rpf1 (rpf1)


Basic Information

Item Value
gene id rpf1
gene name rpf1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 25531649 ~ 25540983 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001160528.2
AGAACACGTGAAAGAATATACATTTAGCTGACAACATGGACGTCGTAGAAGAGCATGATATACAGGATAAACCCACGAAAAAGAAGACTAAGAAGCCAAAGAAACAGCCAAAGCCTCCACATGAAAATGGTAACGATAGCATGATTGAGAAAACAGAGCCAGAACATGTGGATGCGCCAGCAGAATTCTCGTTTCCCCCCACATTCAGTGTgtctgaaataaaaaataaacaacgcAGACACCTCATGTTCATGAAGCTGAAGCAGGAGAAACGGAAGcaaaaggtggcaatgaagaagaaaaagaaaaaagagagggaTGCTCTAGGTGACAAGGCTCCCCCAAAGGAAGTTCCAAAGACGATAGAAAACCAGAGGGTATACGACGAAACTACTGTTAACCCTGAAGATGAAGAGGTGGCCTTTGATGAGGGAACTGATGAGTTTTCGGCCTATTTCAACCGGCTGACCAACCCCAAAGTCCTCATTACCACATCTGACAGACCTAGAGGGAGGACAGTGAGGTTCTGCAACCAGCTGGCCACAGTCATCCCCGACGCACACGTGTACTACAGAAGAGGCTTGGCACTAAAGAAGGTCATTCCCCAGTGTATAGCCAGAGGTTTCACATACCTCATGGTCATCAATGAAGATCGTAAGGTGCCCAATGGTATGGTTCTCTGCCACCTCCCTGATGGGCCTACTGCACACTTCAAAGTCAGCAGTGTCCGACTGCGGAAGGAGATGAAGAGGCGAGGGAAGGACCCGACAGAACACTCCCCAGAGGTGATCCTCAACAATTTCACCACCCGCCTGGGCCACAGCATGGGACGACTCTTTGCTGCCCTTTTCCCTCACGACCCCCAGTTTGTGGGACGCCAAGTCGCCACTTTCCACAACCAGAGAGACTTCATATTTTTCAGATTCCACAGGTACATCTTTAAGAACGAGCAGAGAGTCGGCATTCAAGAGCTGGGACCACGCTTCACTCTGAAACTCCGATCATTACAGAAGGGGACCTTTGACTCCAAGTTTGGGGAATATGAGTGGGTTCTCAAGCGACATGAAAATGACGTCTGCAGAAGGAGGTTCAACCTTTGAGTGAAACATATGGACCTTCCCACGACATCATCTACATGAGACATTTTCTACAATGCATACCAGTTTGTCAGATTGTGTCCAGGCAAAAATTGCAGTCGTGCCTTTGGCCATGCAAGTCTCTTAAAATGTGGCAACATGTCGTAGGTTGTCATTTTAATTTGATGACATCTTGTTCACATTTGATAGACAGTCATTGTGAAAGAGCAAAGCAGTCTGATTTATAGATTCTGGCTTTGTTAACACTTGCGTTATCTTTGTGCTTTTAGACAAAACAATCTGTACCTGTAAATGgtatttcatattttcaagtaAAACATGTACGTACTC

Function

symbol description
rpf1 Predicted to enable RNA binding activity. Predicted to be involved in maturation of 5.8S rRNA and maturation of LSU-rRNA. Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in nucleus. Predicted to be part of preribosome, large subunit precursor. Predicted to be active in nucleolus. Orthologous to human RPF1 (ribosome production factor 1 homolog).

NR:

description
ribosome production factor 1

GO: NA

KEGG:

id description
K14846 RPF1; ribosome production factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001160528.2 True 1427 mRNA 0.46 9 25531649 25540983

Neighbor

gene id symbol gene type direction distance location
LOC110521605 NA coding upstream 107471 25412311 ~ 25426874 (+)
LOC110521603 LOC106584291 coding upstream 148851 25356149 ~ 25382798 (+)
LOC110521600 NA coding upstream 231711 25297795 ~ 25299938 (+)
LOC110522767 LOC106584297 coding upstream 260574 25269055 ~ 25271075 (+)
LOC110521597 LOC106584301 coding upstream 277636 25246389 ~ 25254013 (+)
LOC110522768 LOC106584287 coding downstream 25544 25566527 ~ 25590680 (+)
LOC110521607 LOC106584286 coding downstream 95599 25636582 ~ 25653905 (+)
LOC110521610 NA coding downstream 141317 25682300 ~ 25687956 (+)
LOC110521611 LOC106584283 coding downstream 148459 25688091 ~ 25825503 (+)
trnaa-agc-10 NA coding downstream 243112 25784095 ~ 25784167 (+)
G2216336 tgm1 non-coding upstream 154416 25314529 ~ 25377233 (+)
G2216355 NA non-coding upstream 175697 25350845 ~ 25355952 (+)
G2216348 rabggta non-coding upstream 190048 25339829 ~ 25341601 (+)
G2216314 LOC106584296 non-coding upstream 251319 25278734 ~ 25280330 (+)
G2217031 NA non-coding downstream 358241 25899224 ~ 25899854 (+)
G2217047 NA non-coding downstream 375993 25916976 ~ 25917700 (+)
LOC110521625 mettl13 non-coding downstream 772497 26312180 ~ 26314731 (+)
G2217277 NA non-coding downstream 777158 26318141 ~ 26324770 (+)
G2216357 NA other upstream 158039 25364252 ~ 25373610 (+)
G2216024 LOC106584303 other upstream 418051 25030998 ~ 25174051 (+)
LOC110521578 LOC106584313 other upstream 1946069 23510569 ~ 23610545 (+)
G2213751 NA other upstream 2182432 23348999 ~ 23349217 (+)
G2212563 LOC106584318 other upstream 2321133 23208775 ~ 23210516 (+)
G2217159 LOC106584278 other downstream 586071 26127054 ~ 26133044 (+)
G2217442 NA other downstream 1066540 26607523 ~ 26607943 (+)
LOC110521633 LOC106584207 other downstream 1181002 26695809 ~ 26795605 (+)

Expression


Co-expression Network