LOC100136720 (zar1)


Basic Information

Item Value
gene id LOC100136720
gene name zar1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 27855364 ~ 27856930 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124681.1
AAAATGGCTACATATGTAGACGAGTCGATCGACAGTTATTTCTATTCATCTTACAACCCTTATTCTGGCAGGTATCCCAAACCAAAAGGTGCGGGCTGGAGAAACAATTATTTGTCCAACTATGTGGCTACAGAGGACTATTTTGATAACCACCAGCGCGCGCAACTTAAATCCATCCTGTCTCAAATAAACCCCAATCTTACACCGAGGCTACGGAAAGCAAATACCAAAGATGTCGCTGTGCAGGTCAACCCGAAGAAGGATGTCTCCGTGCAGTGCTCCCTCGGCCCAAGGACTCTCATGACCGGAAAGCGAGACGCTTTGCGCAAGAGGAAACAGGAGGCCCAGGCACCCGGTAGCCCTGCGGGTAGTCCAGGCAGCTCGGTGGGAGGCGTGCTCTACCCTCGCACACTGGCTGTCTACTCGCCTGTAGCTTCTAGGAGACTTGCATATTTTCTAGAAGACGACAAAGGGGGACCGAGTGAAGCACAAACCGGTGACCCACCTGAAACCGTGAAGGCCGGGAAAAAGAATAAAGGCGAAAAGTCTGCAGAGGACAGAACAGAAAAGGCAAAGGACGAAAAGACTGGGCCAGGTAAAAAAACTAGTAAGAAGACTGACCGGTCAGTTACGACCGAGGATGTCAAAGCCGATCAGGATGGATCGGAAGTCAAGACCCGCGTGAGGTTTCAGTTTCTGGAGCAGAAGTATGGGTACTATCACTGCAGAGACTGCAACCTGCGTTGGGAGAGCGCATATGTTTGGTGCGTCCAAGGAACGAGCAAGGTCTACTTCAAGCAGTTCTGTAGAACGTGCCAGAAGTCCTTCAATCCTTACCGGGTCGAGGACATCACCTGCCAGACTTGCAACAAGTCACGCTGCGTGTGCGAAGTGACCCCTCGCCACATTGACCCCAAACGCCCCCACAGACAGGATCTGTGTGGCAGGTGTAAGGGCAAGCGGCTCTCCTGTGACCGCACCTTCAGTTTCAAATACATCATCTAGCAGGAACCTGCACATGAACTGTCACATCTAAGTCCTGCAGCCCAGAGAAGCCCCTGTGCACATTTAAAGAGGCTCTGGGCTGGAGGAGAATACTTTTGGATTTCATTATTTTCTGTTATGCCTTTATTTTCATTATGATAGCAGGAAAACACTTCTGAATGTGAAATAAAGTGGCAATACTCAGCAGTCT

Function

symbol description
zar1 Enables mRNA binding activity involved in posttranscriptional gene silencing. Acts upstream of with a negative effect on translation. Acts upstream of or within negative regulation of translation and positive regulation of oogenesis. Part of protein-containing complex. Is expressed in gonad; liver; oocyte stage I; and oocyte stage II. Orthologous to human ZAR1 (zygote arrest 1).

NR:

description
zygote arrest protein 1

GO: NA

KEGG:

id description
K18762 ZAR1; zygote arrest protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124681.1 True 1195 mRNA 0.50 4 27855364 27856930

Neighbor

gene id symbol gene type direction distance location
LOC110521658 LOC106584105 coding upstream 777 27851805 ~ 27855190 (+)
LOC110521656 LOC106584103 coding upstream 11323 27823914 ~ 27844041 (+)
LOC110522775 NA coding upstream 32496 27801294 ~ 27822868 (+)
LOC110521654 cbr4 coding upstream 170094 27672920 ~ 27685270 (+)
LOC110521651 LOC106584225 coding upstream 193016 27608444 ~ 27662348 (+)
LOC110521659 LOC106584107 coding downstream 105977 27962907 ~ 27971343 (+)
spata18 spata18 coding downstream 133585 27990515 ~ 27997891 (+)
LOC110521663 rasl11b coding downstream 236437 28093367 ~ 28096082 (+)
fip1l1a fip1l1 coding downstream 403900 28260830 ~ 28307538 (+)
gsx2 gsx2 coding downstream 675025 28531955 ~ 28533455 (+)
G2219026 NA non-coding upstream 4399 27850636 ~ 27850965 (+)
G2219006 NA non-coding upstream 38444 27816721 ~ 27816920 (+)
G2219005 NA non-coding upstream 39597 27815522 ~ 27815767 (+)
G2219003 NA non-coding upstream 43562 27811564 ~ 27811802 (+)
G2218968 NA non-coding downstream 207 27857137 ~ 27858979 (+)
G2219070 NA non-coding downstream 91583 27948513 ~ 27948725 (+)
G2219075 NA non-coding downstream 126701 27983631 ~ 27986339 (+)
G2219228 NA non-coding downstream 377003 28233933 ~ 28247795 (+)
G2219302 lnx1 non-coding downstream 479009 28335939 ~ 28337968 (+)
LOC110521646 LOC106584219 other upstream 352684 27497328 ~ 27519290 (+)
G2218483 NA other upstream 629059 27225374 ~ 27226305 (+)
LOC110521633 LOC106584207 other upstream 1102900 26695809 ~ 26795605 (+)
G2217442 NA other upstream 1247421 26607523 ~ 26607943 (+)
G2219989 LOC105940532 other downstream 690608 28547538 ~ 28548084 (+)
G2219991 NA other downstream 692099 28549029 ~ 28549478 (+)
G2220253 NA other downstream 1164656 29021586 ~ 29021882 (+)
LOC110521703 LOC106584150 other downstream 3006894 30863624 ~ 30866524 (+)

Expression


Co-expression Network