Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110521588 |
| gene name | LOC106584306 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_050570.1 |
| NCBI id | CM025857.1 |
| chromosome length | 46327593 |
| location | 23895194 ~ 24233242 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: neuroligin-1-like isoform X2 |
| id | name | namespace |
|---|---|---|
| GO:0002040 | sprouting angiogenesis | biological_process |
| GO:0007155 | cell adhesion | biological_process |
| GO:0016020 | membrane | cellular_component |
| id | description |
|---|---|
| K07378 | NLGN; neuroligin |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036968746.1 | False | 8382 | mRNA | 0.46 | 7 | 23895194 | 24233242 |
| XM_021599245.2 | False | 8187 | mRNA | 0.46 | 6 | 23946639 | 24233242 |
| XM_036968744.1 | True | 8247 | mRNA | 0.46 | 7 | 23946639 | 24233242 |
23,720,000
23,760,000
23,800,000
23,840,000
23,880,000
23,920,000
23,960,000
24,000,000
24,040,000
24,080,000
24,120,000
24,160,000
24,200,000
24,240,000
24,280,000
24,320,000
24,360,000
24,400,000
NC_050570.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110521587 | LOC106584307 | coding | upstream | 124449 | 23745350 ~ 23770745 (+) |
| LOC110521584 | LOC106584308 | coding | upstream | 152415 | 23670697 ~ 23743514 (+) |
| LOC110521578 | LOC106584313 | coding | upstream | 288687 | 23510569 ~ 23610545 (+) |
| LOC110521576 | LOC106584315 | coding | upstream | 422800 | 23450130 ~ 23472394 (+) |
| qsox1 | LOC106584316 | coding | upstream | 451431 | 23423134 ~ 23443763 (+) |
| LOC118945828 | NA | coding | downstream | 560147 | 24793389 ~ 24802486 (+) |
| LOC110521590 | LOC106613930 | coding | downstream | 818450 | 25051692 ~ 25068480 (+) |
| LOC110522765 | pik3ca | coding | downstream | 864374 | 25097302 ~ 25108568 (+) |
| LOC110521596 | LOC106584302 | coding | downstream | 887406 | 25120648 ~ 25123578 (+) |
| LOC110521595 | LOC106584300 | coding | downstream | 890466 | 25123708 ~ 25144946 (+) |
| G2214263 | NA | non-coding | upstream | 102683 | 23792207 ~ 23792511 (+) |
| G2213959 | rfc4 | non-coding | upstream | 235804 | 23649043 ~ 23659390 (+) |
| G2213955 | NA | non-coding | upstream | 249558 | 23645428 ~ 23645636 (+) |
| G2213954 | NA | non-coding | upstream | 250107 | 23644620 ~ 23645087 (+) |
| G2214927 | NA | non-coding | downstream | 13855 | 24247097 ~ 24247374 (+) |
| G2214935 | NA | non-coding | downstream | 20284 | 24253526 ~ 24253793 (+) |
| G2214963 | NA | non-coding | downstream | 45768 | 24279010 ~ 24324806 (+) |
| G2215093 | NA | non-coding | downstream | 142393 | 24375635 ~ 24375912 (+) |
| G2215107 | NA | non-coding | downstream | 150216 | 24383458 ~ 24383702 (+) |
| G2213751 | NA | other | upstream | 545977 | 23348999 ~ 23349217 (+) |
| G2212563 | LOC106584318 | other | upstream | 684678 | 23208775 ~ 23210516 (+) |
| G2212455 | LOC106584324 | other | upstream | 843336 | 23050488 ~ 23051858 (+) |
| G2211556 | NA | other | upstream | 2231355 | 21659650 ~ 21663839 (+) |
| G2216024 | LOC106584303 | other | downstream | 797756 | 25030998 ~ 25174051 (+) |
| G2216357 | NA | other | downstream | 1131010 | 25364252 ~ 25373610 (+) |
| LOC110522768 | LOC106584287 | other | downstream | 1334598 | 25566527 ~ 25590680 (+) |
| LOC110521611 | LOC106584283 | other | downstream | 1454849 | 25688091 ~ 25825503 (+) |
| G2217159 | LOC106584278 | other | downstream | 1893812 | 26127054 ~ 26133044 (+) |
