LOC118945773 (nek1)


Basic Information

Item Value
gene id LOC118945773
gene name nek1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 27567817 ~ 27571386 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968587.1
ATGGATAACTATGAAAAGGTGAGGAAGATAGGGGAAGGCTCTTTCGGGAAAGCAATCCTCGTCAAATCCAGGGACGATGGAAAACAGTATGTCATCAAGGAGATCGGCATCTCCCGGATGTCCAGTAAAGAGAGACAGGAGTCCCGGAAAGAGGTGGCTGTTCTGGCCAACATGAGCCACCCCAACATCATCCAGTACAAAGAGTCCTTTGAAGAGTGTGGATGTCTGTACATCGTGATGGATTACTGTGAGGGGGGAAACCTATTCAAGACGATCAACTCTCAGAAAGGAGTGCAGTTCTCTGAGGAGCAGATTAAGCAGGATTGGTTAGTGCAGATATGCCTCGCCCTGAAGCATGTACATGGCCGTAAGATCCTCCACAGAGACATCAAATCGCAAAACATATTTCTGACCGAAGATGATACCATAATGCTAGGAGACTTTGGGATTGCCAGGGCTCTGAATAGTGCTGTGGAGCTGGCCAGGACATGTATCGGGATGCCGTACTACCTGTCACCTGAGACTTGTGAAAACAAAACGTACAACAACAAAAGGCAACGGGGTCATGCGGCAGCTGAACGGGTCAATCAGGTTCAGGAGTTTCTGCAGCGTAAAAGAGACGCCATGCTGAACAAGGTGCGCGCTGAGGAACATGAACAGGGTGCCCGGCAAAACCTGGCAGCCCTCTATGGTCAGTCCAGCTACAGGAGAGTCAAACccaacaaagagaaggagGAGTACCTATCTCGGCTGAGCCAGTTCAGGCTACAGAACTTCAACGAGCGCCAGCAGATCAAAGCACGCCTCATAGGAGAGAAGTACGACAGTGATGGCTCAGACAGCCAGGTGTCCTGTGATGAGGCGGAGCCTAGGAGAAAGAAGATTGAGGCCTTGAAGGCCCAAGCACAGGCCTGTGGAGCAGCTAGAGAATAA

Function

symbol description
nek1 Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within cilium assembly and cranial skeletal system development. Predicted to be active in centrosome; cytoplasm; and nucleus. Is expressed in forebrain; head; midbrain; and retina. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis; asphyxiating thoracic dystrophy; and short-rib thoracic dysplasia 6 with or without polydactyly. Orthologous to human NEK1 (NIMA related kinase 1).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968587.1 True 933 mRNA 0.51 12 27567817 27571386

Neighbor

gene id symbol gene type direction distance location
LOC110522774 NA coding upstream 26832 27540020 ~ 27540985 (+)
LOC110521647 LOC106560251 coding upstream 30306 27521605 ~ 27537511 (+)
LOC110521646 LOC106584219 coding upstream 52267 27497328 ~ 27519290 (+)
LOC110522772 NA coding upstream 411145 27147352 ~ 27156672 (+)
LOC110521639 tmm27 coding upstream 421929 27143005 ~ 27145888 (+)
LOC118945810 nek1 coding downstream 328 27571714 ~ 27581860 (+)
LOC110521651 LOC106584225 coding downstream 37058 27608444 ~ 27662348 (+)
LOC110521654 cbr4 coding downstream 101534 27672920 ~ 27685270 (+)
LOC110522775 NA coding downstream 229908 27801294 ~ 27822868 (+)
LOC110521656 LOC106584103 coding downstream 252528 27823914 ~ 27844041 (+)
G2218823 LOC106584220 non-coding upstream 2640 27563811 ~ 27565177 (+)
G2218801 NA non-coding upstream 66658 27500303 ~ 27501159 (+)
G2218553 NA non-coding upstream 289368 27278240 ~ 27278449 (+)
G2218507 NA non-coding upstream 324025 27243592 ~ 27243792 (+)
G2218907 LOC106560254 non-coding downstream 118926 27690312 ~ 27692184 (+)
G2218953 NA non-coding downstream 176687 27748073 ~ 27754271 (+)
G2219002 NA non-coding downstream 238278 27809664 ~ 27810344 (+)
G2219003 NA non-coding downstream 240178 27811564 ~ 27811802 (+)
G2219005 NA non-coding downstream 244136 27815522 ~ 27815767 (+)
G2218483 NA other upstream 341512 27225374 ~ 27226305 (+)
LOC110521633 LOC106584207 other upstream 815353 26695809 ~ 26795605 (+)
G2217442 NA other upstream 959874 26607523 ~ 26607943 (+)
G2217159 LOC106584278 other upstream 1434773 26127054 ~ 26133044 (+)
fip1l1a fip1l1 other downstream 722509 28260830 ~ 28307538 (+)
G2219989 LOC105940532 other downstream 976152 28547538 ~ 28548084 (+)
G2219991 NA other downstream 977643 28549029 ~ 28549478 (+)
G2220253 NA other downstream 1450200 29021586 ~ 29021882 (+)

Expression


Co-expression Network