LOC110521441 (LOC106584427)


Basic Information

Item Value
gene id LOC110521441
gene name LOC106584427
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 17377090 ~ 17419371 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598988.2
GCAGCAACAGCACAGATGTGCTCCACTGAACAGCAGCAGCagggctgtctctctccctcacacacacatgcgcacacacacacactcacatgcccCTGTAGTGAAAGAGCACACCATCACCAGCTCAGGCTGTCACAGTGGCAGAGACACAAAGCCCTGTGCCCAATGGGAACCAGAAGCTGACTCTGGAAcacaaagaagagagagagagagggggaaagagacttCAGTTGCCTTTTCATCTGCAGAGGCAGAGGGAAGAGGTTGATGCACTATAGATAGCGGGAGCgagggggagcgagagggggagcgagagggggagcgAAGCAATTGCAGTCAGGCTCAGTTGCTGCTGTCAAAAGCTGGAGGCTCAGTGAGTATTATCATAGGGAAGCTGGTGGAGCAACATCACAGTCCAACACACACTCTCTGGACAGACGGACCGCAGAACCAGAGACGcacaggcaacacacacacaccgagtgaGGACCAGGCTTGCGAACGTGGATGGACCACCGGTCAAGATCTGGgtgtctggAGCAGTGATCCAGACCCAGTGGTGCAAAGGTAGTGAGGGGACATGGCAGCTGTTCCAGGCCTGGGGTGGCCTGGCCTGCTACTGTTGCTGCTGACTACTGTGGCCTCCACTCAGAGCCAAGGCTGTCCCCAGCGCTGTGAGTGCATGGCCAAGCTCAAGTCTGTGGCATGCCAGGGCAAGCGCCTGTCTGCCTTCCCCGACGGCATCTCCTCGGACACACGTCTGCTGGACCTGAGTGGGAACAGGTTTCGCTGGGTGGAGCATGGcgacctcctctccttccctcggCTGGAGGAGCTGGACCTGAGTGAGAATATCATCACCGTCCTGGAACCCAACGCTTTCTCCAGCCTGCAGAGCCTGAGGGTGCTGTCGCTGAGGGGGAATCAGCTCAAACTGGTCCCCATGGGCGCCTTCTCACGCCTCACCAACCTCACCACACTGGACCTGAGCGGGAACAAGATTGTCATCCTGTTGGACTTCACCTTCCAGGACCTGAAAAGCCTGAGGAACCTGGAGGTTGGTGACAACGACCTGGTCTACATCTCCAACAAGGCCTTCCTGGGCCTGGTGGGTCTGAGGGAGCTCACCATTGAGAGGTGTAACCTGACCTCCATCTCCAGCCAGTCTCTGTCCTACCTCCGCAGCCTGGTCACTCTGCGCCTGCGCTACCTCAGCATCTCCTCCTTGGAGGACCAGAACTTCCGTAAACTGGGCGGGCTGCGGGGGCTGGAGATCGACCACTGGCCTTTCCTGGAGCACATCTCCCCCCACAGCCTCCAGGGCCTTAACCTGTCCTGGCTGTCGATCACCAACACCAACATCACCTCCGTGCCCACGGCCGCCCTGCGCAGCCTGCCCCAGCTCATCAGCCTCAATCTCTCATACAACCCCATCTCTGTGCTGGAGTCCTGGGCCCTGAGGGACTTGGTCCGTCTAAAGGAGCTGCACTTGGTCAACACCAACCTGATGACGGTGCAGCCGTATGCCCTCGGCGGCCTTCGGCAGATCCACCTGCTCAACCTGTCCACTAACGCCCTGGTAACCCTGGAGGAGGGTGCCTTCCAGTCCGTCAATACCCTGGAGACGCTGCGTGTGGATGGGAACCCTCTGTCCTGTGACTGCCGCCTGCTCTGGATCCTCCAGCGCAGGAAGACCCTCAACTTTGAAGGGAAGTCCCCAGTGTGTGCAGGCCCCATGGAGGTGCAGGGCAGGGCCCTCAGCGCATTCTCAGACTCTGCCCTCTTTGACCACTTTACCTGCCAGAAGCCCAAGATACGCAACAGGAAGCTGCAGCCAGTGACTGCCAGGGAGGGCCAGGTGGTGTCTTTTGTGTGCCGGGCGGAGGGTGAGCCCACACCTATCATCTTCTGGGTATCTCCCCAGCGCCGCCGGATCACTACCAAGAGTACTGGACGTGTCACCGTCCTACCCGAGGGAACGCTGGAGATTCGCTACGCCCAGCTGACCGACACCGGCACCTACATCTGCATTGCCAGCAACGCCGGGGGCAATGCCACCTACTTTGCCACGCTGACCGTGAGTTCACTGCCTCTGGACGCTGCACTCATGGCCAACCGCACATACTACACAGGTGACCTCAACGAGACCAATCTGAACGACACCAAGGTCTTCCTCAAGTTCACCTTGGACCTCAAGACAATCCTGATATCCACAGCCATGGGGTGTTGCTTGTTCCTTGGCGTGGTGGTTTTCTGTTTCCTGATGCTGTTCGCATGGAGCCAGGGCCGGGGACAGCACAAGAATAACTTCTCAGTTGAGTACTCTTTCAGAAAGGTGGACGGCCCTGCAGCCAGCGGCGGACAAGGAGGGGCCCGCAAGTTCAACATGAAGATGATTTGAGTCAGAAAACGGCTCACTCTGTTTACTAGTAGACTCAGATGGGGACACAATAATAACTTTGGACTTTATGATTCTGATCCCTATTGGTTCAGAAATCAACAAATTAGGTGATCTAAGACAATGTACTAAaactttgttttgtatttgtaaaTGTCTGTATCAACAAAAAGTAAATAGGTAAATGGATTTGGTACAGACACATTTTTTCTCATTTGCTATTTGTGTATTGTGGTTTATCTTGTGCAGAGGAGTCTGGATGATAGTTAAAGATGTCACTAAATCCCATTGACTGTTAAAATTCTAAACACAACACCCCTGCACagctccatctgtctctctgcaaTGCACCCTCCCCTTTTAAGGTTCTTAAAAGAGGAGGGTGACCTGGAGCTCTGAGGTATGGGAACGCATGGAAAAAATGACCTTTATGttaaagcattgcatgcattaTCACCGCTTTTGCTTCCTGGCATAGAGCAGTATAGTAGAGGCACTTGTagaagttgcacacatggggCAAACATTTGTAGTCTAGGGTCTGGGAAAAATGTGGCCTTTTatatttcttgcaattctacataATTTTAGATGACTGGAGACTAGCAGAATATTTTTTATACCTCACAAATTATTAAATTgtcaggctactttgacactgacaaactgagaatctgagatcaataaaaacgaccttgtcttgaatccatcagtAGCCTAGGCCTAGGTTTGTGGAGACACATAttgtacaatatgaggaggaaaatATAGTCATAAAAAggtttccagtttcactgactcaacCAATGATGAGCAGCTCACTCATGGACATGGCCGATGCGCTCGTGCCAAAAGCTTGTCGCTCTCGTTTTACTTTGTAAGACAATGCTGTTCGCTTAATAGGCCTGTTTGGAAGTTGATAACTTGGTAGCCTACAATCAGATTAGTATTGTTTTTTCGGCAGGATCCCTTTCatttccaacctgtgttttctCGCGATTGCATTTTAAATATTGCGAAAGGCCTGTTTTGGCtgcatgctgttcactgacagatttgcctcGCGTTCCTGACTCTCAGCATGCCTTGTGATTGggctacacacaatccacagcaaggctatttaaaaaaatatattgattctCTGTAGCTAAATTATAGTCCAACTCCTGATGTAGTATTCAGAATTATGTCATTTCTTTCTGAACATGGAGGTAATTCTATtactttggcaaatgtatttgaaTTCATCATGGGTGCTGTGGCACCTTCAGCACCCCTCCTGCGTatatgattctataaggaaataaatgatgaagtgcaactctggagagatgagagttgagaggctcatgtctatcagaacagggagagggagagagctcatagaaagtgaatctcattctagttaTGTGAGGGATAGatgctgtcttctctctctcaccgcaGCTCTGGCCATGCGTTGGTGTATAAAGGTTACAGTGTTGCGCCAACCATAAACCCCCGCCTGCCAACACAAATCAATTCTTAGAATATTAGGCACGTTTTAACATGACGTTTTTCAGGGGGCAGCCAGGAGAATTACAAAGGAGAACTTGAATTAACTCTGATAGCTTTTATTAGGATTTTTACATTTCAAACAGTGAAAATTATTTGTCACGCAACGAGAGGTACCGGATCCTGATAAATGGGTTCTGGAAAGAAGCAGTCAAAAACTGAGAGGTGCCGGCTCGCTCAAATTACGCCCTGCTTAACAGTATTTTATATTGTACACTCCCAAGCTAAAACCATACAGAATGACTCCAAATGCAAACTACATTACAGGAGACGTCCAACCTCATCTGTCATTCAACAGCATTAAATGCTGCTTCACATTTGACTAGTTTCATTTTTCAAATGGATTTGTTACGTAAAGTACCCTGAATGACCAAGTGAAAAATGTATAAACCTGGTGTACAGGTGAGTGATCACAAACAAAACCAGACACAATTTGCTATGGGATCAGATGGAGGTGGTGTATTTAGCAATAGTGACATGCCCTCAGACTGCACCCCATCTGAAAATGTATACAAAACGTTTTGTGTAtgtatattgttgttgttggGTGTTCAGATTTGTTGTCTCAGTTTCTAAATTACTTGCTATATAACCTTT

Function

NR:

description
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 3

GO: NA

KEGG:

id description
K23533 LINGO, LRRN6; leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598988.2 True 4552 mRNA 0.50 2 17377090 17419371

Neighbor

gene id symbol gene type direction distance location
atp8b3 LOC106584241 coding downstream 63925 17279939 ~ 17313165 (-)
LOC110520947 NA coding downstream 124059 17224312 ~ 17253042 (-)
LOC110521438 LOC106584429 coding downstream 157858 17207651 ~ 17219232 (-)
tmek mp2k2 coding downstream 178584 17188910 ~ 17198506 (-)
LOC110521437 LOC106584433 coding downstream 189693 17168403 ~ 17187397 (-)
oaz1a oaz1a coding upstream 45312 17464412 ~ 17474822 (-)
LOC110521444 NA coding upstream 69779 17489150 ~ 17491121 (-)
LOC110521445 LOC106584426 coding upstream 78891 17498262 ~ 17533929 (-)
LOC110521446 ell coding upstream 140401 17559772 ~ 17602241 (-)
LOC110521447 fkbp8 coding upstream 183635 17603006 ~ 17611953 (-)
G2206891 NA non-coding downstream 29437 17347249 ~ 17347653 (-)
G2206889 NA non-coding downstream 31754 17344167 ~ 17345336 (-)
G2206802 NA non-coding downstream 202668 17173781 ~ 17174422 (-)
G2206801 NA non-coding downstream 208936 17167176 ~ 17168154 (-)
G2206968 NA non-coding upstream 42851 17462222 ~ 17462445 (-)
G2207754 NA non-coding upstream 115463 17534834 ~ 17535103 (-)
G2207755 NA non-coding upstream 115876 17535247 ~ 17535485 (-)
G2207757 NA non-coding upstream 118641 17538012 ~ 17538279 (-)
G2206890 NA other downstream 29521 17346817 ~ 17347569 (-)
G2206739 NA other downstream 352739 17023432 ~ 17024351 (-)
LOC110521421 LOC106584447 other downstream 997422 16377972 ~ 16379704 (-)
G2205743 LOC100194703 other downstream 1093158 16283488 ~ 16283932 (-)
G2205496 NA other downstream 1226553 16150133 ~ 16150537 (-)
G2207736 NA other upstream 62998 17482369 ~ 17500307 (-)
G2208092 NA other upstream 766144 18185515 ~ 18185985 (-)
G2208093 NA other upstream 767754 18187125 ~ 18187525 (-)
LOC110521464 LOC106584409 other upstream 886748 18306119 ~ 18392555 (-)
LOC110521505 LOC106584372 other upstream 2654118 20067742 ~ 20083690 (-)

Expression

LOC110521441(LOC106584427) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 2.
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LOC110521441(LOC106584427) Expression in each Bioproject

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LOC110521441(LOC106584427) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 75.
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Co-expression Network