LOC110521393 (LOC106584489)


Basic Information

Item Value
gene id LOC110521393
gene name LOC106584489
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 14780910 ~ 14848042 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598925.2
GGTTTTGACAGCAGCAGAGTTGTTTAGGAGACAAACAAGGACGTGTTGAAGGGGACAATTCTTTCCCTCCTTGTTCCACTCGAACTCGCACTGACAGCTTCTCAACGCACGGAGGTTTCTGACGGGATGTCGGTTTCCGATCGGGCTGTCCGTTGTAAGtctGATGAATGATCCTCCCCCTAGTCCCGTCCTCCGTCATGGTCGACATGGAGAGCCACTGCCGGCCTCCGTCCCCCCTAGAGGATTCGGTGCTGGGCAGCCCGCTGTGTGGGGACTTCATCGGGGGCATGGAGGAGCTGCAGGACATCTCCCAATCCATCGACGGTGATGCCCACAGCTCCTTTGACGTCCCTGAGTACCAGTCCCAGTCGAGTAACTGCTCTGGCTCTGAAGGATCCACCATTCTAGaTGCGCTGACCCCAGCCTCCAGCCCATCGTCGGGAGTGTATGGGGCGGTTGCAGGGCAGGAAGagttctcctctacctctctcaacCTGGAGTGTCGGGTGTGTGCCGACCGCGCCTCCGGATACCACTATGGAGTTCACGCCTGTGAGGGCTGCAAGGGTTTCTTTCGGCGGACCATCCGCCTCAAGCTGGAATATGACAAGTGTGAACGCCGATGTAAGATCCTGAAGAAGAACCGGAACAAATGCCAATACTGCCGCTTCCAGAAGTGCCTGTCTGTGGGCATGTCCCACAATGCGATCCGTTTTGGTCGGATGCCCCAGTCAGAGAAGCTGAAGCTGAAGGCAGAGATCCAGACGGGGGACAGGGAGGTGGAGGACCCCGAGCAAGCTGACCAGAAGACCCTGGCCAGGCACATCTATGAGGCCTACCTCAAAAACTTCAACATGAACAAGGCCAAAGCCCGCACCATCCTCACCGGAAAGACCAGCACTCCACCATTTGTCATCCACGACATGGATACCCTCCAGCTGGCAGAGCAGACCCTCGTTGCCAAGATGGTGGGCACGGCTGGGGGCCATCTGCTGGAGAAGGAGGCTGAGGTCCGCATCTTCCACTGCTGCCAGTGCACCTCTGTGGAGACGGTCACAGAGCTGACTGAGTTCGCCAAGTCTGTCCCCGGCTTCTCCAGCCTGGACCTGAACGACCAGGTGACTCTGCTGAAGTATGGAGTGTACGAGGCGCTGTTCGCCCTGCTGGCCTCATGTATGAACAAGGACGGCCTCCTGGTGGCCTACGGATCGGGATTCATCACCAGGGAGTTTCTCAAGAGTCTGAGGAGGCCCTTCAGCGACATGATGGAACCCAAGTTCCAGTTCGCCATGAAGTTCAACGGGCTGGAGCTGGATGACAGTGACCTGGCCCTGTTTGTGGCCGCCATCATCTGCTgtggagaCCGTCCCGGCCTGGTGAACGTTGGCCACATTGAGCGCATGCAGGAGAACATTGTTCAGGTGCTGCGGCTCCACCTGCTGGCCAACCACCCAGACGACACCTTCCTCTTCCCCAAGCTGCTGCAGAAACTGTCCGACCTCCGGCAGCTGGTCACCGAGCACGCTCAGTTGGTCCAGGAGATCAAGAAAACAGAGGACATGTCACTCCACCCCTTGCTGCAGGAGATCTACAGAGACATGTACTGAGACACTGAGCccagagaggagggtgggggctGGGTCACacaccctcctcaccctccatCTTGGGGACATGTACTGAGTCTAGAAAGGAGGTTGCCCTCCATTTTGGGGACACATGCGTGAACAGTCTCTCTGAATAGTCCCACCATGAAAGGATTGGACCACTGGACCCCCAGATGCAGGGTTGCTCATCTTTCAGACAGGACCGGTCAGGACAATAGGACTATATTCTGGGCACCTGTAGTGGGGTCCACTACTCCCACAGGGACCTATAGGGTCATATTACCTGTGTGGATGGGCAATGTGAAGCTGAACTGAGTGTCCTGTTCCGGTGTTTGTCCTAACTAGAGAACATGTATTGGGCTGGGTTTAGACACCTTTGGCCAACGTCAGAAATAAGTACACGGATCAAATAATCAATTGCTTGTTTAGATAACAGtggctgtgtttagacaggcagcccaattctgatatttttttcactaattggtcttttgaccaatcagatcagctctgaaaaagatctgatatgaaaagatctgatgtgactggtcaaaagaccaattagtgggaaaaagatcagaattgggctgcctgtctaaatgcagcaCATGATTAAGTCAGACTATTGCCACAAGAGTCCCTGCTAGAGGGCATCTCTTTCCTATACGGTACACACATCTCTGACCTAATCAGGCCCTTGAGTGTTGAACAGCAGGACGTATCGACAGAATCACCACTCCAGCAGTATCTTTATAACTATGTCATTTTGTAACTAACTTCAGAGTGAGAGAAAAGAATGATAATGTTGCACACCTATTTTGCAGTAAAGACACCCAAGCGACTTCAATGCCGAATACAGACTTCAGATGTGAGTGACTGTGTCTCCCTGTAAGGCAGCTTTTTAGCGATTGGATGTTCTCCCCCAGTGAGGTTATGGGATTGCATGGTCAATAAGGTCCTCATGaggttctgtctctctcactgccggtgtgtgtgtctctcctataTTCAGTTTCCTAACACTGTACCAGGTTACTGTCCCTCAGATGTGGCTGCAGAGGCTCAAAATCCAACTCACAGTACAAGTAAATATAA
>XM_036968538.1
GGTTTTGACAGCAGCAGAGTTGTTTAGGAGACAAACAAGGACGTGTTGAAGGGGACAATTCTTTCCCTCCTTGTTCCACTCGAACTCGCACTGACAGCTTCTCAACGCACGGAGGTTTCTGACGGGATGTCGGTTTCCGATCGGGCTGTCCGTTtctGATGAATGATCCTCCCCCTAGTCCCGTCCTCCGTCATGGTCGACATGGAGAGCCACTGCCGGCCTCCGTCCCCCCTAGAGGATTCGGTGCTGGGCAGCCCGCTGTGTGGGGACTTCATCGGGGGCATGGAGGAGCTGCAGGACATCTCCCAATCCATCGACGGTGATGCCCACAGCTCCTTTGACGTCCCTGAGTACCAGTCCCAGTCGAGTAACTGCTCTGGCTCTGAAGGATCCACCATTCTAGaTGCGCTGACCCCAGCCTCCAGCCCATCGTCGGGAGTGTATGGGGCGGTTGCAGGGCAGGAAGagttctcctctacctctctcaacCTGGAGTGTCGGGTGTGTGCCGACCGCGCCTCCGGATACCACTATGGAGTTCACGCCTGTGAGGGCTGCAAGGGTTTCTTTCGGCGGACCATCCGCCTCAAGCTGGAATATGACAAGTGTGAACGCCGATGTAAGATCCTGAAGAAGAACCGGAACAAATGCCAATACTGCCGCTTCCAGAAGTGCCTGTCTGTGGGCATGTCCCACAATGCGATCCGTTTTGGTCGGATGCCCCAGTCAGAGAAGCTGAAGCTGAAGGCAGAGATCCAGACGGGGGACAGGGAGGTGGAGGACCCCGAGCAAGCTGACCAGAAGACCCTGGCCAGGCACATCTATGAGGCCTACCTCAAAAACTTCAACATGAACAAGGCCAAAGCCCGCACCATCCTCACCGGAAAGACCAGCACTCCACCATTTGTCATCCACGACATGGATACCCTCCAGCTGGCAGAGCAGACCCTCGTTGCCAAGATGGTGGGCACGGCTGGGGGCCATCTGCTGGAGAAGGAGGCTGAGGTCCGCATCTTCCACTGCTGCCAGTGCACCTCTGTGGAGACGGTCACAGAGCTGACTGAGTTCGCCAAGTCTGTCCCCGGCTTCTCCAGCCTGGACCTGAACGACCAGGTGACTCTGCTGAAGTATGGAGTGTACGAGGCGCTGTTCGCCCTGCTGGCCTCATGTATGAACAAGGACGGCCTCCTGGTGGCCTACGGATCGGGATTCATCACCAGGGAGTTTCTCAAGAGTCTGAGGAGGCCCTTCAGCGACATGATGGAACCCAAGTTCCAGTTCGCCATGAAGTTCAACGGGCTGGAGCTGGATGACAGTGACCTGGCCCTGTTTGTGGCCGCCATCATCTGCTgtggagaCCGTCCCGGCCTGGTGAACGTTGGCCACATTGAGCGCATGCAGGAGAACATTGTTCAGGTGCTGCGGCTCCACCTGCTGGCCAACCACCCAGACGACACCTTCCTCTTCCCCAAGCTGCTGCAGAAACTGTCCGACCTCCGGCAGCTGGTCACCGAGCACGCTCAGTTGGTCCAGGAGATCAAGAAAACAGAGGACATGTCACTCCACCCCTTGCTGCAGGAGATCTACAGAGACATGTACTGAGACACTGAGCccagagaggagggtgggggctGGGTCACacaccctcctcaccctccatCTTGGGGACATGTACTGAGTCTAGAAAGGAGGTTGCCCTCCATTTTGGGGACACATGCGTGAACAGTCTCTCTGAATAGTCCCACCATGAAAGGATTGGACCACTGGACCCCCAGATGCAGGGTTGCTCATCTTTCAGACAGGACCGGTCAGGACAATAGGACTATATTCTGGGCACCTGTAGTGGGGTCCACTACTCCCACAGGGACCTATAGGGTCATATTACCTGTGTGGATGGGCAATGTGAAGCTGAACTGAGTGTCCTGTTCCGGTGTTTGTCCTAACTAGAGAACATGTATTGGGCTGGGTTTAGACACCTTTGGCCAACGTCAGAAATAAGTACACGGATCAAATAATCAATTGCTTGTTTAGATAACAGtggctgtgtttagacaggcagcccaattctgatatttttttcactaattggtcttttgaccaatcagatcagctctgaaaaagatctgatatgaaaagatctgatgtgactggtcaaaagaccaattagtgggaaaaagatcagaattgggctgcctgtctaaatgcagcaCATGATTAAGTCAGACTATTGCCACAAGAGTCCCTGCTAGAGGGCATCTCTTTCCTATACGGTACACACATCTCTGACCTAATCAGGCCCTTGAGTGTTGAACAGCAGGACGTATCGACAGAATCACCACTCCAGCAGTATCTTTATAACTATGTCATTTTGTAACTAACTTCAGAGTGAGAGAAAAGAATGATAATGTTGCACACCTATTTTGCAGTAAAGACACCCAAGCGACTTCAATGCCGAATACAGACTTCAGATGTGAGTGACTGTGTCTCCCTGTAAGGCAGCTTTTTAGCGATTGGATGTTCTCCCCCAGTGAGGTTATGGGATTGCATGGTCAATAAGGTCCTCATGaggttctgtctctctcactgccggtgtgtgtgtctctcctataTTCAGTTTCCTAACACTGTACCAGGTTACTGTCCCTCAGATGTGGCTGCAGAGGCTCAAAATCCAACTCACAGTACAAGTAAATATAA
>XM_036968539.1
tgagacatgAGACTGTGAAAGAGACAAGAggcacagacagaaacagagacagagactgagacatgAGACTGTGAAAGAGACATGAGGCAGAGACGGAAACATGAGGCAGAGACGGAAACATGAGGCAGAGACAGGCCTGGCAGGAGGTCGTTGTGTCTGACAAGCATTCTGCCCTCACGTCACCCTTGAGGGGTGTATGTGCGTACTTGCGTGCATGTGGCGTGTCCTTGCAAGCGTTAATGCATGTCGTGTGTAGGGACACATTAAAGAGATCTTTCACAAGAATTATGAAATCAACATCTTGGGATGGGGCTGGCTAAATGTTCTTCTTAAGCAATTCACTACCCCCCCTCCCAATCCCAGTCCAAGCCCTAAACCACTCAGGACAGTACGTCTAAAGCTGCCCATAACCAGACACTGCTGTTTGTCAGAGTTGTGTAACACTAGTGAAATCCCATTTGGAACGTGATAAGCATGTATGTCCAGGCTGATAGTGTCATGCTCCAGTCATTGGGTCCATTCTCTGTATTTCACTTTTTCTGCAGAGAAAGTGTCTGTTGGCTGATTGGAGGAAAATGGGGTTTCCTAGTGGCATGTTGTAGGTCAGGATACTGCCGTTGCTTTGCTGATAGTTCACTTAGGTTGAGAGAGTCTCAGATGAATAAAGTTTGCGCCGAGGTTGAGAGATATAAAGATACCAGGGTTTCTTTCGGCGGACCATCCGCCTCAAGCTGGAATATGACAAGTGTGAACGCCGATGTAAGATCCTGAAGAAGAACCGGAACAAATGCCAATACTGCCGCTTCCAGAAGTGCCTGTCTGTGGGCATGTCCCACAATGCGATCCGTTTTGGTCGGATGCCCCAGTCAGAGAAGCTGAAGCTGAAGGCAGAGATCCAGACGGGGGACAGGGAGGTGGAGGACCCCGAGCAAGCTGACCAGAAGACCCTGGCCAGGCACATCTATGAGGCCTACCTCAAAAACTTCAACATGAACAAGGCCAAAGCCCGCACCATCCTCACCGGAAAGACCAGCACTCCACCATTTGTCATCCACGACATGGATACCCTCCAGCTGGCAGAGCAGACCCTCGTTGCCAAGATGGTGGGCACGGCTGGGGGCCATCTGCTGGAGAAGGAGGCTGAGGTCCGCATCTTCCACTGCTGCCAGTGCACCTCTGTGGAGACGGTCACAGAGCTGACTGAGTTCGCCAAGTCTGTCCCCGGCTTCTCCAGCCTGGACCTGAACGACCAGGTGACTCTGCTGAAGTATGGAGTGTACGAGGCGCTGTTCGCCCTGCTGGCCTCATGTATGAACAAGGACGGCCTCCTGGTGGCCTACGGATCGGGATTCATCACCAGGGAGTTTCTCAAGAGTCTGAGGAGGCCCTTCAGCGACATGATGGAACCCAAGTTCCAGTTCGCCATGAAGTTCAACGGGCTGGAGCTGGATGACAGTGACCTGGCCCTGTTTGTGGCCGCCATCATCTGCTgtggagaCCGTCCCGGCCTGGTGAACGTTGGCCACATTGAGCGCATGCAGGAGAACATTGTTCAGGTGCTGCGGCTCCACCTGCTGGCCAACCACCCAGACGACACCTTCCTCTTCCCCAAGCTGCTGCAGAAACTGTCCGACCTCCGGCAGCTGGTCACCGAGCACGCTCAGTTGGTCCAGGAGATCAAGAAAACAGAGGACATGTCACTCCACCCCTTGCTGCAGGAGATCTACAGAGACATGTACTGAGACACTGAGCccagagaggagggtgggggctGGGTCACacaccctcctcaccctccatCTTGGGGACATGTACTGAGTCTAGAAAGGAGGTTGCCCTCCATTTTGGGGACACATGCGTGAACAGTCTCTCTGAATAGTCCCACCATGAAAGGATTGGACCACTGGACCCCCAGATGCAGGGTTGCTCATCTTTCAGACAGGACCGGTCAGGACAATAGGACTATATTCTGGGCACCTGTAGTGGGGTCCACTACTCCCACAGGGACCTATAGGGTCATATTACCTGTGTGGATGGGCAATGTGAAGCTGAACTGAGTGTCCTGTTCCGGTGTTTGTCCTAACTAGAGAACATGTATTGGGCTGGGTTTAGACACCTTTGGCCAACGTCAGAAATAAGTACACGGATCAAATAATCAATTGCTTGTTTAGATAACAGtggctgtgtttagacaggcagcccaattctgatatttttttcactaattggtcttttgaccaatcagatcagctctgaaaaagatctgatatgaaaagatctgatgtgactggtcaaaagaccaattagtgggaaaaagatcagaattgggctgcctgtctaaatgcagcaCATGATTAAGTCAGACTATTGCCACAAGAGTCCCTGCTAGAGGGCATCTCTTTCCTATACGGTACACACATCTCTGACCTAATCAGGCCCTTGAGTGTTGAACAGCAGGACGTATCGACAGAATCACCACTCCAGCAGTATCTTTATAACTATGTCATTTTGTAACTAACTTCAGAGTGAGAGAAAAGAATGATAATGTTGCACACCTATTTTGCAGTAAAGACACCCAAGCGACTTCAATGCCGAATACAGACTTCAGATGTGAGTGACTGTGTCTCCCTGTAAGGCAGCTTTTTAGCGATTGGATGTTCTCCCCCAGTGAGGTTATGGGATTGCATGGTCAATAAGGTCCTCATGaggttctgtctctctcactgccggtgtgtgtgtctctcctataTTCAGTTTCCTAACACTGTACCAGGTTACTGTCCCTCAGATGTGGCTGCAGAGGCTCAAAATCCAACTCACAGTACAAGTAAATATAA
>TU2521341
gatcagaattgggctgcctgtctaaatgcagcaCATGATTAAGTCAGACTATTGCCACAAGAGTCCCTGCTAGAGGGCATCTCTTTCCTATACGGTACACACATCTCTGACCTAATCAGGCCCTTGAGTGTTGAACAGCAGGACGTATCGACAGAATCACCACTCCAGCAGTATCTTTATAACTATGTCATTTTGTAACTAACTTCAGAGTGAGAGAAAAGAATGATAATGTTGCACACCTATTTTGCAGTAAAGACACCCAAGCGACTTCAATGCCGAATACAGACTTCAGATGTGAGTGACTGTGTCTCCCTGTAAGGCAGCTTTTTAGCGATTGGATGTTCTCCCCCAGTGAGGTTATGGGATTGCATGGTCAATAAGGTCCTCATGaggttctgtctctctcactgccggtgtgtgtgtctctcctataTTCAGTTTCCTAACACTGTACCAGGTTACTGTCCCTCAGATGTGGCTGCAGAGGCTCAAAATCCAACTCACAGTACAAGTAAATATAACATATTGCTTAATTCATTTGGGGAAACCTCTCCTGTCTGTTTCTAAGCTCTTGCTCCTGCTTAGGCTATAACTTATCATATCTAAGAAATTTGGATTCCTCTGGGGGAAAAAATTATTTTAGCTATAATTGTTAATTTGCTAATGTTATCATGAATGAGGCTACAGAGTTTCAGAAAGTTCTCCCCATATATCCCACTGAGTTTTTAGTCCTTTGCTCTTTTGGGCAAAGACCCACAGCCTCAGTTGGAGGGACACATTATTGGCTGCCACAGGTCTCCGTTGTTCAAACGTCAGTTACTCATCAGTCATACTTCGACCGAGAATTCACTATGTGCTTTTTAGTGATGGTTTTCACATACCTTGCCCGTCATCTCATTTTCCTCTCCTATCTAGACCAAACTCTAACATGGAGGCTTTGGTGTGCATTATATTCATTTTATAAAACCATGGTGAAGCTCAATGATTTCAAAgatgtttcattttcaatactTTCACAAACAAAAGTAAACAAACTACCATGTCAATAGTGTTCCCCCCACCGTTCAGAACATGGCTGGTGGTTTGATTTCATTCAAAACAGACTGATTTGGAAATGACCAATCAGAGATTCACTGTGTAAATGCACCCACAACGCAACACTAAAGCACAGTGTGCTTACGAGATATGATATGAGACTCTTTCATACACTGTTATATTCGGCACTCCATCTTGTTTTGTATACTGGTATTAAAGGGCTAATATGACTTCAAACTATATTAAAACCTTAACAAAGGCAGATTGAGAGCAGATTTACAGCATTTTAAGCCATTAACTGGacagcctttctctctctctctctctctctctctctctctctc

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598925.2 False 2702 mRNA 0.53 7 14780910 14847184
XM_036968538.1 False 2697 mRNA 0.53 7 14780910 14847184
XM_036968539.1 False 2837 mRNA 0.50 5 14818121 14847184
TU2521341 True 1379 lncRNA 0.41 1 14846664 14848042

Neighbor

gene id symbol gene type direction distance location
LOC118945780 NA coding upstream 8189 14761128 ~ 14772721 (+)
LOC110521391 LOC106584496 coding upstream 353391 14383407 ~ 14427519 (+)
LOC110521390 LOC106584497 coding upstream 399476 14370026 ~ 14381434 (+)
LOC110521387 LOC106584502 coding upstream 550807 14191124 ~ 14230103 (+)
LOC110521386 LOC106584503 coding upstream 616091 14155509 ~ 14164819 (+)
LOC110521396 yars2 coding downstream 8165 14855349 ~ 14862158 (+)
cdkn1bb LOC106584490 coding downstream 14979 14862163 ~ 14868180 (+)
LOC110521404 LOC106560988 coding downstream 319093 15166277 ~ 15181233 (+)
LOC118945892 NA coding downstream 337980 15185164 ~ 15185354 (+)
LOC110521401 LOC106584463 coding downstream 358597 15205781 ~ 15215520 (+)
G2203700 NA non-coding upstream 38614 14740466 ~ 14742296 (+)
G2203720 NA non-coding upstream 45359 14734533 ~ 14735551 (+)
G2203708 NA non-coding upstream 61705 14696522 ~ 14719205 (+)
G2203746 NA non-coding upstream 92337 14688369 ~ 14688573 (+)
G2203743 NA non-coding upstream 95184 14685350 ~ 14685726 (+)
G2203695 NA non-coding downstream 1117 14848301 ~ 14850812 (+)
G2203759 NA non-coding downstream 9951 14857135 ~ 14857340 (+)
G2203762 NA non-coding downstream 22884 14870068 ~ 14870286 (+)
G2203770 NA non-coding downstream 33062 14880246 ~ 14880464 (+)
G2203925 NA non-coding downstream 319469 15166653 ~ 15211610 (+)
G2203653 NA other upstream 213807 14559447 ~ 14567103 (+)
tnnt3a LOC100136357 other upstream 1318723 13435735 ~ 13462187 (+)
LOC110521355 LOC106584515 other upstream 1485750 13292190 ~ 13301806 (+)
G2202196 NA other upstream 1579419 13201138 ~ 13201491 (+)
LOC110521323 LOC106561036 other upstream 2983975 11683849 ~ 11796935 (+)
G2203973 NA other downstream 424861 15272045 ~ 15273733 (+)
G2205546 NA other downstream 1382987 16230171 ~ 16232396 (+)
G2206179 NA other downstream 2316453 17163637 ~ 17164159 (+)
G2206268 LOC106584433 other downstream 2328233 17175417 ~ 17175872 (+)
G2206271 NA other downstream 2332217 17179401 ~ 17179695 (+)
G2203758 NA non-coding upstream 2119 14844337 ~ 14844545 (+)
G2203713 NA non-coding upstream 2381 14843665 ~ 14844283 (+)
G2203716 NA non-coding upstream 55604 14788371 ~ 14791060 (+)

Expression


Co-expression Network