LOC110521564 (LOC106584326)


Basic Information

Item Value
gene id LOC110521564
gene name LOC106584326
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 22982517 ~ 23008109 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968765.1
TCATGTTCTGTGGGCTGGAAGCCCCTTTCAGAGGGTCTTCAAATCTAAAAAGGAAATGTTGTTTGTAGAACATGAATGATTAAGTTTGTTCAACTTGAGCATAGGCGTTGTGAGAGTTCTAGCTAATGAATAGCCTAACTTAGCACGCGTAAAATAAACAAACAATCTTAATCATATGTAGATGGTCGTCCGCGCCAGGGTATCAATCAGCTAGCCTGGCTCTTTGTGTGCGCATGTTTTGTTTGTGTTGAACAAGGACAGTTCTCGTGGCTTGTTAGATGATTTGCAATGTGTTAATGTCAGTAAGATTGCATAGTGCATACGGTGCTTATTTTTATGAAAGGTTAGGGAAAGTGGCCTGTAGACGTTGCAAAGTGACAAATACATAAGGAGTTTGAAGAGGAGATGGGAAATTGTCTAAAATCTCCAACCTCGGATGACATTTCCTTGCTTCATGAATCACAATCGGATAGAGCTAGTTATGGTGACGGGGCAGATACAGACCAGGAACCACCGCCACCATACCAGCAGGAGCTGCCAGTGTACCACCCCACGCCCAGTCAGGCCCGCATGGCCAGCCAGCTGACTGAGGAGGAGCAGGTCCGCATTGCCCAGCGCATTGGCCTCATCCACCACCTCCCCAAGGGAGTGTACGATGCTGGCAGGGACGGCTCCGAAAAGAAAATTAGAGAGTGTGTGATTTGCATGACGGACTTTGTGTATGGGGATCCCATCCGATTCCTGCCATGCATGCACATCTACCACATGGACTGTATAGATGACTGGCTGATGCGCTCCTTCACCTGCCCCTCCTGCATGGAGCCAGTGGATGCTGCGCTGCTCTCCTCCTACGAGACCAACTGAGACACAACACCACCCCCCTCACCACCACCCCTGCTCGCTGTTCTGACTTACTCCCTTACTCTACCCATGATTCCATCTCCAGCACCCCCACAACCAGCAGACAGCACTTCCAACAGCCTGGAGAACCTGGGTCTCTGGGGGCAGGtgagggctgtgtggtggtgatgAAGGGTGCTGTAGAGGGTTGGTGGAGGCCATGGATGGAGAGGGATCCTTTGCTCTGAGCTGGCCAGGTCTGCTGGACAGGAAAGCCCCGGCTGGGGAAGGACGTTGGATTCTGGTGATCCACACCCagaattcccctctctctcactaccacACTGTTGTAGTAAATGCCctagggagggggaggaaagcaAAAGCTCAAAACTCTCTCTAGAAATACTGATATCTGCAAATATTTTCTCTCCTCGTTGTTTTCAACTCAACATCTGTTCCAGAAGTCGTCTTAAGGGCTCAGTGGATTACATTTACTAACACAGATAAGCAAACGATTAATGCACATGTACACAAGTCAGAGGAACTTGCACTTCTATTCTAGTCTCAGTGGAAGAGTTCAGCATATGCTTACAAATGTTTGAAAATTATTTCAGATTTTTCCCATTACTTAGTATCTGCAACATGAAATGTTTTTTTCAAGCCATTGTAATTGTTTCAGCCCAATGGTAAGGTCTGTTTTCCTGAAGTTGACATTTTATCCTTAATTGGTGAGTTTCTTAGACTAATGATGGATCAGTAAAAAAGTGTTCCTTTTGGATGAAGAGGTTTGGGGTCTGCACTCGATTATTACAAAGGATTAGGCCTGTTAGGGTTTGGTCAAAAGGTGTTATCGATCATAATGCTCCTTAACTGCTCTTGCTTAGCACAGTTCTTAAATTGCACATCAGAAATACTCAACGTTTACGGCACCCAATTCAGCACAAGTGTCTTAATCTTATTACCAAGAACGCCATATGATTTATCATAATGCATACACACTAGAGTCATTTAATTAATTTACATGAATTTAGTCACATAacctagagcagtggtcaccaacctgtCTATCACCatcgactggtcgatctccaagcATTCCCAGtcaatcaccaaacatttctgtaaaaaacccaaTGATAAAGTCTTGTGTTCctaatttttttatttgtttcgcgctgttggtggtaggtgcgcTTGATTCAGTAGCCCgggaaggcaaagtgttccccttttgaaccatttcatgtgtctgatgGTAGAACTCTGCCTACCCGGCAGGCCCATAGAGCAAATCAACAGTGCACCTATAAGCCTAACGCTGGCCAATCAAATGGCTCAGATAACCgtgtctgcacagtttcctcGACCATAGACTGTTAAAGGACGTATCGAACGCACAGCAAAGTcaatactgtgagatttcaaaacgtttaaaaccatgacctagagagagactcaatgaatacagctgcaatTTTTATGAGTAAGTTCATGTTTAAGGTGTTATTATCAACACAatgttcaacacttttataagccatacAATGCACATTCTACCTACTTCCACTCAAGCTACACCCAGCACTGCAGCCTCAATGAATGAGTATAGCAAAGTGATCCAATAAGCttgcgttgttattattagcggcttgtcttttttaatatcaaggaatatttcactttctctggtcattgGAGTAACAACattaatttgtgcatgaggcagaaataatgcagtgcgacttgagtttcgccatcagctggaagactgtcccCTTTTCTAAGCGGGGGGATGGTTAGTCAGGTGTGAGGCAGCATCACCGCTGCGCCCTCTTTTTCCCTCATACTGACCATAAGATGCAgtccatcagtccagtaaaaaattcaataaagaaaaaaaagctgtgcctcacaagtaatacaacaaatgatcTATTACCAGTGCGATcacatgtttaaaaaatatattatttctaaatggtctgagaagaacaacattgcCAATttaagcatagccaatatgcagtggtaatatattgggcctatagcctactgcacaaacctcattgctacagaactgcttttaattggttaatgttgatTAGGTTTTTTAAGTCatgtaaaaaaaagaaatctgGGCGGTAGATcttggcttgcattttgactctgtgatcttgactcagaaaaggttggtggcCACACTGCCCTAGAGTTTATTTCTTAGTTCAGCATATGAGCCATCACATTGTTGTGCAAGGGGTTTGGATGTGAGGGTGCTAACCACCCCAGCTTCTTAGATTTTTGTAGGTAGTCATCTGAGCacgtgcatttttttttttatcctacttttaaataatgttttcatAATTAAAAATAGAAAATATCCCTTGTGTATTATCATAACAATTGTTCAATCAGCACAGTTGGCTGTTGCAAAAAGTTCAAATATTGGGTATGGTTTTGGTCATAATTATGTTGCTGTATTTTGACTGGCAAAAATGTAATTGAATGTATATTGGGGAAAAATAGTGTAAGTTTTTCCAAAATGGGGGCAGGTAGCTCTCGTGAAGTGATCATTAAGATTTAATCAGAAAGTATTTAAGATGTACTTTGTTAAAGACTACCCCGAAAAAGCAACTTGTTTTGAAAATGGCCTATGTGATATGAGTTAGACAGAcacatttattctagtgtcaaaattgattacaaagtgtaaataggataattctGGTCATAAAGTTGGTCTCGTCCAAAAACTGAGATTTTTGAGATGATAGGAAAAAATGGTATGTCATAGATTGAAGGGTATCGTAACCTTTTTCCATGGGTTGGGTTTATTTTTAAACCTGTCCACAGCTGGCCACACCAAAGTAATCATCATTTCTGAGTGCAGCTACATGCAAGAGGAAGTTGCCGCCACTATTTTGACATAGTTTCCTGTCCTAGAAAGGAAATGCACATTTAGGTTCCACCTACGAAGAATGACGAAAGCTATTTATACCTATTCACAAATTGGGTCTGGGAATTTCCACAGAGTTGATAAACGTCAAAAAATGAGGCACTGACTGTGTAggtagctagcatgctaaccttatctagctagctatcttgcaAACCTTatctaactagctaatgttatttGTTGCTGTTTTTGTTTTACTACATGGTATTCAAAAGAGCTGAATTTGTAATTGGCATTGATTTAGGGAAAACAAAAGCCTcagatggaaaccactggccTATCTTTGACTTTGCCATCTATTGTTATCTCTGTTTGGGCATTTTCCATCAATTGTGGCCTCGAATTTGGGATAGAAATATTTAGAAAGAGTAAGATGAAGCTTTGTTAATATGGATAACTATTGAAATATGATAtgcgtttttttttacattgtaatgGACACGGTGCAACCTTTGGTAGGAAGATTGCTGGAATTCTTCAGCTGCAATACAGCAAAGCCAAGTCAGCCCGTGCTCATGGTTCTCACAGTGGAAGTGAAATGATAGACTACAATGACTATGATCATGCACGCCTCAAATGACATGTAATTATAGTAGTGAAGCCATTCATCTTGGGGAGACTGGGGCAGCAGGTTTTCAAAATGCTTTTATACCATTTATAAAAtggtcagatatatatatattttttaagacaGTCTAAAAAAAATAAGTGAAAATTGACAAATTATCCAATGGATTATGATCATTTTCTGGTCAAAAAAGGGGAGGCGCAAAAATATGTTTGCACCCACTATTTTAATTTTCTCCATGTCTCAGGCTCTTTGGCTCATCTCAGTTGCGAAGAGAAATAACTTTGCAGCTGTTTCTGATTAATAAACAATGCCATACTGGTGGGTTGTAACATTCAAATAGAAACCAGTGCTGAAATAATTTGTACGTCATATCAGAGGGAAAGACACTGCATTCACAGATTTGCACATAGTGGGCAGTTTGGATTTGTCACTTCAAGCCCAAATGTATTGTACTTTGACTAAAACAATTACTTAATGGCTTAAATTGTTGTGCAACATAATGGGTAAGCTCTGGCTTTAAAAAGTGGATTTCTACTGGTGTGGGCATTTTAAAATCAGCTATACATTTTAGAAATGTATATAAATATTGAAAGAGTTTGAGACAACTAAAAGatgtgcaacatgaaaatattgtcccatttacATTGTGTTATTGATCGACAGTCCCTAACTGTCCACCGAGataggctatccaaagtcaaaccaacTTTGCCAGAGTCACACACCAGCCGGCTGAAGCTAAATTATTTGGCTAACTCTTCCTACCTGCGAACACACACGAGATACCCATATCAAACCGAACCCGAAACTAACTCGCGTTTGAGTTCACTCGTGGTCGCTAGCATTTCCTAATGAACCAAATCTCAaacgaggccaaatcaggaagtgcagttgTCTTTTAAATTGAAACCTCTTAAAACTTTATATTTTCTCATAGTTGGGGGCAAAATATGCCCATTTCCACTATCTTCTTAATCACAGGTAGTATTTTGAAAAGGGGTACATTATATATTTCACAGAGGAAGTAGTAACTTGTTATCACTGTTTTCCCCTCATCTCAGACAATAAGGGAGTTCTATTAACCTAAACTGCGGAGCACCGGTCTATGGCCTGTGACAAGAACGGGTGAAAGCGGTGAGGGAGGAGCTCCCTTCTCAAATCGAACAGTAATCTGCACTGTTCGGTCATGATGTCAACAAGGCACCATGGTGCACCGTCCAGAAATGTACATCTCTTTTCCATAAAATATATAACGTCTTATCTGCCTTAATTCGGAAGGCAGATAAAGCATTTTTATCAACAGCAAAAACTTTTGCATGTGAATAGACAAGAGTCCTACTCATTGCGCCACGTGCTTAATCTAGCCTAGGCTACGGCgcttttgttttgagccgacttCGCCGTTGGCTTTGAAAGGGGTCACTTGGCTCGCCCCAGGACGTAGCCCGGTTCCAAAACAAATGCAATCACTTTTCAGCCGGTGCAAACTCCTCCCTCTGGGACAACCCAGGCCAGATAATCAAATCCCCTCATTAAACTCACCCCTGCCAGCTCTCATTGGCATTAAAAAGTGTTAGTCACATTCGTAAGGTATACCCTTTGCACGTAAGGCAACATAATGATACAGATGAAAACATGCCTTGAGTGATCATAATGGTTGTGGGGGTATGTGGAGCTCCATTACCTTAGATCTTATGAGAGAGTTATTGACTGGCTCCCAGGCTGGCATGGGACCAACACTAGCTGAAAAAGATGAGATGCCTGAAAATGGAGCCCAGACATAGCATAGGAAGGGCCTGGTTGCTGCCCATGAGTTTTGAGGATGCTAGAGATGATGCAACAATGTGATAGTGTACTTCAAATTATCCACTGCCCCCAACAGCATAAATTACAGGAATGCACTGCAAGACTGGGCAGATAAATGTatggtatgtgtgtttgtatgggtgCCTGTAAGAATTGTCTTTGTACAGGATGCATATGATATGTACTACAGGCAAATAATAAATAGAAACTATGCTATGGAA
>TU2532103
CACTCACTATCTCTTTGCAGCACTGATACAGATGCCAGATAATCAAATCCCCTCATTAAACTCACCCCTGCCAGCTCTCATTGGCATTAAAAAGTGTTAGTCACATTCGTAAGGTATACCCTTTGCACGTAAGGCAACATAATGATACAGATGAAAACATGCCTTGAGTGATCATAATGGTTGTGGGGGTATGTGGAGCTCCATTACCTTAGATCTTATGAGAGAGTTATTGACTGGCTCCCAGGCTGGCATGGGACCAACACTAGCTGAAAAAGATGAGATGCCTGAAAATGGAGCCCAGACATAGCATAGGAAGGGCCTGGTTGCTGCCCATGAGTTTTGAGGATGCTAGAGATGATGCAACAATGTGATAGTGTACTTCAAATTATCCACTGCCCCCAACAGCATAAATTACAGGAATGCACTGCAAGACTGGGCAGATAAATGTatggtatgtgtgtttgtatgggtgCCTGTAAGAATTGTCTTTGTACAGGATGCATATGATATGTACTACAGG
>TU2532098
TTGTTTGTAGAACATGAATGATTAAGTTTGTTCAACTTGAGCATAGGCGTTGTGAGAGTTCTAGCTAATGAATAGCCTAACTTAGCACGCGTAAAATAAACAAACAATCTTAATCATATGTAGATGGTCGTCCGCGCCAGGGTATCAATCAGCTAGCCTGGCTCTTTGTGTGCGCATGTTTTGTTTGTGTTGAACAAGGACAGTTCTCGTGGCTTGTTAGATGATTTGCAATGTGTTAATGTCAGTAAGATTGCATAGTGCATACGGTGCTTATTTTTATGAAAGGTTAGGGAAAGTGGCCTGTAGACGTTGCAAAGTGACAAATACATAAGGAGTTTGAAGAGGAGATGGGAAATTGTCTAAAATCTCCAACCTCGGATGACATTTCCTTGCTTCATGAATCACAATCGGATAGAGCTAGTTATGGTGACGGGGCAGATACAGACCAGGAACCACCGCCACCATACCAGTAATTACCCAGGTCTATTCTCAGGCCTACGTCTGGGAATTTCCATACAACGATTTTGTCGTTCTCCACCAGGAGCTGCCAGTGTACCACCCCACGCCCAGTCAGGCCCGCATGGCCAGCCAGCTGACTGAGGAGGAGCAGGTCCGCATTGCCCAGCGCATTGGCCTCATCCACCACCTCCCCAAGGGAGTGTACGATGCTGGCAGGGACGGCTCCGAAAAGAAAATTAGAGAGTGTGTGATTTGCATGACGGACTTTGTGTATGGGGATCCCATCCGATTCCTGCCATGCATGCACATCTACCACATGGACTGTATAGATGACTGGCTGATGCGCTCCTTCACCTGCCCCTCCTGCATGGAGCCAGTGGATGCTGCGCTGCTCTCCTCCTACGAGACCAACTGAGACACAACACCACCCCCCTCACCACCACCCCTGCTCGCTGTTCTGACTTACTCCCTTACTCTACCCATGATTCCATCTCCAGCACCCCCACAACCAGCAGACAGCACTTCCAACAGCCTGGAGAACCTGGGTCTCTGGGGGCAGGtgagggctgtgtggtggtgatgAAGGGTGCTGTAGAGGGTTGGTGGAGGCCATGGATGGAGAGGGATCCTTTGCTCTGAGCTGGCCAGGTCTGCTGGACAGGAAAGCCCCGGCTGGGGAAGGACGTTGGATTCTGGTGATCCACACCCagaattcccctctctctcactaccacACTGTTGTAGTAAATGCCctagggagggggaggaaagcaAAAGCTCAAAACTCTCTCTAGAAATACTGATATCTGCAAATATTTTCTCTCCTCGTTGTTTTCAACTCAACATCTGTTCCAGAAGTCGTCTTAAGGGCTCAGTGGATTACATTTACTAACACAGATAAGCAAACGATTAATGCACATGTACACAAGTCAGAGGAACTTGCACTTCTATTCTAGTCTCAGTGGAAGAGTTCAGCATATGCTTACAAATGTTTGAAAATTATTTCAGATTTTTCCCATTACTTAGTATCTGCAACATGAAATGTTTTTTTCAAGCCATTGTAATTGTTTCAGCCCAATGGTAAGGTCTGTTTTCCTGAAGTTGACATTTTATCCTTAATTGGTGAGTTTCTTAGACTAATGATGGATCAGTAAAAAAGTGTTCCTTTTGGATGAAGAGGTTTGGGGTCTGCACTCGATTATTACAAAGGATTAGGCCTGTTAGGGTTTGGTCAAAAGGTGTTATCGATCATAATGCTCCTTAACTGCTCTTGCTTAGCACAGTTCTTAAATTGCACATCAGAAATACTCAACGTTTACGGCACCCAATTCAGCACAAGTGTCTTAATCTTATTACCAAGAACGCCATATGATTTATCATAATGCATACACACTAGAGTCATTTAATTAATTTACATGAATTTAGTCACATAacctagagcagtggtcaccaacctgtCTATCACCatcgactggtcgatctccaagcATTCCCAGtcaatcaccaaacatttctgtaaaaaacccaaTGATAAAGTCTTGTGTTCctaatttttttatttgtttcgcgctgttggtggtaggtgcgcTTGATTCAGTAGCCCgggaaggcaaagtgttccccttttgaaccatttcatgtgtctgatgGTAGAACTCTGCCTACCCGGCAGGCCCATAGAGCAAATCAACAGTGCACCTATAAGCCTAACGCTGGCCAATCAAATGGCTCAGATAACCgtgtctgcacagtttcctcGACCATAGACTGTTAAAGGACGTATCGAACGCACAGCAAAGTcaatactgtgagatttcaaaacgtttaaaaccatgacctagagagagactcaatgaatacagctgcaatTTTTATGAGTAAGTTCATGTTTAAGGTGTTATTATCAACACAatgttcaacacttttataagccatacAATGCACATTCTACCTACTTCCACTCAAGCTACACCCAGCACTGCAGCCTCAATGAATGAGTATAGCAAAGTGATCCAATAAGCttgcgttgttattattagcggcttgtcttttttaatatcaaggaatatttcactttctctggtcattgGAGTAACAACattaatttgtgca

Function

NR:

description
PREDICTED: RING finger protein 11-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968765.1 False 6403 mRNA 0.41 3 22982517 23001306
TU2532103 False 520 lncRNA 0.43 2 22982547 23008109
TU2532098 True 2571 TUCP 0.45 4 22986359 23001248

Neighbor

gene id symbol gene type direction distance location
LOC110521562 LOC106584329 coding downstream 18756 22875304 ~ 22963761 (-)
LOC110521561 LOC106584330 coding downstream 113537 22863375 ~ 22868980 (-)
LOC110522763 LOC100286605 coding downstream 327542 22180097 ~ 22654975 (-)
LOC110521557 LOC106584333 coding downstream 672681 22295614 ~ 22321717 (-)
LOC110521551 LOC106584337 coding downstream 875130 22010343 ~ 22107387 (-)
LOC110521565 LOC106584325 coding upstream 521 23001827 ~ 23025456 (-)
LOC110521566 LOC106584324 coding upstream 27312 23028618 ~ 23062275 (-)
calr LOC106584323 coding upstream 61179 23062485 ~ 23066969 (-)
LOC110521568 LOC106584322 coding upstream 70367 23071673 ~ 23074069 (-)
LOC110521569 NA coding upstream 80795 23082101 ~ 23084793 (-)
G2213430 NA non-coding downstream 205578 22747989 ~ 22776939 (-)
G2213395 elavl4 non-coding downstream 236693 22689204 ~ 22745824 (-)
G2213396 LOC106613894 non-coding downstream 254796 22717223 ~ 22727721 (-)
G2213083 NA non-coding downstream 791379 22190439 ~ 22191138 (-)
G2213589 NA non-coding upstream 24830 23026136 ~ 23026365 (-)
G2213606 NA non-coding upstream 73792 23075098 ~ 23075304 (-)
G2213607 NA non-coding upstream 74161 23075467 ~ 23075771 (-)
G2212908 LOC106613883 other downstream 1071781 21907963 ~ 21910736 (-)
G2212755 NA other downstream 1315902 21665964 ~ 21666615 (-)
G2211274 ttc14 other downstream 1675975 21304841 ~ 21306542 (-)
G2210769 NA other downstream 2459406 20518340 ~ 20523111 (-)
LOC110521508 LOC106584371 other downstream 2847302 20129636 ~ 20197258 (-)
G2213654 NA other upstream 177200 23178506 ~ 23179611 (-)
G2213647 NA other upstream 196341 23197647 ~ 23199406 (-)
G2217605 NA other upstream 2916048 25917354 ~ 25920245 (-)
G2217805 prrc2c other upstream 3235379 26236685 ~ 26237398 (-)
G2217824 NA other upstream 3267040 26268346 ~ 26341495 (-)
LOC118945923 NA coding upstream 74162 23082271 ~ 23082342 (-)
G2213051 NA non-coding downstream 766286 22155089 ~ 22220073 (-)

Expression

LOC110521564(LOC106584326) Expression in all Baseline Samples

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LOC110521564(LOC106584326) Expression in each Bioproject

Bar chart with 21 bars.
LOC110521564(LOC106584326) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network