LOC110521595 (LOC106584300)


Basic Information

Item Value
gene id LOC110521595
gene name LOC106584300
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 25123708 ~ 25144946 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599263.2
TACGGGTACCCAAGAGAGACAGTCTTAGCAAATGGAACTTCATTTTTGACATCACTCTGTATTTGTTGTTATTTTCACCAAACTAGAGCATGTTTTAGTTTTATAATTTAATAGAATAGCAGTTCCACCGATCAACTCTAGTTGATAATACTTATTATAAAATGCAGTATCGTAACTAGCTAAGGCTTAATTGGTAAATCAAAATAATCGATTTCATAAAGACAAACGCTTATCATTTCCTCATTCGGCTGCTAATAGACAGCAGACATGTTTGCTGTCCTGAAAGTTCAAACCCTACAGGGTCTAAGAATATTTCAACAGAAATGTATATGGACCAAAGGATCAGTACGGTTTGCCTCAGTTGGGCAAGGCCGGATAGAGAAAGTACTCATTGCCAACAGAGGAGAGATTGCCTGCCGTGTGATGCGAACAGCAAAGAAGATGGGTGTGCGCTCTGTGGCAGTATACAGTGATGCAGACCGTCATTCCATGCATGTGGCCATGGCAGATGAGGCCTATAACATTGGGCCAGCTGCATCCCAGCAGAGTTACTTGTCAATGGAGAAAGTCTTGGAGGTTGCCAAGAGATCTGGATCACATGCTGTCCATCCGGGATATGGCTTCCTGTCAGAGAACACAGAGTTTGCTGAGGCGTGCAAACAGGAGGGTATCATTTTCATTGGTCCTCCATCATCTGCCATCAGAGACATGGGTATCAAAAGTACATCAAAATACATTATGTCAGCTGCGGGTGTTCCTATCATCGAGGGTTACCACGGAGACGACCAATCAGATGAGAAGCTCCAAGCTGAGGCTGTCAGGATTGGCTACCCAGTGATGATAAAGGCTGTGCGTGGCGGGGGTGGTAAAGGAATGCGCATTTCACACACCGCTGAAGATTTCCATGAGCAGCTTGAGTCTGCGAGACGAGAGGCTCGCAAGTCCTTCAACGATGACGTCATGCTAGTGGAGAAATTTGTAGAGGACCCCAGacatgtggaggtccaGGTCTTTGGGGACCAGCATGGAAATGCTGTCTACCTGTTTGAGAGGGACTGCAGCGTGCAGAGAAGGCATCAGAAGATCATTGAGGAAGCACCAGGGCCTGGTATAAGCGAGGAGGTGAGGTGGAAACTGGGAGAGGCAGCGGTGAGAGCAGCCAAAGCCGTCAACTATGTGGGAGCAGGCACTGTGGAGTTCATCATGGATGCACAGCACAACTTCTACTTCATGGAGATGAACACACGTCTGCAGGTGGAGCACCCTGTGTCTGAGATGATCACTGGAACTGACCTGGTGGAGTGGCAGCTCAGGGTGGCTGCAGGCGAGAGGCTGCCCCTCCTGCAGGACGAGATCGAACTGATGGGCCATTCATTTGAGGCCAGGATATACGCTGAGGACCCCAACAATGACTTCCTCCCTGGGGCTGGACCCCTCCTTCATCTGTCTACACCCCCGGCAGACGAATACACACGCATCGAGACGGGCGTCAGGGAAGGAGATGAAGTGTCAGCCCACTATGACCCCATGATCGCTAAACTGGTGGTGTGGGGAGAAGACCGATCTGCTGCTCTGAAGAAGCTCAGATACGGTCTACGCCAGTACAACATTGTAGGACTCAACACCAACATTGACTTCTTGCTGAGTCTGTCTGGGCATCCAGAGTTTGAGGCGGGGAATGTGACCACCAGCTTCATCCCCCAGCACTATGAGCAGCTGTTCCCtaaacccatccctccctccagggCCACACTGTGTCAGGCTGCCCTGGGCCTGCTCCTCAGAGAGAGGGCCAGCACTCAGACCTTCAGAGACAAGTCCAACGATCCCTTCTCTCCTTTTGCCTGCAGTAACGGCCGGAGGGTGAACATCCTATACAGTAGGAATATGACCCTCCAGCTGGGTGAAACTAaAGTGGAAGTAACAGTTACATACAATTCAGATGGGACTTATTCTATGGAGATTGGAGGGGAAATGTTCCAGGTGTCaggggaggtggagacagagggacagacatcATTCCTGCACTGCTCTGTCAACGGGGTGAAGTCTCGGCCCAAACTGGTCATCCTTGATAACACAGTACACCTCTTCTCTATGGAGGGCAGCGCAGAGGTGAGCGTTCCAGTGCCCAAGTTCCTGGCTGGTGTGAGCACAGGAGCACAGGGAGGAGCTGTGGCACCCATGACCGGGACCATTGAGAAGGTGCTGGTGAAGGCAGGTGACACTGTGCAAATGGGAGATGCCTTGATGGTGATGAATGCCATGAAAATGGAGcACACCATCCGAGCACCTAAAGCTGGAGTTATCAAGAAGGTGTTTTTCAAAGAGGGCTCCCAGGCCAACCGACACGCAGCCCTGGTGGAGTTTGAGGAAGCCGCTGAAGAGGAATAATCTCGTGTGACTATCCATGTGTGAACTTTCAGTTACTGTAGAAGTCATAGGAAAGAGGCATTTACTATAGGAGTTGCAAACTGCTGTACCATCACTACAGGTCCATGTGGATAACATTGTACACAGTATGAGATGACAGAAAATTCCCTTTGAGTTGTGGCAAATGTAGATTTAACAATACTGGTATATTTGCTTTGGGTCATTTTATCAGATGGCTGTATGAAAGTAAACATCTGGCTTTTGTACTGTCCTCTGCAAAGTGCTCTTGTAGTCTTTCTCTAAGTAGAACCAAGCTACAGTAACCACTAAACCACTAGCTTTTT
>XM_021599262.2
TACGGGTACCCAAGAGAGACAGTCTTAGCAAATGGAACTTCATTTTTGACATCACTCTGTATTTGTTGTTATTTTCACCAAACTAGAGCATGTTTTAGTTTTATAATTTAATAGAATAGCAGTTCCACCGATCAACTCTAGTTGATAATACTTATTATAAAATGCAGTATCGTAACTAGCTAAGGCTTAATTGGTAAATCAAAATAATCGATTTCATAAAGACAAACGCTTATCATTTCCTCATTCGGCTGCTAATAGACAGCAGACATGTTTGCTGTCCTGAAAGTTCAAACCCTACAGGGTCTAAGAATATTTCAACAGAAATGTATATGGACCAAAGGATCAGTACGGTTTGCCTCAGTTGGGCAAGGCCGGATAGAGAAAGTACTCATTGCCAACAGAGGAGAGATTGCCTGCCGTGTGATGCGAACAGCAAAGAAGATGGGTGTGCGCTCTGTGGCAGTATACAGTGATGCAGACCGTCATTCCATGCATGTGGCCATGGCAGATGAGGCCTATAACATTGGGCCAGCTGCATCCCAGCAGAGTTACTTGTCAATGGAGAAAGTCTTGGAGGTTGCCAAGAGATCTGGATCACATGCTGTCCATCCGGGATATGGCTTCCTGTCAGAGAACACAGAGTTTGCTGAGGCGTGCAAACAGGAGGGTATCATTTTCATTGGTCCTCCATCATCTGCCATCAGAGACATGGGTATCAAAAGTACATCAAAATACATTATGTCAGCTGCGGGTGTTCCTATCATCGAGGGTTACCACGGAGACGACCAATCAGATGAGAAGCTCCAAGCTGAGGCTGTCAGGATTGGCTACCCAGTGATGATAAAGGCTGTGCGTGGCGGGGGTGGTAAAGGAATGCGCATTTCACACACCGCTGAAGATTTCCATGAGCAGCTTGAGTCTGCGAGACGAGAGGCTCGCAAGTCCTTCAACGATGACGTCATGCTAGTGGAGAAATTTGTAGAGGACCCCAGacatgtggaggtccaGGTCTTTGGGGACCAGCATGGAAATGCTGTCTACCTGTTTGAGAGGGACTGCAGCGTGCAGAGAAGGCATCAGAAGATCATTGAGGAAGCACCAGGGCCTGGTATAAGCGAGGAGGTGAGGTGGAAACTGGGAGAGGCAGCGGTGAGAGCAGCCAAAGCCGTCAACTATGTGGGAGCAGGCACTGTGGAGTTCATCATGGATGCACAGCACAACTTCTACTTCATGGAGATGAACACACGTCTGCAGGTGGAGCACCCTGTGTCTGAGATGATCACTGGAACTGACCTGGTGGAGTGGCAGCTCAGGGTGGCTGCAGGCGAGAGGCTGCCCCTCCTGCAGGACGAGATCGAACTGATGGGCCATTCATTTGAGGCCAGGATATACGCTGAGGACCCCAACAATGACTTCCTCCCTGGGGCTGGACCCCTCCTTCATCTGTCTACACCCCCGGCAGACGAATACACACGCATCGAGACGGGCGTCAGGGAAGGAGATGAAGTGTCAGCCCACTATGACCCCATGATCGCTAAACTGGTGGTGTGGGGAGAAGACCGATCTGCTGCTCTGAAGAAGCTCAGATACGGTCTACGCCAGTACAACATTGTAGGACTCAACACCAACATTGACTTCTTGCTGAGTCTGTCTGGGCATCCAGAGTTTGAGGCGGGGAATGTGACCACCAGCTTCATCCCCCAGCACTATGAGCAGCTGTTCCCtaaacccatccctccctccagggCCACACTGTGTCAGGCTGCCCTGGGCCTGCTCCTCAGAGAGAGGGCCAGCACTCAGACCTTCAGAGACAAGTCCAACGATCCCTTCTCTCCTTTTGCCTGCAGTAACGGCCGGAGGGTGAACATCCTATACAGTAGGAATATGACCCTCCAGCTGGGTGAAACTAGTGAGTCCGAACCTCCTTCACCAGaAGTGGAAGTAACAGTTACATACAATTCAGATGGGACTTATTCTATGGAGATTGGAGGGGAAATGTTCCAGGTGTCaggggaggtggagacagagggacagacatcATTCCTGCACTGCTCTGTCAACGGGGTGAAGTCTCGGCCCAAACTGGTCATCCTTGATAACACAGTACACCTCTTCTCTATGGAGGGCAGCGCAGAGGTGAGCGTTCCAGTGCCCAAGTTCCTGGCTGGTGTGAGCACAGGAGCACAGGGAGGAGCTGTGGCACCCATGACCGGGACCATTGAGAAGGTGCTGGTGAAGGCAGGTGACACTGTGCAAATGGGAGATGCCTTGATGGTGATGAATGCCATGAAAATGGAGcACACCATCCGAGCACCTAAAGCTGGAGTTATCAAGAAGGTGTTTTTCAAAGAGGGCTCCCAGGCCAACCGACACGCAGCCCTGGTGGAGTTTGAGGAAGCCGCTGAAGAGGAATAATCTCGTGTGACTATCCATGTGTGAACTTTCAGTTACTGTAGAAGTCATAGGAAAGAGGCATTTACTATAGGAGTTGCAAACTGCTGTACCATCACTACAGGTCCATGTGGATAACATTGTACACAGTATGAGATGACAGAAAATTCCCTTTGAGTTGTGGCAAATGTAGATTTAACAATACTGGTATATTTGCTTTGGGTCATTTTATCAGATGGCTGTATGAAAGTAAACATCTGGCTTTTGTACTGTCCTCTGCAAAGTGCTCTTGTAGTCTTTCTCTAAGTAGAACCAAGCTACAGTAACCACTAAACCACTAGCTTTTTGGTGGGTGTTCTTGTTCTTCCTCTCCttcaaacttgttttttttttcttctagctTCACTATAGCCAGGTCCCATATGCTCTTGTCAAACCAAACATGTTTTATGATAAGGAGTTTGAATGATAGCACAAATGGGTCTAGCACTCAGGCTACATCTCATGATTTCAGATTCACTCCAGGCTGTGAAATTCAAATAAGGGCTATTTGCTAACAGCCTCACCTCACAGGCCTACCACGTTGTGTTTAATGACCAGAATCTGGTTACTTTACAGTCCAATAAGTAATACCAGGGCAAAGATGGCCTGCCATCTGAATTCATATAACACGGTCATCTCTCATCATGTGACATAGATAGACCATCAAATAACCAAGAGAGAAGGGCCAGAGCACATGTTTTTATAGGTGTTGTAATATGTCAGAGTTAGTGTTGAATTCCCGCAAACACACACTCCTGTGGTGAGTTATGTCTACTAAACTGTGCTGTCATCCATTAGTCACGTTGATTTGTAATTAGCTGAGGGTTGTCAAATTGTTTTTCTAAAAGATCATTTCAGATAAATTCTCTAAAATGTC

Function

NR:

description
methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial-like isoform X1

GO: NA

KEGG:

id description
K01968 E6.4.1.4A; 3-methylcrotonyl-CoA carboxylase alpha subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599263.2 False 2717 mRNA 0.49 19 25123708 25144374
XM_021599262.2 True 3313 mRNA 0.48 19 25123708 25144946

Neighbor

gene id symbol gene type direction distance location
LOC110521596 LOC106584302 coding upstream 130 25120648 ~ 25123578 (+)
LOC110522765 pik3ca coding upstream 15140 25097302 ~ 25108568 (+)
LOC110521590 LOC106613930 coding upstream 55228 25051692 ~ 25068480 (+)
LOC118945828 NA coding upstream 321222 24793389 ~ 24802486 (+)
LOC110521588 LOC106584306 coding upstream 890466 23895194 ~ 24233242 (+)
LOC110522766 NA coding downstream 63438 25208384 ~ 25219290 (+)
LOC110521597 LOC106584301 coding downstream 101443 25246389 ~ 25254013 (+)
LOC110522767 LOC106584297 coding downstream 124109 25269055 ~ 25271075 (+)
LOC110521600 NA coding downstream 152849 25297795 ~ 25299938 (+)
LOC110521603 LOC106584291 coding downstream 211203 25356149 ~ 25382798 (+)
G2216022 NA non-coding upstream 95823 25027589 ~ 25027885 (+)
G2216018 LOC106571146 non-coding upstream 100224 25023255 ~ 25023484 (+)
G2215983 NA non-coding upstream 123688 24999797 ~ 25000020 (+)
G2215975 NA non-coding upstream 131127 24991837 ~ 24992581 (+)
G2216096 NA non-coding downstream 8146 25153092 ~ 25153473 (+)
G2216314 LOC106584296 non-coding downstream 133788 25278734 ~ 25280330 (+)
G2216336 tgm1 non-coding downstream 169583 25314529 ~ 25377233 (+)
G2216348 rabggta non-coding downstream 194883 25339829 ~ 25341601 (+)
G2216355 NA non-coding downstream 205899 25350845 ~ 25355952 (+)
G2216024 LOC106584303 other upstream 10110 25030998 ~ 25174051 (+)
LOC110521578 LOC106584313 other upstream 1538128 23510569 ~ 23610545 (+)
G2213751 NA other upstream 1774491 23348999 ~ 23349217 (+)
G2212563 LOC106584318 other upstream 1913192 23208775 ~ 23210516 (+)
G2212455 LOC106584324 other upstream 2071850 23050488 ~ 23051858 (+)
G2216357 NA other downstream 219306 25364252 ~ 25373610 (+)
LOC110522768 LOC106584287 other downstream 422894 25566527 ~ 25590680 (+)
LOC110521611 LOC106584283 other downstream 543145 25688091 ~ 25825503 (+)
G2217159 LOC106584278 other downstream 982108 26127054 ~ 26133044 (+)
G2217442 NA other downstream 1462577 26607523 ~ 26607943 (+)

Expression


Co-expression Network