LOC110520947


Basic Information

Item Value
gene id LOC110520947
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 17224312 ~ 17253042 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473058.2
ATGTTATTCTTGCAGTATGTATTACCAAAAATTCCAGACCACATAAGCTGCCTGTCGTCTCACAGCGCGAACCAATGAAAGTGAATTCGTACCAAGCAAAGTGAAGCCCTTACACAAGCTATATTTTTCAAGTCTTTAAAGAGATCACTCGACATAGACAGAATAATCTTTTCATGGCTTCTTGAATGACTCCGTCGCTGATGCATCGCGGTTAATGTATTCTAAAGTATATTTACTTGAATCTGGCTATTGGCAAAAGTTAAGTACCCGTGTTTAGTAATGTCGCATTCATCAGAGGCCTCTGAGCCAGTCAGCGGGATGGAGCACTCTGCAATGCCACAGAGCCCCAGATGCTGGATGGTCTTGGGTGTGAGAAACTCGGAAACTCGCTTGTTTGACGAGCTCTACTTTAACTGCCAACCTAGGCTGTAATCCCTGTGAATATTCCATGAGGGGCGTGTACGTCCAGATGCTCTGTGGAATCAGACATCAGCCAATGTATGGTCAACATTTGTCAATATTGTGTCTTGTGTTGAGCCATAATCAATCCAAGAGATACTACAACAGAGCTATCAAACTAGCTTTggaatactgtaatgtactaatgTACTAGAACATGGACATAAGTTTTCATCACAGCAGGACACATCTTCTTACCTCACTCTCAGATCTGTTAATCAGGCACAAGTCGTGGACAGTAATCCCCTGAACCCTTCAGCCTATCCTATTAGATTAAGAAGTTAAAGCACCCAACCTGACAACCTCCCTCTGCAATGGCTCTACAGGCTGGGGCTAAAGTGTACCACACACTGACCGTGTCAGTCATCTTACTGTAAACACTTTTAACTTCTGACCACCATACATTGAATGGAGAGTTTATTTGGAATATTGAGATATCAGGTTTCTTGACGATGGACAACTCACATATTCCTAAAATGCATGGCACACCTACAATGTCAGAGGCCGAAAGAATATAGCACATTGCTTGACTATTcccaacatttttttaaaccttcAATTGTGCTATTTTGGATTAGACATCATTACTAAAAGTTGAACAACTTGACAATATGTGTTGTATCACATTAAAGTCATTCAAGGAGCTCTACATTGTCTGATAGTTTTCCCATTGTTCATTGATAATTTTACTGTGAACTTCAACCTTACACCTCACAACCACCAAAtagttaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgtgtgcgtgtgcgtgtgcgtgtgtgtgtgcgtgtgcgtgtgcctgtgcgtgtgtgtgcatgtgtgtgtggtggatgCAACCTGTTCAAAGTCTTGTTTCCTGCCAGCATGCGGCAAACATATGCAACAGAATTAAAGCCCTAAAGCTCACAAATTGATGAGGATTTAATGCAGAGTGCAATTCCTGGGAATTAAACAAATTAGTGATCTAATTAGAGATTTGGTCAACAAAAATGAATTAGATGGATTTGTCATTGCTCTAATGAACATAGATGGAAATTGGGTATTGAGATGTTTGTCTCTTGTATTTTAGCCCTTTCCCATTAATAGATTCATTCTATTTTCTTTCTACAATGTAATCTAATCTACATGTCAGATGTATTGCTTtatctgaagaaaaaaaactaatgtgaattgcaatAAACAAGCAGcataattcattaaaaaaaacaactcaAGTATTGTGAATTTAAATGTCAACCTTTGGAAATCACATAGGAATTTCCTATTAATGGAATAACTGATAGCTGATGATTGACTTTTCTTTTTAATCTTGTTGTATTCTCCAGATATGATTTTCTGACCATGCTGCTGCATATTTTAACACGTTTTGCCCTTTGGGAAAGAAATATGGTGCCAGTTCCCTATCCATTTTCAGATCTGTTTAAAGATCATTATTATTGTATACTGTATCATAACTCTTTCACATTTCCAGTTGAGTTTGATTGACTGTTGGGTTTGATTGACTGTTGGGTTTGATTGACTGTTGGGTTTGATTGGACCTGTATACCTTCTACTTGTTGTTGCCTGTGATGACTTTGACAATGACCTTGTCCTCTTGGCCTATCCATGTCCA
>TU2524775
GTAGTGTGAACATGTTATTCTTGCAGTATGTATTACCAAAAATTCCAGACCACATAAGCTGCCTGTCGTCTCACAGCGCGAACCAATGAAAGTGAATTCGTACCAAGCAAAGTGAAGCCCTTACACAAGCTATATTTTTCAAGTCTTTAAAGAGATCACTCGACATAGACAGAATAATCTTTTCATGGCTTCTTGAATGACTCCGTCGCTGATGCATCGCGGTTAATGTATTCTAAAGTATATTTACTTGAATCTGGCTATTGGCAAAAGTTAAGTACCCGTGTTTAGTAATGTCGCATTCATCAGAGGCCTCTGAGCCAGTCAGCGGGATGGAGCACTCTGCAATGCCACAGAGCCCCAGATGCTGGATGGTCTTGGGTGTGAGAAACTCGGAAACTCGCTTGTTTGACGAGCTCTACTTTAACTGCCAACCTAGGCTGTAATCCCTGTGAATATTCCATGAGGGGCGTGTACGTCCAGATGCTCTGTGGAATCAGACATCAGCCAATGTATGGTCAACATTTGTCAATATTGTGTCTTGTGTTGAGCCATAATCAATCCAAGAGATACTACAACAGAGCTATCAAACTAGCTTTggaatactgtaatgtactaatgTACTAGAACATGGACATAAGTTTTCATCACAGCAGGACACATCTTCTTACCTCACTCTCAGATCTGTTAATCAGGCACAAGTCGTGGACAGTAATCCCCTGAACCCTTCAGCCTATCCTATTAGATTAAGAAGTTAAAGCACCCAACCTGACAACCTCCCTCTGCAATGGCTCTACAGGCTGGGGCTAAAGTGTACCACACACTGACCGTGTCAGTCATCTTACTGTAAACACTTTTAACTTCTGACCACCATACATTGAATGGAGAGTTTATTTGGAATATTGAGATATCAGGTTTCTTGACGATGGACAACTCACATATTCCTAAAATGCATGGCACACCTACAATGTCAGAGGCCGAAAGAATATAGCACATTGCTTGACTATTcccaacatttttttaaaccttcAATTGTGCTATTTTGGATTAGACATCATTACTAAAAGTTGAACAACTTGACAATATGTGTTGTATCACATTAAAGTCATTCAAGGAGCTCTACATTGTCTGATAGTTTTCCCATTGTTCATTGATAATTTTACTGTGAACTTCAACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473058.2 False 2098 mRNA 0.39 3 17224312 17253031
TU2524775 True 1174 lncRNA 0.41 3 17225247 17253042
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110521438 LOC106584429 coding downstream 5080 17207651 ~ 17219232 (-)
tmek mp2k2 coding downstream 25806 17188910 ~ 17198506 (-)
LOC110521437 LOC106584433 coding downstream 36915 17168403 ~ 17187397 (-)
LOC110521434 LOC106613772 coding downstream 73097 17122863 ~ 17151215 (-)
LOC110521432 LOC106584436 coding downstream 116798 17093846 ~ 17107514 (-)
atp8b3 LOC106584241 coding upstream 26908 17279939 ~ 17313165 (-)
LOC110521441 LOC106584427 coding upstream 124059 17377090 ~ 17419371 (-)
oaz1a oaz1a coding upstream 211652 17464412 ~ 17474822 (-)
LOC110521444 NA coding upstream 236119 17489150 ~ 17491121 (-)
LOC110521445 LOC106584426 coding upstream 245231 17498262 ~ 17533929 (-)
G2206802 NA non-coding downstream 49890 17173781 ~ 17174422 (-)
G2206801 NA non-coding downstream 56158 17167176 ~ 17168154 (-)
G2206799 NA non-coding downstream 57234 17163751 ~ 17167078 (-)
G2206796 NA non-coding downstream 66543 17157500 ~ 17157769 (-)
G2206769 NA non-coding downstream 66873 17156103 ~ 17157439 (-)
G2206889 NA non-coding upstream 91136 17344167 ~ 17345336 (-)
G2206891 NA non-coding upstream 94218 17347249 ~ 17347653 (-)
G2206968 NA non-coding upstream 209191 17462222 ~ 17462445 (-)
G2207754 NA non-coding upstream 281803 17534834 ~ 17535103 (-)
G2206739 NA other downstream 199961 17023432 ~ 17024351 (-)
LOC110521421 LOC106584447 other downstream 844644 16377972 ~ 16379704 (-)
G2205743 LOC100194703 other downstream 940380 16283488 ~ 16283932 (-)
G2205496 NA other downstream 1073775 16150133 ~ 16150537 (-)
LOC110521406 dennd2a other downstream 1847886 15322978 ~ 15376606 (-)
G2206890 NA other upstream 93786 17346817 ~ 17347569 (-)
G2207736 NA other upstream 229338 17482369 ~ 17500307 (-)
G2208092 NA other upstream 932484 18185515 ~ 18185985 (-)
G2208093 NA other upstream 934094 18187125 ~ 18187525 (-)
LOC110521464 LOC106584409 other upstream 1053088 18306119 ~ 18392555 (-)

Expression

LOC110520947 Expression in all Baseline Samples

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LOC110520947 Expression in each Bioproject

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LOC110520947 Expression in each Sample
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Co-expression Network