Item | Value |
---|---|
gene id | LOC110521548 |
gene name | LOC106584340 |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_050570.1 |
NCBI id | CM025857.1 |
chromosome length | 46327593 |
location | 21666793 ~ 21800817 (-) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_021599152.2 | False | 5819 | mRNA | 0.51 | 27 | 21667199 | 21800817 |
XM_021599153.2 | False | 5801 | mRNA | 0.51 | 26 | 21667199 | 21800817 |
XM_021599155.2 | False | 5666 | mRNA | 0.51 | 26 | 21667199 | 21800817 |
XM_036968959.1 | False | 5648 | mRNA | 0.51 | 25 | 21667199 | 21800817 |
XM_021599156.2 | False | 5307 | mRNA | 0.53 | 27 | 21667694 | 21800817 |
TU2531310 | True | 660 | lncRNA | 0.32 | 1 | 21666793 | 21667452 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110521545 | NA | coding | downstream | 306320 | 21352715 ~ 21360879 (-) |
LOC110521532 | LOC106584351 | coding | downstream | 947467 | 20717114 ~ 20719732 (-) |
LOC110521534 | NA | coding | downstream | 952588 | 20705949 ~ 20714611 (-) |
plekhb2 | pkhb2 | coding | downstream | 1011867 | 20648384 ~ 20655332 (-) |
cts12 | LOC106584253 | coding | downstream | 1036430 | 20628580 ~ 20630769 (-) |
LOC110521551 | LOC106584337 | coding | upstream | 209526 | 22010343 ~ 22107387 (-) |
LOC110522763 | LOC100286605 | coding | upstream | 379280 | 22180097 ~ 22654975 (-) |
LOC110521557 | LOC106584333 | coding | upstream | 494797 | 22295614 ~ 22321717 (-) |
LOC110521561 | LOC106584330 | coding | upstream | 1062558 | 22863375 ~ 22868980 (-) |
LOC110521562 | LOC106584329 | coding | upstream | 1074487 | 22875304 ~ 22963761 (-) |
G2212756 | LOC106581475 | non-coding | downstream | 1325 | 21664747 ~ 21665874 (-) |
G2212747 | NA | non-coding | downstream | 14993 | 21651970 ~ 21652206 (-) |
G2212741 | NA | non-coding | downstream | 19366 | 21647603 ~ 21647833 (-) |
G2211490 | NA | non-coding | downstream | 182538 | 21484451 ~ 21484661 (-) |
G2211477 | NA | non-coding | downstream | 186118 | 21478753 ~ 21481081 (-) |
G2212882 | NA | non-coding | upstream | 65711 | 21866528 ~ 21866809 (-) |
G2212888 | NA | non-coding | upstream | 79746 | 21880563 ~ 21880781 (-) |
G2212889 | NA | non-coding | upstream | 81112 | 21881929 ~ 21882135 (-) |
G2212902 | NA | non-coding | upstream | 98452 | 21899269 ~ 21899533 (-) |
G2212906 | NA | non-coding | upstream | 103031 | 21903848 ~ 21904070 (-) |
G2212755 | NA | other | downstream | 584 | 21665964 ~ 21666615 (-) |
G2211274 | ttc14 | other | downstream | 360657 | 21304841 ~ 21306542 (-) |
G2210769 | NA | other | downstream | 1144088 | 20518340 ~ 20523111 (-) |
LOC110521508 | LOC106584371 | other | downstream | 1531984 | 20129636 ~ 20197258 (-) |
LOC110521505 | LOC106584372 | other | downstream | 1583615 | 20067742 ~ 20083690 (-) |
G2212908 | LOC106613883 | other | upstream | 107146 | 21907963 ~ 21910736 (-) |
LOC110521564 | LOC106584326 | other | upstream | 1185542 | 22982517 ~ 23008109 (-) |
G2213654 | NA | other | upstream | 1377689 | 23178506 ~ 23179611 (-) |
G2213647 | NA | other | upstream | 1396830 | 23197647 ~ 23199406 (-) |
G2217605 | NA | other | upstream | 4116537 | 25917354 ~ 25920245 (-) |
G2212758 | NA | non-coding | upstream | 1475 | 21668927 ~ 21669339 (-) |
G2212790 | NA | non-coding | upstream | 60113 | 21727565 ~ 21745926 (-) |