LOC110521597 (LOC106584301)


Basic Information

Item Value
gene id LOC110521597
gene name LOC106584301
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 25246389 ~ 25254013 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599265.2
AATCACTGCATCCTCCTCCACGAGAGCAGACACGGAGGAATGTAGTTTTACAGCTGGGGAAATTGTTATTCAGAAGGAAGCTTTTATTCCAAAGACATCTTTCGTATTCGTGTTTCTGCCTCTCTTAATAACAAGGTTGGAAGATATCTATGGAAATCACATTGATTCAGAGTTTCAAAACTAAGTCAAGTGTAATGAGTTTATTGTAGGAGTAACTATGGGAGTTTATATCCCGGAATCTAATACAAGCTCCAACTTCACTCCCGGCAGCGACTCGGCCAATGTCCACGAAGCTGGAGCGACTCTCCCGGGCTATATGAAGGTGATCCTGGCCGTGCTTATGATAACTCTGGTAGTCGTGGTTGTGGCTGGTAACGCACTTGTTATCCTGGCTTTCATTGTTGACAAGAGCCTAAGAAATCAAAGCAACTACTTCTTCCTCAACCTTGCTCTTTCAGATTTTCTTGTTGGTGCCTTCTGCATCCCTGTATACATCCCCTACATCCTGACAGGCCGCTGGGTGCTGGGCAGAACTCTCTGTAAGCTGTGGCTCCTCATGGACTACCTGCTGTGTACTGCCTCTGTCTTCAACATCGTCCTCATCAGCTACGACCGATTCCTCTCCGTCACCAGAGCAGTGAAATACAGAGCCCAGCGGAGCATGACCCACCATGCTGTGGTAAAGATAGTGACTGTGTGGGTGTTAGCCTTCCTTCTCTATGGCCCTGCTATCATCTTCTGGGAGCTGGTCGTGGGAAAAAGCATCGTCCTTGCCGATCAGTGTTTCGCTGAGTTCTACTGCACCTGGTACTTCCTACTCAGTGCGTCTACGATTGAGTTCTTCACCCCATTTATCTCTGTGGCCTTCTTCAACCTGAGCATCTACCTGAACATCCAGCGGAGGAACAAGAGCAGGGCTATCCGTAAGGAAGACACCAAGGCACGCAGTGACAGGGGCAGTCTCAGGGACGGGGGTGCTGCCTTGACTGTGTTTTTGACTTGCAAGGCATCATCGAGCAAGCCAGCTGCTGTTTCAGCTGTGATAGAGAAGGACGAGGAGCTGTCGCCGTCCTCCAATGGGGAGCCTTGTAGCGGACACACCTTCATGCAGAGCAAGAAGTGCCTCACTTGCAGGATCACTTCCAGGCCCCTTCAATCCCAGTCCCCCACCGGGCCCCCCAGCAGGAGCTCACAGGGCTCCCGCCTCTCCCGCGACAAGAAGATTGCCAAGTCGCTGGCCATTATAGTGTGCATTTTTGGGATCTGCTGGGCACCATACACCCTATTGATGATAATCCGGGCAGCTTGTAGTGGGCGATGTGTGGAGCAGTACTGGTACGAGATTACTTTTTGGCTCTTGTGGCTGAACTCTGGTATTAACCCTTTCCTGTACCCTCTCTGCCACAGCAGCTTCCGAAGGGCTTTTGCTAAGATATTGTGCCCCAACCGGCAGTCTGTCCAACCTCACATTGAGACCCAGTCTTGCTAGTAAGACATTGCATAGCTGGATGAGAGTCATACTGGAGTGAGAAGACTACTGCAAATGGATGTGGATTGTCAAACAAAAGTTCAGTCATGAATAGGACTAAGAAACCCTTTTTTAGTTGCTCACTATAAAAGGGTATAAAACATTATGAAAAAAGTGATTACTGATAACCCTATGTTTTGTTTGAGATACATCAAATCCTTCTTTCCTACTTTTTCCACTTCACTTCAGGCTTCTTTTCATTGAAAAGTTTCAAGTTCTTACTTAGAAAAGCCTTCTTCCACTAGAATGAAAGATATGCATCTTCTAGTGATCTATTGAGAGGACAAGCACCTGTCAGTCACAAAGTGAGTGATGACAGGGCAACTGCTGGTTTGTCAGTCTGCCGTCTATCCCACCTCTCAATACCTGTGTTAATTTTGTGTGCTGTGGTTATCACGGAGGAGGGAGAGCATGATGCTTCTTTATCTCCTGTGAGCGAATTTACACGTCCCATGTAATTTAAGTGGTAATGATGAGTTTAAATCCACTTAATCAttgttttgtgtttatttattttcttttgcGTGTTTCAACTTTCATATATCCAGACATGGAGTCtatttaggctatttactgtgctTTGATTGACGACCGAACAACAAGTGTTGACTAGTTTATAAAGCTGTCGAACTGACTGAATAAAGTCAATCTCCAATATTCCTTTGCTATTCATAAATCATACAATGTAGTTATAAGTCCATTGTATTGCACCAAGACAAATTAAAACAAAGATCTTGTTTGTATTtttggaaggtggcccatgtattCCCCCTTCACACAGGTGGTGACCCTTGTGACCTAAATAATTATTGTCCTAGTTATAAACTTTCTTGCCTAGATAAAATATTAGAATCTTTGATAAATTCTCAACTAAGATCTTTCTTATCTTTGAAATGTATTCTAAATCAGTTGGGTTTTAGACCAGGTCATAGCACAATCTCTACTGCATACCTAGTtctagttataaatgatgtggTTAACTGCATGGATAAAAGGCAACATTGTGCTGCCCTCTTCATTGACCTGCCAAAGGCTTTTCATACTGTTGATCACTCACTGCTAATTCATGGCTTTCCTCAATTGGCCAAGACCGGGCTGCATGTAACTGGTTAAGATATTATTTGACAGATAGAACTCAATGTGTATTTACTGATGGTGTTAAATCAGGTTTCCTGGAAATTACGAAAGGTGTCCCGCAGGGGTCGATTCTGGGTCCTGTAAATTTTACTGtttacattaacaatatctaaTTGTCTGTAAAAAATTCAGATGATACTGTTGGGTATGCTATTGCCACCACGTTTGAgcaggctctatctgaactacagtctgCATTCATTGTATTACAGAAAAACTTTATTGACATGAAATGAGTATTGAATGCAGGGTAAAACTAAGTATGTGTTGTTCTCTAGAGAGCATAAAAATAACTCTGATGATTTAAGCATATGTACTTTGGATAGTGTCCATATTGGTTGTGTCCCTGCTTacaaatatctgggcatctggatagatgaaaagctgtcttttaaaaagcatattgGTGAGTTAGTTAAGAAACTGAGAATGAAAATTGGCTTCTTCTATAGAAATAGATCCTGCCTCTCACTCAATAGTAGAGAGCAGATTATGCAGTCGACGTTCCTATCGGTCCTACTGTAGACTATGGCGACGTCATCTATATGAACACATCTGCCACTTCCTTAAAGCCGTTAGAGGCAGTTTATCGTGCACTTCGCTTTATTACCGTTGACAATTTTAGTTCTCATTACTGTATTCGCTACCAGAAAGCTGGTtggccctctttgatgtcacGTAGGTTGATACATTGCTATCTTTTCATTTATAAAGTACTTTTACAAAAAGtcccactgtacctaacatcTTTACTAAACTTTAGACATACACGTTACCACACCTGGTCTCAGGGATGGTTAACTCTGGAAATTCCTTTGGTCTCTACTGAGTTAGAtaaatcagcttttagttttcttgcaccttatttgtggaacaatcttcaaaaATGTTCTTAAATttgatgttttggtgcctctaaggcaattcagaaagctgattgaggaccttattattGATGAATGTGTTGGTTTTTTATGACCGTGTTTTTCTTTCTGCTGCTTTGTAtttatattgatgtgtgtattttctgtcatTTCTGTAATTCAGGCTTGTCTGTAAAAGAGACCATGGTCTCAGTATGACACCctgataaaggttaaatataaaataatacatgtGTAGGTTTCGAAGCCCATGTCCAAGACTTGCCAGTGACTGGTAAAGTGACTTGTCAGTGTAACCTAGTGTTATTAAAGATGTTGATATAGGCCGACTGATTTGATTAATTAAAGTGCCGAAAATGGAGTAGTAAACTGCTGTTTTCTGTGTAGCAAAGCccatgtttaacacctgcttCATTCTTCAAGCATACCTGTATTCATTGTCGCCTGTCTTTGTATAAAATTGGGGGTGCACAATCTGATGGGGGGTCTGAGGGTCCTCCCCCTGAAaatgttttgcagttttaaaacCATTTTCCTCCAATTCTATATTGTTTCTCAACAGGGAATCAATGTTTTCTTGTTAGAACACAAACATTTTCTTCGATTTTTGCCACAATAAACTAAAGAAAGAGTAGACTAGATTTGTATTTTTCTGACTAGATCACTAATCTAAAGCCTTCCCTTTAAAGTCAGGTATGAAACCCAACCAACTCTGTGACTCACAAACATCCTGCCTAACTCTCCTGACAGTCCCACCCACAGTTATTGATTGACAGGCCAaactgttaaagggatagttcacccaaatcacAAAATGAAACATCGATTTCCTTAACCTTTGCATCCACAGCCACAGAGCCAATAAAATACATAATTTGAAGAACAAACATAATTGTGGAAATTCATATCTTGCAGTAAAACTGTAAATATGAATTtcatctcaagagaagacagtttTAATGTTAAAAAATATAATTGTCCTGATCATATAAGCCTAGGCCAAGACAATATCAAAAACAACTAACAACACACTGAATTCATACATACATTAAGGTCTTTCTAATCTACTCAATACCATAACTAATTTGACCAATCTGGGAGGTAAAGTTGTTAAAGTATTCAATTATTTAGCTGTGTATTTCAGATGGAATCAAGGCATTAGAATGTACCAGAGGCCACCAAAATAGAGCTAATTCTGCTATTTTCTTCCCCTGTTTGACTGGCCTCTTTTACTTGTCTGGCAACTCCATGGACTTAGGGAAAACACTGCTATCTATGTGCCATGTCTGAAACTTTGACTTTTTGTAGGGTAAGAACCAAATGCTTGTATTTATATATCAAAGTGAATTAATGTAATCTACGTCTACTTGTTGtagatatatttttttagtttgagtttgagttttgTTGCTACTCATAAGGATTTTGGTATGAATAGCAGAGGTGCAGATGTTCCTAGGGCTGGCAGGGAATCTCAACTCTTACTAGTGCTTTATGTCTGACAATTATAGATCTGAATGGTTCTGGTGTACTTGTAAATGTTCTATGTAGGAAAAGATGTTCACTGTTATTTTCAGTGAAATGTGAAAGAATAGTAGATAGTGTAATACCGAATCAGGTATTCCTTGGTGTGATTTCTACATCTACAGCAATTTGTTTGCAACCTATAAAACATGTGTGATTATTTACATACCtacttggacacacctactcattccaggttttttctttatttttagaataata

Function

NR:

description
histamine H3 receptor-like

GO: NA

KEGG:

id description
K04151 HRH3; histamine receptor H3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599265.2 True 5295 mRNA 0.40 3 25246389 25254013

Neighbor

gene id symbol gene type direction distance location
LOC110522766 NA coding upstream 27099 25208384 ~ 25219290 (+)
LOC110521595 LOC106584300 coding upstream 101443 25123708 ~ 25144946 (+)
LOC110521596 LOC106584302 coding upstream 122811 25120648 ~ 25123578 (+)
LOC110522765 pik3ca coding upstream 137821 25097302 ~ 25108568 (+)
LOC110521590 LOC106613930 coding upstream 177909 25051692 ~ 25068480 (+)
LOC110522767 LOC106584297 coding downstream 15042 25269055 ~ 25271075 (+)
LOC110521600 NA coding downstream 43782 25297795 ~ 25299938 (+)
LOC110521603 LOC106584291 coding downstream 102136 25356149 ~ 25382798 (+)
LOC110521605 NA coding downstream 158300 25412311 ~ 25426874 (+)
rpf1 rpf1 coding downstream 277636 25531649 ~ 25540983 (+)
G2216088 NA non-coding upstream 58541 25133633 ~ 25187848 (+)
G2216024 LOC106584303 non-coding upstream 72338 25030998 ~ 25174051 (+)
G2216096 NA non-coding upstream 92916 25153092 ~ 25153473 (+)
G2216073 NA non-coding upstream 105348 25114519 ~ 25141041 (+)
G2216314 LOC106584296 non-coding downstream 24721 25278734 ~ 25280330 (+)
G2216336 tgm1 non-coding downstream 60516 25314529 ~ 25377233 (+)
G2216348 rabggta non-coding downstream 85816 25339829 ~ 25341601 (+)
G2216355 NA non-coding downstream 96832 25350845 ~ 25355952 (+)
LOC110521578 LOC106584313 other upstream 1660809 23510569 ~ 23610545 (+)
G2213751 NA other upstream 1897172 23348999 ~ 23349217 (+)
G2212563 LOC106584318 other upstream 2035873 23208775 ~ 23210516 (+)
G2212455 LOC106584324 other upstream 2194531 23050488 ~ 23051858 (+)
G2216357 NA other downstream 110239 25364252 ~ 25373610 (+)
LOC110522768 LOC106584287 other downstream 313827 25566527 ~ 25590680 (+)
LOC110521611 LOC106584283 other downstream 434078 25688091 ~ 25825503 (+)
G2217159 LOC106584278 other downstream 873041 26127054 ~ 26133044 (+)
G2217442 NA other downstream 1353510 26607523 ~ 26607943 (+)

Expression


Co-expression Network