LOC110521621 (LOC106584275)


Basic Information

Item Value
gene id LOC110521621
gene name LOC106584275
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 26173348 ~ 26192262 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110521621
TTTGGCTCATTTCCACCCTTTTGTCTACTGGAATAGAGAGGACCCCCACGTGTCACAGGACTCCTCTGAAGCGGGTCCCTCAAGTCTGACCAGCATCAAGAGCTGTCTGGATGAGGGTATGGAGCCCACCTGTTTCGAGAGCAGTGATGACATCGGGGGACTGTGGAGGTTCAAGGAGCATCCAGACCCAGGAAGGGTCAACATCTACCAGTCTGTCATCATCAACAGCTCCAAGGAGATGATGTCATACAGCGATTTCCCTCCTCCTGCTCACCTGCCCAACAACATGCACCACCCCCAGCTGCTGAGCTACCTACGACTTTACGCTCAGACCTTTGACCTCTTCAAGCACATCTAATTCCAGACCACTGTGGTGAGTGTGCGTCAGAGGCCAGACTTCCCAGTGTCAGGCCAGtgggaggtggagacagagagaaggtcagagggagattcaggtctttGATGCTGTGATGGTCTGCACCGGTCACTTTACACAACCACACTTGCCTCTCAATGACTTCCCAGGTATAGAAGAGTTTGAGGGCAGGTACTTTCACAGTTGGGAATACCTCAGTGCTGAGGGGTTGCAGGGGaagagggtggtggtggttgggattGGGAATTCTGGAGGTGGCATCGCTGTGGATGCCAGCAGAGTAGCGGAGCAGGTGTACCTCAGCACGCGGAAAGGGGCATGGGTGGTCAGCAGGGTGGGGGCGGGGGGACTGCCAGGTGACCTGGTGGGCACTTCAAGATTGGACAGGCTAGTGCAGAAGCTCTTCCCCTCCTGGATTACCATGATGATGGAGAAGAAACTGAACAGAACCTTCGACCACAGACTGTACGGCCTACAACCAAAACACAGGTTCTTTGCCCAGATCCCAGTGGTGAATGATGATCTACTTGGTCGAATCATCTCTGGTCGTGTTCTGGTCAAACCTAACATCAGGGAGATCAAAGGCTCCAGTGTGGTGTTTGAGGATGGGAGCGTCGTGGAAAagGTGGATGTTGTGGTGTTTGCCACTGGCTACAACTATGACTTTCCTGCCTTCGGGTCTGCTGACTAATGGTGGTCACTGCCTGTGTCTGTACCGTCATGTGTTCCCCCCGGGGCTGGCTCGGCCCAGTCTGGCTGTAGTGGGCTTCATCTGTAACCTGGGAGCCATCAATCCTCTGGCTGAGATGCAGGCCCGCTGGGCCACCCAGGTCTTTAAAGGGTTACTAACACTGCCCTCACAAGAAGCCATGCTGCAGGCCGTAAAGAGAGATACCAGCACGCTGCAAAACAGgTTTGCCTGTTTGGAGCGTCACCCTCTCCAGGTGGACCATATCCCCTACATGGACTCCATGGCAGAGGAGTTGGGGGTTCGTCCTAATCTCCTAGGGCTCCTGTTGAGGGAGCCTGGTGTAGGGCTGCGTGTGCTACTGGGGCCCTGCACCCCGTACCAGTACCGTCTGAGAGGGCCAGGACAGTGGGACGGAGCCCGACAGGCCATCCTCACCCAGTGGGAGCGTGTAGCCCAGCCCTTCAGGACCAGGATGCCGCCACaaccagagagcagaaccagagcctcctctagtctgatactGACTCTGTCTGTCACTGTTCTCCTACTAACAACCTTCTATACCAGACACAGTCTCTCATCACTCCCCACAGGCCTCCTCTATAAGATATACAGTCTACCTGAGATCATATGGGAGGTGGAAATTAACACTATGGGCCTATTGCATCCACTGTTGGCCACCATTTTATCTCTCATTAaactatcaatacacactaagaTCACCCGCACAGCTGATCTTAATTGTTTCCAAAATGTACTGTTCTCTAAAAGCCGAGCTACATGTGACGTCAGTGTTAACTTAGCCTCGCTTTATTCAAACATTTTCCAAGACAGGCTATTTATTATCTTCGGTAGAAATAAAACCTGGAAACCGAGCAGACTAAGGGGTGATTGAACTATTTCACAATAATTCAGTGCAACTAAAATAAAGCATTTTCTTGTTTAGAAATTATACTGTGGCAATAAATTGTACAGGTTATAGCATATGATGTTGTCCATTAATTACAACTTGTCTTATTAACTATGGTTATTTCTGATCAAGAGGACAAAACCAAACATCCCTGAATTGTCCATATCAAAATTGTGTAACTAAATCAAGCCAATCATGACTTATTTCATGTAATCTTTGTTTTTGTAAAATTCAACAGAGACAAAAAAATAAATTTATTGGCTGCAAGGAATATGGAGGAAGTCACTCCAGCAAAGTTGCACCCATCAAATTCCATTTAAAACAAACCGATCCACAAAATGACAATTGTGACAATTGTTGGCACCCCATAGGGATTCTTACTTATGAAGAAATGCACTTCCTTTGGCTCCCTTTAACTGGGGTATAAAAATAAAGCATTTTTCACCAATCACAATGTGGAAAGgcaaaaacactcacaaattcaaaaataaaaaaattgtttcCACTTTTAAACAATAGGTTCACTATTAGGTCAATAATTAAGAAGCTCAAACCCAGACTCAAACCCACACAACAGTACATGTGCACTGGAGGCAGTTGCACAGACCACTGATTGGACTTCTTGGTTTTGACTTAAAAGTTAAAGAAACACATAGGTCTTAGCCAATTTAACTTAATTTTGTAAGTTAAGTCAATGTACAGATTTGTAGTTATCCTGACTTGACATTTAAAGTCAAGACAACTGTTGTCTTCATTTACTTCATTTGACTTATTGGATCTAATttcaggaaggaaggaaggaaggaacacaAAGTTCATTCAACTTGATTTTATAAGTTAAGACAATGACTTGTAGTTATTATAACatgtcattttttgtcaacacAACTGGGATCTTGTTTTAGTTTATTTGACTTATTAGTTTTGATTTGAAAGTTGACTGAACAAATTGTTCTCACTTTGTGCAGAAAGTGTGGTTCCACCTAAAATGATTTTCAAAAGAATATTCCATCGCCGGAAGTCAACACCATTCCCTGTTGTTTGTCAGTGTTCTTTGGTCCCGATTACCTGCTTAGCTAGTTCAGGTGACACTGCATGAAAAAAATCCTAACTTCATTGTAAGTATGGTGTCCACTAGAGATCGGCGTTTGAAAGCAACTTCGAAGATAGCACGTGAGTCCATTGGGTTGTtgaagcgatgagacaagatcggaATTGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110521621 True 3196 mRNA 0.46 11 26173348 26192262

Neighbor

gene id symbol gene type direction distance location
si:dkey-239i20.4 LOC106584276 coding upstream 3166 26155885 ~ 26170182 (+)
LOC110521618 LOC106584277 coding upstream 23546 26144149 ~ 26149802 (+)
LOC110521613 LOC106584281 coding upstream 318988 25832288 ~ 25854360 (+)
LOC110521611 LOC106584283 coding upstream 347845 25688091 ~ 25825503 (+)
trnaa-agc-10 NA coding upstream 389181 25784095 ~ 25784167 (+)
LOC110521622 prrc2c coding downstream 9977 26202239 ~ 26252093 (+)
LOC110521623 vamp4 coding downstream 65675 26257937 ~ 26282393 (+)
LOC110521624 myoc coding downstream 99991 26292253 ~ 26304720 (+)
LOC118945901 NA coding downstream 106711 26298973 ~ 26299025 (+)
LOC110521625 mettl13 coding downstream 119918 26312180 ~ 26314731 (+)
G2217047 NA non-coding upstream 255648 25916976 ~ 25917700 (+)
G2217031 NA non-coding upstream 273494 25899224 ~ 25899854 (+)
LOC110521610 NA non-coding upstream 485409 25682300 ~ 25687956 (+)
LOC110521605 NA non-coding upstream 746474 25412311 ~ 25426874 (+)
G2216355 NA non-coding upstream 817396 25350845 ~ 25355952 (+)
G2217277 NA non-coding downstream 125879 26318141 ~ 26324770 (+)
G2217304 NA non-coding downstream 181539 26373801 ~ 26398614 (+)
G2217315 NA non-coding downstream 198647 26390909 ~ 26391160 (+)
G2217476 NA non-coding downstream 479241 26671503 ~ 26671724 (+)
G2217159 LOC106584278 other upstream 40304 26127054 ~ 26133044 (+)
LOC110522768 LOC106584287 other upstream 584833 25566527 ~ 25590680 (+)
G2216357 NA other upstream 799738 25364252 ~ 25373610 (+)
G2216024 LOC106584303 other upstream 1059750 25030998 ~ 25174051 (+)
G2217442 NA other downstream 415261 26607523 ~ 26607943 (+)
LOC110521633 LOC106584207 other downstream 529723 26695809 ~ 26795605 (+)
G2218483 NA other downstream 1033112 27225374 ~ 27226305 (+)
LOC110521646 LOC106584219 other downstream 1305615 27497328 ~ 27519290 (+)
LOC110521656 LOC106584103 other downstream 1645646 27823914 ~ 27844041 (+)

Expression


Co-expression Network