LOC118945810 (nek1)


Basic Information

Item Value
gene id LOC118945810
gene name nek1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 27571714 ~ 27581860 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040961.1
GACATGGGTACGGTCACCCTAAGCTTTTCCCAGCTATTATTGAGAGAATACCTTCATtatgcaaaaaataataatcttacACAAAGTTGTTTTTCTTCTCTCATTTGTCTCCCTGCCAGCACCTGGCAGAGCTTTCCGTTGAAAGAGGACTCGCCTAAAACAGTTTGGTTGTTTGGTTTTAATGGAGATTTCAGAGTGAGAAGGAGATTCCCTGTAGACTGAATGAGAACCTGAAGGCCCAGAGCCCTGAGGAGGAGGTGTCAGCCACAGCCCCAGAAGGACAGTGCCCCGCCCCCCAGCAGAGCCAGCCTATCACAGAGGAGAGACCGTCCTTTGGTGGGAACAGGAAGAAGTAGGAGGCTGGAGCTCCGTCGATTCTCTCTGTAGCCCAGCAGACACCAGAATAGAACTGTATCAGAACGACTGGCTCGGTCTCCAGAAGAGAGATTGTCCTCTGGTGGGGACAGGAAGAAATGGGAGGCTGGACCTCCACCCATTCTCTCCATAGCTCAGCAGACCATAGAGGACCGCTGAGCAGACAGTGGGCGAGGTCATTCGGATGGACGATGTCCCCAGAAAAGCGTTTCTCAGCTGCTGGGGAACGTCGGCATCTGTGAAGAGAAACTCACCGATCCAGCAGACTTGGAGTCAGTGGTCCTGGAGGCGGGCAAAAAGCGGGCTGCAAATCCCCCAGCTGGCGTAGAGCAGGCATGGGAGGAACAGGCCCTGCTGCTGAGGCCACCAGGGGGCAGAGTAACACCAGCAGAAACCAAGGGGTTTGGGGAGAGGGCAGAGAAATAACCCAAATCGTCAGCTATAGTGCCAGTGTGTGAGAAACCTCTGTTTGTGAAGCCGTGCTCCTCGCCGGCCCACCGTCGTACTGCAACTCTGGTTCTTATGTCAGCCCAGTCGTCCATGGAGGACTCGTCCTCCTCTCTGGCCTCACGCTCTCGCTCAGTCTCTCCGCTCCGCTCACAACAGCGCCCTCTTCATCGGTTCGAAGCCTCcgttgatgtacaagtacaccctctGGACAGGACGCTGGTCTATCGCAAGAAATCAAGATTGTGTTTAGAGatGCTGCGGACCTGTTCTCTCCTAGACCTCAGCAGACTGTTCAGCTCATTACAGGAGGCAGGAGGGGGCAACGGGGCTGTTGCccccgacaacaacaacaacctggcGATAGAGACAATGGAGGAAGAAGAGGCCAAGGAGGATGAACAATCAGAGAATGAGGAGATGATGACCTGAGGGAGTTAAGGGCCTCCATAGAAAGACTCCTACATGAGGAGCGCaacgaggaagaggagaggggttaTGAAGATGGTAACGGGAGCCCtccagaggaagagggaggagattGCTTCAACGGCAACCCTGCtttggatgatgatgatggtgatgatgatgatgacgattcTGCTGAGGTAGAGGAGGAGCTGAACGGGATggctgaggatgaggaggagagttcTAATTGGATTCCAGGTGATGAGGAGGCAGGACACATACTCACCAACGGACTGGAAGAAAGGAGCACCACAGCAGTGAGAGCCAGCTCCATGAAGAATGGAAGACGAGGAGCACCACAGCAGTGAGAGCCAGCTCCATGAAGAATGGAAGACGAGGAGCACCACAGCAGTGAGCGCCAGCTCCATGAAGAATGGAAGAAGAGGAGCACCACAGCAGTGAGAGCCAGCTCCATGAAGAATGGAAGAAGAGGAGCACCACAGCAGTGAGAGCCAGCTCCATGAAGAATGGAAGAAGAGGAGCACTACAGCAGTGAGAGCCAGCTCCATGAAGAATGGAAGAAGAGGAGCACCACAGCAGTGAGAGCCAGCTCCATGAAGAATGGAAGAAGAGGGGCACCACAGCAGTGAGAGCCAACTCCATGAAGAATGGAAGAAGAGGAGCACCACAGCAGTGAGAGCCAACTCCATGAAGAATGGAAGAAGAGGAGCACAACAGCAGTGAGAGCCTTTTCCATGGGGAATGGCAATCAGACGacagtggtgaggaggaggatgttgaaGCTGAACAGCAGGACAGCATCTACAGCCGTCTGGAGGAGCTGCGTTTGAACCTGGAGCAGGAGATAGGCTTTGAGAACTTTATAGAGGCCTACAACACGATCAAGGATGGGACATGCTGACCCTCTACCCTCATGATGTCATTTATGATCTATCGTCCAGAAATGACGGATGGTAATTGAATGTTCATGTCATTGTACCATTAAAGGCAATTCATGAGGTTGAGGATGAGAACATCAACATGTTATTGAACAACATCCTGGGGACTGAGCACCAGCACCTGTACCCCAACATCCTTCACCTGGTCATGGCTGATGGAGCCTACCAAGAGGATAATGATGAAATTGGGATGTGTGTCCAAGCCGCTGGCAACTTTTGACAATCTACTAGCCATCCGATGTCTTCCGATGGTTGGAGAGGGGTTGGAGCCAGGCCCAGGCACACTtgcatgggtgcacctcagccacgggtgcacctcagccacgctcaaggtactaaacgatatcataaccgccattgataaaagacagtactgtgcagccgtcttcatcgacctgg

Function

symbol description
nek1 Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within cilium assembly and cranial skeletal system development. Predicted to be active in centrosome; cytoplasm; and nucleus. Is expressed in forebrain; head; midbrain; and retina. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis; asphyxiating thoracic dystrophy; and short-rib thoracic dysplasia 6 with or without polydactyly. Orthologous to human NEK1 (NIMA related kinase 1).

NR:

description
serine/threonine-protein kinase Nek1 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040961.1 True 2591 mRNA 0.53 10 27571714 27581860

Neighbor

gene id symbol gene type direction distance location
LOC118945773 nek1 coding upstream 328 27567817 ~ 27571386 (+)
LOC110522774 NA coding upstream 30729 27540020 ~ 27540985 (+)
LOC110521647 LOC106560251 coding upstream 34203 27521605 ~ 27537511 (+)
LOC110521646 LOC106584219 coding upstream 56164 27497328 ~ 27519290 (+)
LOC110522772 NA coding upstream 415042 27147352 ~ 27156672 (+)
LOC110521651 LOC106584225 coding downstream 26584 27608444 ~ 27662348 (+)
LOC110521654 cbr4 coding downstream 91060 27672920 ~ 27685270 (+)
LOC110522775 NA coding downstream 219434 27801294 ~ 27822868 (+)
LOC110521656 LOC106584103 coding downstream 242054 27823914 ~ 27844041 (+)
LOC110521658 LOC106584105 coding downstream 269945 27851805 ~ 27855190 (+)
G2218823 LOC106584220 non-coding upstream 6537 27563811 ~ 27565177 (+)
G2218801 NA non-coding upstream 70555 27500303 ~ 27501159 (+)
G2218553 NA non-coding upstream 293265 27278240 ~ 27278449 (+)
G2218507 NA non-coding upstream 327922 27243592 ~ 27243792 (+)
G2218907 LOC106560254 non-coding downstream 108452 27690312 ~ 27692184 (+)
G2218953 NA non-coding downstream 166213 27748073 ~ 27754271 (+)
G2219002 NA non-coding downstream 227804 27809664 ~ 27810344 (+)
G2219003 NA non-coding downstream 229704 27811564 ~ 27811802 (+)
G2219005 NA non-coding downstream 233662 27815522 ~ 27815767 (+)
G2218483 NA other upstream 345409 27225374 ~ 27226305 (+)
LOC110521633 LOC106584207 other upstream 819250 26695809 ~ 26795605 (+)
G2217442 NA other upstream 963771 26607523 ~ 26607943 (+)
G2217159 LOC106584278 other upstream 1438670 26127054 ~ 26133044 (+)
fip1l1a fip1l1 other downstream 712035 28260830 ~ 28307538 (+)
G2219989 LOC105940532 other downstream 965678 28547538 ~ 28548084 (+)
G2219991 NA other downstream 967169 28549029 ~ 28549478 (+)
G2220253 NA other downstream 1439726 29021586 ~ 29021882 (+)

Expression


Co-expression Network