LOC110522775


Basic Information

Item Value
gene id LOC110522775
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 27801294 ~ 27822868 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110522775
ATGGGGGAGGAGGAAGGCCAGGCTCTGTCAGTCAcaTCCTGGACTTTAGCCCCGGGAACACTTAAGCTGGTGGTGCTGTGTGATGCAGAGATTCTTCATCTGTTCCCAGTGGAGAACCCTATGCCCTGGATGGAGGTGCTGGAGAAGAGCAGTGTCCTCTACTCATTCTACACCTCTGAAGACGAGTCCAACCTTTTTCTTCCCAAGTTGCCAACTCTTCCCAAGAGTGAGGAGTCAAACGAGATCCTAAACCTTATGGGGGAAGTGAGTGATGCAAGTTTCACATGCTTTATTATGGAAGATTCAGTTAACACACAATCTCATGGGATATGTCATATCCTGTGTCTGTCCGGTGACCTGAAGTCCCTGTTTATCATCAAAGAAATCAGGTCAGCTGACAACGACCCGGAGATCTGCTACATCCAGCTCGACACAGGGCTGCTGTCCCACTGTCTCCCTTAGGTCACCAGGATGGCACATAAGTTCACCCACATCTCCACTCTGCTGCAGGTCATACCTgcgtctccctctctcacccgtATGTGTGAGGTTTGGGAGGATATCCTCATGCAGATGGACCTTAGGCTCACTAAGTTCGTTCAGGAGAAGAACACCAGCACACAAGTCCAGGATGAGTTTCTGTAACTTCTACTATGGGGACGATCAAGcccagaactacaggCTCTCCTCATGAATCAGCTGACCGTCAAGatctgtgtggaggtggacgtgtCCGAGCCTGGGATCAGAGCCGTTCTCGctcagcgctcgggcacgccactGAAGCTCCGCTCCTGTGCTTTCTTCTCAAAGAAACTCAGCCTGgcggagcggaactatgatgtggggcaccgggagctACCTGTTCTCACTGGTTTCGTGGCGATAGATCTGAGTGATGTTCTCAGCCACAGTATTGATAATGATGCTTCAGGAGTCAGTTGCCAGGATGCTCGTTTCTATGACGATGAAACATTGACAGTGGTGCTGCAAgcatcagaggaggaggaggagagcagggggCGTGTCCTGGCCCAGCTCCCTCTCGGCTCAGCTCTCAGCTGTGAGGAGGAGTTCCACTGGAACCCCAGTCTTAGTGTACGGTTAGACCAGCAGAGTGGTGCCATCCATGCACATGGGGTGGTACTGGAGAATCAGTGGAGAGACTTGAAGAACATGAAGGCCCAGTTTGGGGCTGTGAATTGGATCCGGAAAGTGGCCTGTGTGCTCCAACCTGCCCTTGTGTTTGAGATGGATGTGGAGGATGAAGAGCGGCCTGAGTTGCAGAACGCCAGCTCTGATCAGGATGGTCTGGAGGAGACGCTGGCCAGCCAGGGGGAAGCTGAAGGAGGAGAGACTAAGGGGCAGGGAGGGGGACAAAGTGCTGAGCAGCGACTGGAGTGTGGGGAAGCCCTCATTCTGTTAGCAGCACCTCATCTAGGCAATATAACAATCGACTACCCCATACTTTGGCGGTAAT

Function

NR:

description
anaphase-promoting complex subunit 4 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110522775 True 1480 mRNA 0.53 14 27801294 27822868

Neighbor

gene id symbol gene type direction distance location
LOC110521654 cbr4 coding upstream 116024 27672920 ~ 27685270 (+)
LOC110521651 LOC106584225 coding upstream 138946 27608444 ~ 27662348 (+)
LOC118945810 nek1 coding upstream 219434 27571714 ~ 27581860 (+)
LOC118945773 nek1 coding upstream 229908 27567817 ~ 27571386 (+)
LOC110522774 NA coding upstream 260309 27540020 ~ 27540985 (+)
LOC110521656 LOC106584103 coding downstream 1046 27823914 ~ 27844041 (+)
LOC110521658 LOC106584105 coding downstream 28937 27851805 ~ 27855190 (+)
LOC100136720 zar1 coding downstream 32496 27855364 ~ 27856930 (+)
LOC110521659 LOC106584107 coding downstream 140039 27962907 ~ 27971343 (+)
spata18 spata18 coding downstream 167647 27990515 ~ 27997891 (+)
G2218953 NA non-coding upstream 47023 27748073 ~ 27754271 (+)
G2218907 LOC106560254 non-coding upstream 109110 27690312 ~ 27692184 (+)
G2218823 LOC106584220 non-coding upstream 236117 27563811 ~ 27565177 (+)
LOC110521646 LOC106584219 non-coding upstream 282004 27497328 ~ 27519290 (+)
G2218801 NA non-coding upstream 300135 27500303 ~ 27501159 (+)
G2219026 NA non-coding downstream 27768 27850636 ~ 27850965 (+)
G2218968 NA non-coding downstream 34269 27857137 ~ 27858979 (+)
G2219070 NA non-coding downstream 125645 27948513 ~ 27948725 (+)
G2219075 NA non-coding downstream 160763 27983631 ~ 27986339 (+)
G2218483 NA other upstream 574989 27225374 ~ 27226305 (+)
LOC110521633 LOC106584207 other upstream 1048830 26695809 ~ 26795605 (+)
G2217442 NA other upstream 1193351 26607523 ~ 26607943 (+)
G2217159 LOC106584278 other upstream 1668250 26127054 ~ 26133044 (+)
fip1l1a fip1l1 other downstream 471027 28260830 ~ 28307538 (+)
G2219989 LOC105940532 other downstream 724670 28547538 ~ 28548084 (+)
G2219991 NA other downstream 726161 28549029 ~ 28549478 (+)
G2220253 NA other downstream 1198718 29021586 ~ 29021882 (+)

Expression


Co-expression Network