTATAGTTTTAGGGTCATTCCCTTCCTGTCAGATAACTATACAACTTACTGTCTTTCCTGAGGTGGCTGTAATATCATCCTTCATCTCTGCAGCGCGCCCGCCACCCGGACCTCGATAGGAATACGTATTATGTACTAATTCAAGTGTATAACATGTTTGTAATGTCATTTATATTGTATCTATGCATCATTTGGTTCTGTTCTGGCTCTTTGCATACTATATGTATTATTTTGCCGTGAAACTGCTCTGCCTCTATGATGTTCGCACGGGGTGAGGTAGTAGGTTGTGTGGTTTCAGGGTAGTGATTTTGCCCCATCAGGAGATAACTATACAATTTACTGCCTTCCCTGAAGGGCAGCAAGACTTCACCAGACAACAGCAGAGGCCGCCGTTGGCACCACATGATAATCTAGCATCAAAAATAGGTATGCATTTAGGTATCTAGGTATAAAATAGTTATCTATCTGTTAATCAGCTCCAGAGGACACAGGAGCATTTCAGGTACTAGTCAGGTACAAGTCTACTGACAACCTATGATTACCATGTAGCTAACATGTTATTGGATAACTTTGAAATTGTAAGTTTTCAAATGAGtaataaaaataattattttataAATGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040879.1 True 2024 mRNA 0.45 2 14761128 14772721

Neighbor

gene id symbol gene type direction distance location
LOC110521391 LOC106584496 coding upstream 333609 14383407 ~ 14427519 (+)
LOC110521390 LOC106584497 coding upstream 379694 14370026 ~ 14381434 (+)
LOC110521387 LOC106584502 coding upstream 531025 14191124 ~ 14230103 (+)
LOC110521386 LOC106584503 coding upstream 596309 14155509 ~ 14164819 (+)
fnbp4 LOC106584504 coding upstream 730028 14011108 ~ 14031100 (+)
LOC110521393 LOC106584489 coding downstream 8189 14780910 ~ 14848042 (+)
LOC110521396 yars2 coding downstream 82628 14855349 ~ 14862158 (+)
cdkn1bb LOC106584490 coding downstream 89442 14862163 ~ 14868180 (+)
LOC110521404 LOC106560988 coding downstream 393556 15166277 ~ 15181233 (+)
LOC118945892 NA coding downstream 412443 15185164 ~ 15185354 (+)
G2203700 NA non-coding upstream 18832 14740466 ~ 14742296 (+)
G2203720 NA non-coding upstream 25577 14734533 ~ 14735551 (+)
G2203708 NA non-coding upstream 41923 14696522 ~ 14719205 (+)
G2203746 NA non-coding upstream 72555 14688369 ~ 14688573 (+)
G2203743 NA non-coding upstream 75402 14685350 ~ 14685726 (+)
G2203716 NA non-coding downstream 15650 14788371 ~ 14791060 (+)
G2203713 NA non-coding downstream 70944 14843665 ~ 14844283 (+)
G2203758 NA non-coding downstream 71616 14844337 ~ 14844545 (+)
G2203695 NA non-coding downstream 75580 14848301 ~ 14850812 (+)
G2203653 NA other upstream 194025 14559447 ~ 14567103 (+)
tnnt3a LOC100136357 other upstream 1298941 13435735 ~ 13462187 (+)
LOC110521355 LOC106584515 other upstream 1465968 13292190 ~ 13301806 (+)
G2202196 NA other upstream 1559637 13201138 ~ 13201491 (+)
LOC110521323 LOC106561036 other upstream 2964193 11683849 ~ 11796935 (+)
G2203973 NA other downstream 499324 15272045 ~ 15273733 (+)
G2205546 NA other downstream 1457450 16230171 ~ 16232396 (+)
G2206179 NA other downstream 2390916 17163637 ~ 17164159 (+)
G2206268 LOC106584433 other downstream 2402696 17175417 ~ 17175872 (+)
G2206271 NA other downstream 2406680 17179401 ~ 17179695 (+)

Expression


Co-expression Network