LOC110521625 (mettl13)


Basic Information

Item Value
gene id LOC110521625
gene name mettl13
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 26312180 ~ 26314731 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110521625
ATCCAATCGGAATGTTGTTGTGTACAGCTGGAAATAATGTCCGGGTGAACATACCATCTCGGGAAGACAGCAAACTAGAATGCAACCATTTATATTTAGAGAACGGCATATTTTGGACAAAATGACGATACAACAGTTGCTATCCGTAACTTAGTTAGTTAACAGTTATCCTACAAGTGACTGAATCTTAGCTAGCTTGTTTAAAGCTATTTGAAAGTTGTCTTACATGTTAGTTTGTTGAAGTAGCCTACAGAGATACACCAGGATACACCTTGCTACCTAGTGAAGATGAGTCTTCTAACTCGCACTACCGAGGGGTTCAGCTCCACTGAGTACTGGGAAGCTTCTTCAAGAAGAGAGGAGGTATGGAGACAACAACAAACTCTGTGGCATGCTGCTCAAATACATCAAACCTCGGGATAAGATCTTGGTGGTGGGCTGTGGTAACTCTGAGCTGAGTGAGCATCTGTATGATGTCGGCTACAGACATCTGACCAACATTGACATCAGTGAGACGGTGGTGAATCACCTGACCTTCCAGAAGGTGGATGCCACACAGACGCCCAATGAGGATGAAAGCTACCAAGCTACACTGGACAAGGGGACACTGGACACCATGGCCTCCCAGGAGGAGGGGGTTCTAGCTGGGAGGATACTGGCTGAGGGACCAGGAGTATACGGACATGCAGTCTGTCCAAACAGAGCTCTCTCCCATGGGGATGGAACTCGCCCCCCCCGGGATGCCAGCCAATCAGCAGCCTCCACTCAGAAAAGAGCAGAAGGAAAGCCCTCTGCCCCTCCCCCTGTGCCCTCACAGACACCAGGTGGCACCCTGGCGGTGGATAAGGGCTTGGTCTGTTGTGCCCACCACAGGGTCATGGTGGCTGGCCTTGCCATACTAGGAGTGGGCTCCAACCACAACACCGACGTCCTAGTGTCAGTGCTCCTGGTGGGGCTGGGTGGAGGAGGGCTGGAGCTGTACCCTGCAGTGCTGAACCTGAAGGTTtcatgaggagaggaggatgagaaggaggagaagaggggaagaccTTGTGAACAAGTATCATGATCTCATACTTTActgtatacaaaataaaaacatgtaca
>TU2536158
TTTATCTTATTAAACAACATGGGGAATGTGTTAATATGAATTTAATGCTTTTTTATTATTTCAATGTGGAACATAATTGCCTCATTCATGGCTCAGCTGAGGGTCGTGGACAACTAGCAGCTAGCGCTAACTAAAGGTGACTGGTTGTATAGGGACCAGGAGTATACGGACATGCAGTCTGTCCAAACAGAGCTCTCTCCCATGGGGATGGAACTCGCCCCCCCCGGGATGCCAGCCAATCAGCAGCAGCCTCCACTCAGAAAAGAGCAGAAGGAAAGCCCTCTGCCCCTCCCCCTGTGCCCTCACAGACACCAGGTGGCACCCTGGCGGTGGATAAGGGCTTGGTCTGTTGTGCCCACCACAGGGTCATGGTGGCTGGCCTTGCCATACTAGGAGTGGGCTCCAACCACAACACCGACGTCCTAGTGTCAGTGCTCCTGGTGGGGCTGGGTGGAGGAGGGCTGGAGCTGTACCCTGCAGTGCTGAACCTGAAGGTTtcatgaggagaggaggatgagaaggaggagaagaggggaagaccTTGTGAACAAGTATCATGATCTCATACTTTActgtatacaaaataaaaacatgtacagATGTAGTTTATGC
>TU2536159
TTTATCTTATTAAACAACATGGGGAATGTGTTAATATGAATTTAATGCTTTTTTATTATTTCAATGTGGAACATAATTGCCTCATTCATGGCTCAGCTGAGGGTCGTGGACAACTAGCAGCTAGCGCTAACTAAAGGTGACTGGTTGTATAGGGACCAGGAGTATACGGACATGCAGTCTGTCCAAACAGAGCTCTCTCCCATGGGGATGGAACTCGCCCCCCCCGGGATGCCAGCCAATCAGCAGCCTCCACTCAGAAAAGAGCAGAAGGAAAGCCCTCTGCCCCTCCCCCTGTGCCCTCACAGACACCAGGTGGCACCCTGGCGGTGGATAAGGGCTTGGTCTGTTGTGCCCACCACAGGGTCATGGTGGCTGGCCTTGCCATACTAGGAGTGGGCTCCAACCACAACACCGACGTCCTAGTGTCAGTGCTCCTGGTGGGGCTGGGTGGAGGAGGGCTGGAGCTGTACCCTGCAGTGCTGAACCTGAAGGTTtcatgaggagaggaggatgagaaggaggagaagaggggaagaccTTGTGAACAAGTATCATGATCTCATACTTTActgtatacaaaataaaaacatgtacagATGTAGTTTATGC

Function

symbol description
mettl13 Predicted to enable methyltransferase activity. Predicted to act upstream of or within methylation. Is expressed in brain and inner ear. Orthologous to human METTL13 (methyltransferase 13, eEF1A lysine and N-terminal methyltransferase).

NR:

description
PREDICTED: methyltransferase-like protein 13

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110521625 False 1107 mRNA 0.51 5 26312180 26314717
TU2536158 False 612 lncRNA 0.51 3 26313480 26314731
TU2536159 True 609 lncRNA 0.51 3 26313480 26314731

Neighbor

gene id symbol gene type direction distance location
LOC110521624 myoc coding upstream 7460 26292253 ~ 26304720 (+)
LOC118945901 NA coding upstream 13155 26298973 ~ 26299025 (+)
LOC110521623 vamp4 coding upstream 29787 26257937 ~ 26282393 (+)
LOC110521622 prrc2c coding upstream 60087 26202239 ~ 26252093 (+)
LOC110521621 LOC106584275 coding upstream 119918 26173348 ~ 26192262 (+)
LOC110522769 LOC106613976 coding downstream 1257 26315974 ~ 26358491 (+)
LOC110521629 LOC106584269 coding downstream 131730 26446447 ~ 26457719 (+)
LOC110521630 mysm1 coding downstream 143088 26457805 ~ 26478401 (+)
oma1 oma1 coding downstream 162318 26477035 ~ 26501552 (+)
LOC110521633 LOC106584207 coding downstream 381092 26695809 ~ 26795605 (+)
G2217047 NA non-coding upstream 394480 25916976 ~ 25917700 (+)
G2217031 NA non-coding upstream 412326 25899224 ~ 25899854 (+)
LOC110521610 NA non-coding upstream 624241 25682300 ~ 25687956 (+)
LOC110521605 NA non-coding upstream 885306 25412311 ~ 25426874 (+)
G2216355 NA non-coding upstream 956228 25350845 ~ 25355952 (+)
G2217277 NA non-coding downstream 3424 26318141 ~ 26324770 (+)
G2217304 NA non-coding downstream 59084 26373801 ~ 26398614 (+)
G2217315 NA non-coding downstream 76192 26390909 ~ 26391160 (+)
G2217476 NA non-coding downstream 356786 26671503 ~ 26671724 (+)
G2217159 LOC106584278 other upstream 179136 26127054 ~ 26133044 (+)
LOC110521611 LOC106584283 other upstream 499874 25688091 ~ 25825503 (+)
LOC110522768 LOC106584287 other upstream 723665 25566527 ~ 25590680 (+)
G2216357 NA other upstream 938570 25364252 ~ 25373610 (+)
G2216024 LOC106584303 other upstream 1198582 25030998 ~ 25174051 (+)
G2217442 NA other downstream 292806 26607523 ~ 26607943 (+)
G2218483 NA other downstream 910657 27225374 ~ 27226305 (+)
LOC110521646 LOC106584219 other downstream 1183160 27497328 ~ 27519290 (+)
LOC110521656 LOC106584103 other downstream 1523191 27823914 ~ 27844041 (+)

Expression


Co-expression Network