LOC110521610


Basic Information

Item Value
gene id LOC110521610
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 25682300 ~ 25687956 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473177.2
aataaataaatagatataATGTCCAAAGTTAAAATAGTCGCCAATGAGACCTGTTATCCAGATACAcacaggaggaggtagagaacgTCTGGTGGTggtaatttgtaaaaaataaaaaataacagacACCTCCAGCTAAGGACAGGTTTAACTAGCCAGCAACGTTACGTTCGCGATCGTGGTGGATCAAATTTCATCAGGGGAAGTTGCAGATAATCTGAAGATGGCCTACTGCTTCATGACGGCCTACAGCAGTAGTGGTAAGAAGTCTGTGGACTCGTGTCAAAACGTGGGTCTCTTCACTGACGTTGGTTGAGCCATGAAGGCCGGCCCTGACTCAGGGGGCAAAAGGTTGAAGGATTCACTAATGTGCGTGTTTTAGATttagGGGACCAACTTAATATTTTTGCATCCAATGAGATTGTTCCTCTCGACATGGAGAAAGGACAGATTCTCAGTCCAACACATCTATCTGCCTGAACATTGACAACAACTTGACTTGATTAAAATGAGTT
>XR_002473176.2
TTATTTACAGTATGCTAGGAATATACAGGGCGCTTTCGAGGATAAATGTTGTCTAGTCCCTTTCAAAGGTTGTTGCATTATGGAGATACAAATTGTCCGACTGCGCCTGTAGTATATGGAGCTATACACCTTTAATGTTGTTGTGATCAAATGTCATTCGTTTTTTTTATGAAGTCGCTTTCAAGTCActggtcatggctagaagggatccagcttttgtaAAATAACGTCAAAAGGGGAAGTTGCAGATAATCTGAAGATGGCCTACTGCTTCATGACGGCCTACAGCAGTAGTGGTAAGAAGTCTGTGGACTCGTGTCAAAACGTGGGTCTCTTCACTGACGTTGGTTGAGCCATGAAGGCCGGCCCTGACTCAGGGGGCAAAAGGTTGAAGGATTCACTAATGTGCGTGTTTTAGATttagGGGACCAACTTAATATTTTTGCATCCAATGAGATTGTTCCTCTCGACATGGAGAAAGGACAGATTCTCAGTCCAACACATCTATCTGCCTGAACATTGACAACAACTTGACTTGATTAAAATGAGTT
>TU2535364
GCTAAGGACAGGTTTAACTAGCCAGCAACGTTACGTTCGCGATCGTGGTGGATCAAATTTCATCAGGGGAAGTTGCAGATAATCTGAAGATGGCCTACTGCTTCATGACGGCCTACAGCAGTAGTGGTAAGAAGTCTGTGGACTCGTGTCAAAACGTGGGTCTCTTCACTGACGTTGGTTGAGCCATGAAGGCCGGCCCTGACTCAGGGGGCAAAAGGTTGAAGGATTCACTAATGTGCGTGTTTTAGATttaggtatgtcattttaggcgggaattgaaaaaaagggtccaatCCTTTGTGTGTGGATGATTTATATGGGGCTCTGTAAAATATAACATGTTTTTTCTCTATAGGGGACCAACTTAATATTTTTGCATCCAATGAGATTGTTCCTCTCGACATGGAGAAAGGACAGATTCTCAGTCCAACACATCTATCTGCCTGAACATTGACAACAACTTGA

Function

NR:

description
cytochrome c oxidase assembly factor 7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473177.2 False 515 mRNA 0.43 3 25682300 25687956
XR_002473176.2 False 551 mRNA 0.42 3 25683082 25687956
TU2535364 True 465 lncRNA 0.44 2 25682434 25687939

Neighbor

gene id symbol gene type direction distance location
LOC110521607 LOC106584286 coding upstream 28395 25636582 ~ 25653905 (+)
LOC110522768 LOC106584287 coding upstream 91620 25566527 ~ 25590680 (+)
rpf1 rpf1 coding upstream 141317 25531649 ~ 25540983 (+)
LOC110521605 NA coding upstream 258122 25412311 ~ 25426874 (+)
LOC110521603 LOC106584291 coding upstream 299502 25356149 ~ 25382798 (+)
LOC110521611 LOC106584283 coding downstream 1486 25688091 ~ 25825503 (+)
trnaa-agc-10 NA coding downstream 96139 25784095 ~ 25784167 (+)
LOC110521613 LOC106584281 coding downstream 144332 25832288 ~ 25854360 (+)
LOC110521618 LOC106584277 coding downstream 456193 26144149 ~ 26149802 (+)
si:dkey-239i20.4 LOC106584276 coding downstream 467929 26155885 ~ 26170182 (+)
G2216336 tgm1 non-coding upstream 305067 25314529 ~ 25377233 (+)
G2216355 NA non-coding upstream 326348 25350845 ~ 25355952 (+)
G2216348 rabggta non-coding upstream 340699 25339829 ~ 25341601 (+)
G2216314 LOC106584296 non-coding upstream 401970 25278734 ~ 25280330 (+)
G2217031 NA non-coding downstream 211268 25899224 ~ 25899854 (+)
G2217047 NA non-coding downstream 229020 25916976 ~ 25917700 (+)
LOC110521625 mettl13 non-coding downstream 625524 26312180 ~ 26314731 (+)
G2217277 NA non-coding downstream 630185 26318141 ~ 26324770 (+)
G2217304 NA non-coding downstream 685845 26373801 ~ 26398614 (+)
G2216357 NA other upstream 308690 25364252 ~ 25373610 (+)
G2216024 LOC106584303 other upstream 568702 25030998 ~ 25174051 (+)
LOC110521578 LOC106584313 other upstream 2096720 23510569 ~ 23610545 (+)
G2213751 NA other upstream 2333083 23348999 ~ 23349217 (+)
G2217159 LOC106584278 other downstream 439098 26127054 ~ 26133044 (+)
G2217442 NA other downstream 919567 26607523 ~ 26607943 (+)
LOC110521633 LOC106584207 other downstream 1034029 26695809 ~ 26795605 (+)
G2218483 NA other downstream 1537418 27225374 ~ 27226305 (+)

Expression


Co-expression Network