LOC110521658 (LOC106584105)


Basic Information

Item Value
gene id LOC110521658
gene name LOC106584105
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 27851805 ~ 27855190 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599387.2
TGCACCGCATTCTCTAACACTTTGAGCCTCGAGTTTATTCCTCTGTCATTGGTGACAGCGCGCAATGACGATGCACCGCTAGGGGACCACAGTTTACGCACTGACACCTTCAGGTGGACACCGACTGTGGAGAGCATCTGTACCCTGGTAAGGCGATGGAGAACTCAAGCGTGGTGGTCACTGATGTTCCAACTGCTGGCCTAACAGAATTCCTCAACTTCACCATGAATGACACCATCTCCCGACTCTACGAAGGGTTCACAGATGAGCTCGCCATGACAGAATTACGCGTAACGAACGACCCGGTATCTCTGAAAGTCAACACTCTAAGGACTGCGTTTGCTGCTGGGCTTCGGGCTAAGCTGCCACCGACGGAACCTGCTCACTTGGTGGTTGCTTTTTGGGATTCCCCGCTAAGTCACGGAATCAATGTGTTTGTAGGGATTGTCTTGTGCTTCACCATGCTGGGCCTAGGGTGTACGGTAGATGTGAGTCAGCTTGGGGAACATATCCGCAGACCCATCGGGGTTCTGCTGGCGCTAGTGTGCCAGTTTGTTATCATGCCCCTGGTCGCCTTCCTGCTTGCTTTGGCATTCTCTCTCGACGATGTGGCGGCTATGGCCGTGCTACTGTGTGGCTGCTGTCCAGGAGGAAACCTATCCAACATCATGTCGTTATTAGTGAACGGGGAGATGAATCTGAGCATCATCATGACCATTTCCTCCACGGTCCTAGCGCTGGTTCTGATGCCTCTATGTCTGTGGATATATAGCCGCGCCTGGATCAACACCCCGGTGGTCAACCTGATGCCGTTCGGCGCGATCATCCTCACCCTCTGTAGCACTCTCATCCCAATTGGCCTGGGGGTCGTGCTCCGGTACCGTTACAACCGGGCGGCGGACATCGTTTTAAAGTTGTCTCTGTGGTCTCTGCTGGTGACCCTGGTGATGCTGTTCATCATGACGGGGGCCATGTTGGGGCCAGAGCTGCTGGCCACCATCCCTCCGTCTGTCTACGTGGTAGCTGTCCTGATGCCTGCCTGTGGCTACGCTGCAGGCTACGGCCTGGCCACCCTCTTTGATCTCCCGCCCAACATCCGCAGGACCGTGTCCCTGGAGACCGGGTGCCAGAACGTGCAGCTCTGCACAGCCATCCTGAAGATGGCCTTCCCACCACAGCTGATGGGGGGCATGTATATGTTCCCTCTGCTCTACGCCCTCTTCCAGGCCGCCGAGGCCGGCATCATCATCCTGGCCTACCGGATGTACAGGAAAGAGGTTCTACACAAACCAGACACAATCCCACCGGGGGACAACAGAGATATTGGATATAATAGGTTTGAAGACGAGGATATGGGTTTTGACACTTCTTACGGGGCGGTCACCATGAGTGACCCAAATCTCATCATGCTGGAGCCTTGTCCGGACTCTACTCCTGTTTAGTGCGCATGAGACGACGACGGCCCACCATGGGCGG
>TU2538052
CATCATCCTGGCCTACCGGATGTACAGGAAAGAGGTTCTACACAAACCAGACACAATCCCACCGGGGGACAACAGAGATATTGGATATAATAGGTTTGAAGACGAGGATATGGGTTTTGACACTTCTTACGGGGCGGTCACCATGAGTGACCCAAATCTCATCATGCTGGAGCCTTGTCCGGACTCTACTCCTGTTTAGTGCGCATGAGACGACGACGGCCCACCATGGGCGGAGTGGCGCATAAAGACTTTCAGGTCCGCTCATGACGTCACTATCAAAAAAAATCCCGCAGGGCAGAAACTCTATGGGTGTGTCTCATGACAGGACAGAAGACTGCAACTATTTATGAAGTGAGAGAATGATACAAAATATATGTGAAGCAATTCATAAGACCATAAAAACAATTATGAACAGGTTCATAGAAGTAAAAAAACATATCTGAGCTTACTTCATTCAACATCTTGTGTATGAATCAAAATGGCTGTGAAAATGGATTTCATAAAATATATTCATCCACTCTCGCATCACTGATGCAGGACAACAGCGGTTTACCAAATGTATCATCTCACTTGCTTGTAAAGTCAAACATGATCATGAGCTACATAGCTAACATTGTCAATGATTGTTTTGCATTCAAAGCAAGTATTCAAGTCGAAGGGTACATGTTTTGGTGCCTATAGTTTCAGTTCAAGAAGAAAAATCATGCAGTACAATTCTTCAACAAAACCTAACTACTCCATATCACCATATATGTACGATGACAACCCGTCTGTA
>TU2538051
GGTTTTGACACTTCTTACGGGGCGGTCACCATGAGTGACCCAAATCTCATCATGCTGGAGCCTTGTCCGGACTCTACTCCTGTTTAGTGCGCATGAGACGACGACGGCCCACCATGGGCGGAGTGGCGCATAAAGACTTTCAGGTCCGCTCATGACGTCACTATCAAAAAAAATCCCGCAGGGCAGAAACTCTATGGGTGTGTCTCATGACAGGACAGAAGACTGCAACTATTTATGAAGTGAGAGAATGATACAAAATATATGTGAAGCAATTCATAAGACCATAAAAACAATTATGAACAGGTTCATAGAAGTAAAAAAACATATCTGAGCTTACTTCATTCAACATCTTGTGTATGAATCAAAATGGCTGTGAAAATGGATTTCATAAAATATATTCATCCACTCTCGCATCACTGATGCAGGACAACAGCGGTTTACCAAATGTATCATCTCACTTGCTTGTAAAGTCAAACATGATCATGAGCTACATAGCTAACATTGTCAATGATTGTTTTGCATTCAAAGCAAGTATTCAAGTCGAAGGGTACATGTTTTGGTGCCTATAGTTTCAGTTCAAGAAGAAAAATCATGCAGTACAATTCTTCAACAAAACCTAACTACTCCATATCACCATATATGTACGATGACAACCCGTCTGTAAAATATACAATTGTGTATATGTTTATCAAtgtatattaaaatatatatgatATAGGAAAAA

Function

NR:

description
sodium/bile acid cotransporter 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599387.2 False 1476 mRNA 0.55 3 27851805 27854587
TU2538052 False 775 lncRNA 0.41 1 27854355 27855129
TU2538051 True 724 lncRNA 0.38 1 27854467 27855190

Neighbor

gene id symbol gene type direction distance location
LOC110521656 LOC106584103 coding upstream 7764 27823914 ~ 27844041 (+)
LOC110522775 NA coding upstream 28937 27801294 ~ 27822868 (+)
LOC110521654 cbr4 coding upstream 166535 27672920 ~ 27685270 (+)
LOC110521651 LOC106584225 coding upstream 189457 27608444 ~ 27662348 (+)
LOC118945810 nek1 coding upstream 269945 27571714 ~ 27581860 (+)
LOC100136720 zar1 coding downstream 777 27855364 ~ 27856930 (+)
LOC110521659 LOC106584107 coding downstream 108320 27962907 ~ 27971343 (+)
spata18 spata18 coding downstream 135928 27990515 ~ 27997891 (+)
LOC110521663 rasl11b coding downstream 238780 28093367 ~ 28096082 (+)
fip1l1a fip1l1 coding downstream 406243 28260830 ~ 28307538 (+)
G2219026 NA non-coding upstream 840 27850636 ~ 27850965 (+)
G2219006 NA non-coding upstream 34885 27816721 ~ 27816920 (+)
G2219005 NA non-coding upstream 36038 27815522 ~ 27815767 (+)
G2219003 NA non-coding upstream 40003 27811564 ~ 27811802 (+)
G2219002 NA non-coding upstream 41461 27809664 ~ 27810344 (+)
G2218968 NA non-coding downstream 2550 27857137 ~ 27858979 (+)
G2219070 NA non-coding downstream 93926 27948513 ~ 27948725 (+)
G2219075 NA non-coding downstream 129044 27983631 ~ 27986339 (+)
G2219228 NA non-coding downstream 379346 28233933 ~ 28247795 (+)
G2219302 lnx1 non-coding downstream 481352 28335939 ~ 28337968 (+)
LOC110521646 LOC106584219 other upstream 349125 27497328 ~ 27519290 (+)
G2218483 NA other upstream 625500 27225374 ~ 27226305 (+)
LOC110521633 LOC106584207 other upstream 1099341 26695809 ~ 26795605 (+)
G2217442 NA other upstream 1243862 26607523 ~ 26607943 (+)
G2219989 LOC105940532 other downstream 692951 28547538 ~ 28548084 (+)
G2219991 NA other downstream 694442 28549029 ~ 28549478 (+)
G2220253 NA other downstream 1166999 29021586 ~ 29021882 (+)
LOC110521703 LOC106584150 other downstream 3009237 30863624 ~ 30866524 (+)

Expression


Co-expression Network