LOC110521624 (myoc)


Basic Information

Item Value
gene id LOC110521624
gene name myoc
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 26292253 ~ 26304720 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599309.2
CCTGAGCTGTTGAGAGGGACTCAGAGACCTGAGGACCCTGACCTGTGAAACAAACagaccagaagagagagagagagagagaggcagacagcaaGACAACAGACAGAATAATCAGAGAATAAGAACAAGAATCAGCAGTAACACATTAGGGAAATAAAGtaagataaataacaataagaAATAAGGAGATGGAGAACATTTGGGCCAGAACCAAGTGAAGTGATAAAGGGGCAATCACCACGACAGAGAAAGAAGAGCTGAAACACAGAGTGAAATAGGAGACACATTGATgagacaaagagagtgagagagaccagaAGAACCGTGTCTAGTCTACATCTGTGTGTAGCCCacttgtgtggttgtgtttgtatcCACCATGTGGCTGCTGCTTAATGTTTGTGTGTTCTGTCTGCTGCAATATGGTGAGGGGCAGGACCGTGCCACTCTCTGGAGAGGGAACGACCGTAGCGGGCACTGTCAGTACACCTTCACCGTGCCCAGCCCCAGCGAGACCAGCTGCCCCCCTACAGCCTCCGGAGGACCAGAGATGGAGGGGCTCAAGACTAGACTCAGCCTGCTGGAGGTATTGGTGGCCAGGCTGACTGGAGGGGAGACAAGGGATCCTGGGCTTGGGGCTGGGTCCCAGGCTGGTCTGCAGGAGGCTCTGACGCAGGCCATGGGAGACAGGAGCCTAttgcagggagagaaggagcatctggagagagatgtggaggggctgcagaggagggtggaggagatgaggagagagacggagagactgaAGAGCAGACCCTGCTACCCGCAATCCCCTCTGGTGCCTCCCAGCGTCCCACTACAAGACAGTGGTCTGCGACTTGCCGGAGATGCTGGTGTTCTCTCTCACCTGGTATCCAATGCTGGAAGACAAGGGGACACTGGCAGTTTGAGAGacCCAGCATGGCGGTATGGTGGCAATGCAGGGTTCCAGGAGTTGAAGGCTGAGGTGACTGAGATTCCTGCTCCTAGTACTGAGGACAGCACAGgctGTGGGGAGTTGATATCAATAGGAGAGCCAGTGTCCCATCGTAAGGCTGATAGTATAGCTGGTAAATATGGGGTCTGGATGCAGGATCCGGAGGCTGTGGCGCCCTACGGAGGGAAGATGGTGTGGCGCATCGATACtgtggggtcagaggtcagacagCTGTTTGGTTACGAGGACATGGACCAGCTCTCTAAAGGCTACCCCTCAAAGGTGTTGCTGTTGCCGGAGCCAGTGGAGAGTACAGGAGCGACTCTGTACCGCGGCTCTCTGTACTACCAGCGCCGCCGCAGCCGCACCCTGCTGAGGTACGACCTGGCGTCTGAGAGCATCGCCGCCCGCCGAGACCTGCCCCACGCCGGCTTCCACGGTCAGTTCCCCTACTCCTGGGGCGGCTACACCGATGTGGACCTGGGGGTGGACGAGCAGGGCCTGTGGGCCGTCTACAGCACCAACAAGGCTAAAGGAGCCATAGTGGTGTCCCAGCTGGACCCACACAGCCTGGCGGTGAAGAGGAGCTGGGAGACCAGCATCAGGAAGAACAGCGTGGCTAACGCTTTCGTCATCTGTGGCCGTCTCTACACGGTTGCCAGCTACACTGCTCCTAACACCACCATCAACTTTATGTTCGACACAGCTACAGGCCAGGGGAAGCAGGTGGCGCTACCCTTCAGGAATAAGTACCGCTATAACAGCATGGTGGATTATAACCCTGCCCAAAGGAAGCTGCACGCCTGGGACAACTTCCACATTGTCTCCTACGACGTCAGGCTGGGTCACCAGTAGAGGAACTCACAACAAAAACCTTTCAAAAAGACTTTCTCTTGTCTTTAGAGCAGTTAGTGTGGTAGTCAGTGGTTAGAATGCTATTTTTTACCACCTTCATCGATGCGAAGGTTTAGTAGTTACCAAAACTGGCCACAGCAGTGATTGAGATGAAGCTTTTTCAAGCAAATTGTGTTATGAATAAAAACCCCTGCAGGTATCTTGTTTCAGTGGGAAGGCTTTTGCTGTGGCACAGTCCACAAACATGTTTATAGAGGAATTATTTTTCTACTGTTTAGTTGTAAGAGATCGGCttttattgtgttttgatgtatagTGTTGAAAGGGAGGTGAGGGGGCAAAGAATAAATAGTAAAGTTTACTTCTTGCATACTGTACCATTGGTCATCATACAAACTGTATTGTGTATAAAACTCCTTCTGACCTGTGCATTGTACACCACTATTACATTATGTACAAATTCATACAAAGGTCAAATAAAAGGTATCCATTCTAAATAACAA

Function

symbol description
myoc Predicted to act upstream of or within positive regulation of cell migration; regulation of cell-matrix adhesion; and regulation of stress fiber assembly. Predicted to be located in several cellular components, including extracellular space; mitochondrial outer membrane; and rough endoplasmic reticulum. Is expressed in caudal fin skeleton; eye; and postcranial axial skeleton. Human ortholog(s) of this gene implicated in juvenile glaucoma; low tension glaucoma; ocular hypertension; open-angle glaucoma; and primary open angle glaucoma. Orthologous to human MYOC (myocilin).

NR:

description
myocilin-like

GO: NA

KEGG:

id description
K23027 MYOC; myocilin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599309.2 True 2313 mRNA 0.52 5 26292253 26304720

Neighbor

gene id symbol gene type direction distance location
LOC110521623 vamp4 coding upstream 9860 26257937 ~ 26282393 (+)
LOC110521622 prrc2c coding upstream 40160 26202239 ~ 26252093 (+)
LOC110521621 LOC106584275 coding upstream 99991 26173348 ~ 26192262 (+)
si:dkey-239i20.4 LOC106584276 coding upstream 122071 26155885 ~ 26170182 (+)
LOC110521618 LOC106584277 coding upstream 142451 26144149 ~ 26149802 (+)
LOC110521625 mettl13 coding downstream 7460 26312180 ~ 26314731 (+)
LOC110522769 LOC106613976 coding downstream 11254 26315974 ~ 26358491 (+)
LOC110521629 LOC106584269 coding downstream 141727 26446447 ~ 26457719 (+)
LOC110521630 mysm1 coding downstream 153085 26457805 ~ 26478401 (+)
oma1 oma1 coding downstream 172315 26477035 ~ 26501552 (+)
G2217047 NA non-coding upstream 374553 25916976 ~ 25917700 (+)
G2217031 NA non-coding upstream 392399 25899224 ~ 25899854 (+)
LOC110521610 NA non-coding upstream 604314 25682300 ~ 25687956 (+)
LOC110521605 NA non-coding upstream 865379 25412311 ~ 25426874 (+)
G2216355 NA non-coding upstream 936301 25350845 ~ 25355952 (+)
G2217277 NA non-coding downstream 13421 26318141 ~ 26324770 (+)
G2217304 NA non-coding downstream 69081 26373801 ~ 26398614 (+)
G2217315 NA non-coding downstream 86189 26390909 ~ 26391160 (+)
G2217476 NA non-coding downstream 366783 26671503 ~ 26671724 (+)
G2217159 LOC106584278 other upstream 159209 26127054 ~ 26133044 (+)
LOC110521611 LOC106584283 other upstream 479947 25688091 ~ 25825503 (+)
LOC110522768 LOC106584287 other upstream 703738 25566527 ~ 25590680 (+)
G2216357 NA other upstream 918643 25364252 ~ 25373610 (+)
G2216024 LOC106584303 other upstream 1178655 25030998 ~ 25174051 (+)
G2217442 NA other downstream 302803 26607523 ~ 26607943 (+)
LOC110521633 LOC106584207 other downstream 417265 26695809 ~ 26795605 (+)
G2218483 NA other downstream 920654 27225374 ~ 27226305 (+)
LOC110521646 LOC106584219 other downstream 1193157 27497328 ~ 27519290 (+)
LOC110521656 LOC106584103 other downstream 1533188 27823914 ~ 27844041 (+)

Expression


Co-expression Network