LOC110521618 (LOC106584277)


Basic Information

Item Value
gene id LOC110521618
gene name LOC106584277
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 26144149 ~ 26149802 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599299.2
catagggcggtgcagaATTGGCTCAGCGACGTcccggttaggggagggtttgactgtggtaggccgtcattgtaaataataatttgctaTCATCCCGCACAGTAGGTGGCAGGATGTATATTAAATTGTGCGATCGAGAATATACCatagaaaaataaaaaagaagaagaagaaagaagacgaagaaagaagacgaagaagaagatgaagaagatgAAGAAAACAAAGATGGCAATTCAGGAAACTGTTAGCGGACGTTAGAGAAATTGTCACCTGTAACTCGATGAGTTGAGCGGCACAAAAACCTTTATTTTGATAAACGTCCCCTTCGATTTATTAACACCTGATTTTAATAACCAGAAACGAAACAAAATGCCTTCTCCTAAAACCAAAAACAGTGCAAATCGCAGCGCAGGTGGAAGCGCAGGTCTCAGTGGCAGCACCAACGGCAACGGACGCTACGAGTTCATGTCGCTGAACCGAACCCCTCCACCCACTCTCCTCCAACGGCAGGGTTCCGACCCAACCGCTGCAGCCAGACTGCGGGCATCTGAGAGCCCTACCCGGCGAAGGGGCTCCgggtcctccacctcctccaacaCAGGCATGCCCGAAGAGGATTGTATGCGGCTCAACCCTTCATTTATCGGGATAGCCCTCAGCTCCCTCCTCGCTATAGACCTGTGGCTTTCCAAGCGGCTGGGGGTGTGTGCCTGTGAAGATTCCTCCTGGGGCAGCATTAGACCATTGATGAAACTGATAGAGATTTCTGGACATGGAATACCATGGCTGGTCGGGACAGCCTACGGCCTGTACAAGGCTGACAGTGCAGCAGGACAGGAGGTTATGCTAAACCTCTTCATGGctCTCGTTATAGACCTGATCCTGGTTGGCATCGTGAAAGCTGTCGTCCGTCGGCGCCGCCCGTCCCACAACCGCATGGACATGTTCGCCACCTTCTCCGTGGACCGCTTCTCCTTCCCCTCGGGGCACGCCACCCGCGCAGCCATGTGTGCCCGCTTCTTGCTGGCCCACCTGGTCCTGGCCGCACCCCTCAGGGTGCTGGTGTTcttgtggtctggtctggtggggCTGAGCCGGGTGCTGCTGGGCAGACACAACGTGACCGACGTGCTGTTTGGCTTCCTAATGGGCTACTGGCAGTACAACCTGGTGGAAATGCTCTGGGTGTCATCACTGGGCCTTCAGGGGCTGCTGGGACTCATCCAGgggtgaggatgaggaggaggagtggatatTGAGGAGGGTTAAAGAGGGTGTGGTTGGTGGGAGACCCTGTCTCAATATGTTTGAAACATTGACTGATCCTGCCCCATACTGACACTGTGGTAACTCATCATATCAAGACTAACAACGGCAACAACAATGGCTGCCACCCACTAATCATCCATCCACATGGAACTGCAATCAGAAGCACCTACAGTAGGAGCAGGATGCTCCTCTACACTGCATCACAGCACTGCTGCAAAGACCTGGAACACTTTCCACTCTACTGTAATTCGCTGttgaaaaaaaaagtgtgtgtggaatattaatgtggtgtaataaGCCGGGGGGGTAGTGTTACCCCCAATACAGTCTTCTGTTCTTCTTCCAGCTTTGGAGGTTTGGGGCTCTGCagtgatatgagagagagagagagacgtgttcTTTTAGAGGGGAAAATGACAGCAATAGATTAAAACTTAAATTGATTATGGTGTCTGCGGGTCGCTCTGAAAAGAGCATATTTTATGGAGGATTAATTTTGTATTGACCTATTTTAAAATGTTAAGGTGTGTAAGGATGAAAATTGAATGGTATGTCTTTTTTATTTCCCACTGtgaaatatacactgaacaaaaatataaactcaacaatttcagcgattttactgagttacagttcatataaggaagttagtcaattgaaataaagtcattaggccctaatctatggatttcacatgactaggcaagggcgcagccatgggtgggcctgggagggcatatgcCAGGGTTCCTTAACTGGCGGCAGGCGGACACATTTTATCCCCTAAGTTTTCTGAGCAAATTTTTTTTGAATTTGCATGGTTGGATACAAAAGACTGTGTAAAATAAAAAGGAAATCAGccccaagtgattttaattgaagaaatttgttcccaagtattcccacgcataatagagagacgtgATGTTATACAAATGTGAGCCAGGTTTGAAAccattatgttttagtcaaacatatctGTTTAGTCAAtctgcagtctacaaatgatttgtaattgtgTTCCGGCCCGCCGACCATTCGCTTCAGGAAAAAAAACGACCCCCGGCTAAATCTAATTGATGAACCCTGGCATAGGCTCACACACAAGGGAGCCAGgcccactcactggggagccaggcctagcCAATCAGAATATGTTTTTCCCCACGaaagtgctttattatggacagaaatactcctcagtttcatcagctgtccagtgACTGTTCTCTGACGattccacaggtgaagaagctgaatgtggaggtcctgggcaggccacatggtctgcggttg

Function

NR:

description
phospholipid phosphatase 6

GO: NA

KEGG:

id description
K22904 PLPP6; presqualene diphosphate phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599299.2 True 2568 mRNA 0.48 2 26144149 26149802

Neighbor

gene id symbol gene type direction distance location
LOC110521613 LOC106584281 coding upstream 289789 25832288 ~ 25854360 (+)
LOC110521611 LOC106584283 coding upstream 318646 25688091 ~ 25825503 (+)
trnaa-agc-10 NA coding upstream 359982 25784095 ~ 25784167 (+)
LOC110521610 NA coding upstream 456193 25682300 ~ 25687956 (+)
LOC110521607 LOC106584286 coding upstream 490244 25636582 ~ 25653905 (+)
si:dkey-239i20.4 LOC106584276 coding downstream 6083 26155885 ~ 26170182 (+)
LOC110521621 LOC106584275 coding downstream 23546 26173348 ~ 26192262 (+)
LOC110521622 prrc2c coding downstream 52437 26202239 ~ 26252093 (+)
LOC110521623 vamp4 coding downstream 108135 26257937 ~ 26282393 (+)
LOC110521624 myoc coding downstream 142451 26292253 ~ 26304720 (+)
G2217047 NA non-coding upstream 226449 25916976 ~ 25917700 (+)
G2217031 NA non-coding upstream 244295 25899224 ~ 25899854 (+)
LOC110521605 NA non-coding upstream 717275 25412311 ~ 25426874 (+)
G2216336 tgm1 non-coding upstream 766916 25314529 ~ 25377233 (+)
LOC110521625 mettl13 non-coding downstream 163678 26312180 ~ 26314731 (+)
G2217277 NA non-coding downstream 168339 26318141 ~ 26324770 (+)
G2217304 NA non-coding downstream 223999 26373801 ~ 26398614 (+)
G2217315 NA non-coding downstream 241107 26390909 ~ 26391160 (+)
G2217476 NA non-coding downstream 521701 26671503 ~ 26671724 (+)
G2217159 LOC106584278 other upstream 11105 26127054 ~ 26133044 (+)
LOC110522768 LOC106584287 other upstream 555634 25566527 ~ 25590680 (+)
G2216357 NA other upstream 770539 25364252 ~ 25373610 (+)
G2216024 LOC106584303 other upstream 1030551 25030998 ~ 25174051 (+)
G2217442 NA other downstream 457721 26607523 ~ 26607943 (+)
LOC110521633 LOC106584207 other downstream 572183 26695809 ~ 26795605 (+)
G2218483 NA other downstream 1075572 27225374 ~ 27226305 (+)
LOC110521646 LOC106584219 other downstream 1348075 27497328 ~ 27519290 (+)
LOC110521656 LOC106584103 other downstream 1688106 27823914 ~ 27844041 (+)

Expression


Co-expression Network