fip1l1a (fip1l1)


Basic Information

Item Value
gene id fip1l1a
gene name fip1l1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 28260830 ~ 28307538 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599402.2
ACGTTTACGTCGTGTATAGAAAGGTCCCTATAGAAACGTGTGTGGGTAAAGTAAActgtcactttttttttttttacccttaggTTTTCTTTTACGCATGCTACCGAATACCGATAAGGTGACACGCCGTCCTATTCCgttattattcttttttaaatccCCGTTATATGTAACAGTTTGACATTTGAATATCTGTTCTGTAAAAATCTCAAGTTTGGCGAAATAACTGGATTTTCAATTCGTTGCCAGTTATTGTATTTGATAGAATATCTGTCAAGTTGTGATTCACAGTAGAAGTGACTGGGTTTGGGTAGTCATGTCCGCAGAAATGGACAAAGCAACTGATGCAAGCGGGGGCGATGAAGAAGAATGGTTATATGGAGATGAGAGTGAGGAGAAGGCAGAGGAAGAGGCACCTAATAGTGCAAAGGCCCAGCCGACTGCTGAAGAGGTCCATGAGAATGGAGTAGTGAAGCAGGATACAGGCCAGGAAGATGAAgaaagtgacagtgacagtgaggaTGATGATGACGTGTGTGTAACCATTGGCGATATAAAGACCGGAGGCTCATCTCAGCCTTTCAATGCTTTTGGATCCACACCAGTTAATCTCAACATTAAGGCTGCAGGGAGAACACATGCGTCAGTTGGCCCCAAAGCCAAAGGAGTGGACCTGGATGCACTGGGCAGTGTTAACGGAATCCCTGTGTTGGAGGTCGACATTGAGTCTTTTGAAGAAAAGCCGTGGAGAAAGCCTGGTTCGGACCTCTCGGACTACTTTAACTATGGCTTTAACGAGGACACCTGGAAGACCTACTGTGAGAAACAGAGGAGACTACGCATGGGGTATGAGGGCATGAGCCATGCTTCAGCCACTAAAATCATGGTCCACCAGGGACGTTCAGCCCATGGTGATAGGGATGGGGCCCTTTCCTGCTTTAGGTCTGACTATTCCTCCCCCAGCAACCACTACAATTCAGGCTCCTCCAGTAGAAAGCCGAGCGGCACCATTGATGTTATTGGGGGACAAACTGGTACCATCAGCCGGGTAGAGGGACGAAGACGTCACAATATAGAAGGAAATAACATCCAGGTGCTTTCTGAGCCCCCCTCTGATGCTGAGCCTACTCCCACTAAGATGCCCCCCTTTTTTCCTCCCAACATCCCCCCGCCTCCTTTCCCGCCTCCACCCCACAATGTCAGCTCCGCCCCTCCACTCATTCCTCCACCACGGATCCCCATCAATGTTCCTCCACCTGGCTACCCTCCTGGCGCACCACCTCCTTCTCTGATTCCCACCTTAGACAGTGGACGCTCTGGAGGCTATGATGGTCGCTCAGCTCCACCGTACCCCCCCTTCCCTCCAGGTGtgtaccctcctcctcccccgggTAGCGCAGCAGCCTCCTGGGCCGGGGTATTCGACAGTGCCAAGGCCTGGGAGTACTACGCGCAGCGGGACAACGAGCGAGAGCGCCACAAGGAAAGAGACCGAACCAGAGAACGTGGAcacgagaaagaaagagaaagggagagagagcacaaCCCTTCCTCCCAGGTCGTCAACAGTGAGGAGGATCGGCAccggcacagggactatggggaGAGAGGATATGACCGCCACCACCACGAGAGATCcagcagagagaaagaagagagacaccgagagaagagacacagagacaaagaggagGGGAGACACAAGTCCTCAAGCAGTAGCAGCAGGAGGAGACATGAGAGTGAGGAGGGGGACAGTCATCGAAGACACAAACACAAGAAGGtcaagaggagcagagaggacaaGGAGCCCAGCCAGGAACTCTCTGCTGACCAGGAGAACCAATCAGAGCCCACAGAGTgattctctgtccctctcactagTCAATAGGGGGACCCGCTGTGACCCTCAGGCATTCTGTTTAACATATCAGACACTGGACTGCTCCTCTAATATATTTCAGTTCACTTTGAAGGTGAAAAACCCAAAGCATTGTTTTATGTATACGTTGTATACAACTTGTATATTTTGACTCATCTGAGAGACGTGTTTTGTTTTATTGAATTTAAGAGATATGTTTGGATAAAGGAGCTGACTGGACCTCA
>XM_021599403.2
CGTTTACGTCGTGTATAGAAAGGTCCCTATAGAAACGTGTGTGGGTAAAGTAAActgtcactttttttttttttacccttaggTTTTCTTTTACGCATGCTACCGAATACCGATAAGGTGACACGCCGTCCTATTCCgttattattcttttttaaatccCCGTTATATGTAACAGTTTGACATTTGAATATCTGTTCTGTAAAAATCTCAAGTTTGGCGAAATAACTGGATTTTCAATTCGTTGCCAGTTATTGTATTTGATAGAATATCTGTCAAGTTGTGATTCACAGTAGAAGTGACTGGGTTTGGGTAGTCATGTCCGCAGAAATGGACAAAGCAACTGATGCAAGCGGGGGCGATGAAGAAGAATGGTTATATGGAGATGAGAGTGAGGAGAAGGCAGAGGAAGAGGCACCTAATAGTGCAAAGGCCCAGCCGACTGCTGAAGAGGTCCATGAGAATGGAGTAGTGAAGCAGGATACAGGCCAGGAAGATGAAgaaagtgacagtgacagtgaggaTGATGATGACGTGTGTGTAACCATTGGCGATATAAAGACCGGAGGCTCATCTCAGCCTTTCAATGCTTTTGGATCCACACCAGTTAATCTCAACATTAAGGCTGCAGGGAGAACACATGCGTCAGTTGGCCCCAAAGCCAAAGGAGTGGACCTGGATGCACTGGGCAGTGTTAACGGAATCCCTGTGTTGGAGGTCGACATTGAGTCTTTTGAAGAAAAGCCGTGGAGAAAGCCTGGTTCGGACCTCTCGGACTACTTTAACTATGGCTTTAACGAGGACACCTGGAAGACCTACTGTGAGAAACAGAGGAGACTACGCATGGGGTATGAGGGCATGAGCCATGCTTCAGCCACTAAAATCATGGTCCACCAGGGACGTTCAGCCCATGGTGATAGGGATGGGGCCCTTTCCTGCTTTAGGTCTGACTATTCCTCCCCCAGCAACCACTACAATTCAGGCTCCTCCAGAAAGCCGAGCGGCACCATTGATGTTATTGGGGGACAAACTGGTACCATCAGCCGGGTAGAGGGACGAAGACGTCACAATATAGAAGGAAATAACATCCAGGTGCTTTCTGAGCCCCCCTCTGATGCTGAGCCTACTCCCACTAAGATGCCCCCCTTTTTTCCTCCCAACATCCCCCCGCCTCCTTTCCCGCCTCCACCCCACAATGTCAGCTCCGCCCCTCCACTCATTCCTCCACCACGGATCCCCATCAATGTTCCTCCACCTGGCTACCCTCCTGGCGCACCACCTCCTTCTCTGATTCCCACCTTAGACAGTGGACGCTCTGGAGGCTATGATGGTCGCTCAGCTCCACCGTACCCCCCCTTCCCTCCAGGTGtgtaccctcctcctcccccgggTAGCGCAGCAGCCTCCTGGGCCGGGGTATTCGACAGTGCCAAGGCCTGGGAGTACTACGCGCAGCGGGACAACGAGCGAGAGCGCCACAAGGAAAGAGACCGAACCAGAGAACGTGGAcacgagaaagaaagagaaagggagagagagcacaaCCCTTCCTCCCAGGTCGTCAACAGTGAGGAGGATCGGCAccggcacagggactatggggaGAGAGGATATGACCGCCACCACCACGAGAGATCcagcagagagaaagaagagagacaccgagagaagagacacagagacaaagaggagGGGAGACACAAGTCCTCAAGCAGTAGCAGCAGGAGGAGACATGAGAGTGAGGAGGGGGACAGTCATCGAAGACACAAACACAAGAAGGtcaagaggagcagagaggacaaGGAGCCCAGCCAGGAACTCTCTGCTGACCAGGAGAACCAATCAGAGCCCACAGAGTgattctctgtccctctcactagTCAATAGGGGGACCCGCTGTGACCCTCAGGCATTCTGTTTAACATATCAGACACTGGACTGCTCCTCTAATATATTTCAGTTCACTTTGAAGGTGAAAAACCCAAAGCATTGTTTTATGTATACGTTGTATACAACTTGTATATTTTGACTCATCTGAGAGACGTGTTTTGTTTTATTGAATTTAAGAGATATGTTTGGATAAAGGAGCTGACTGGACCTCA
>XM_036968592.1
CGTTTACGTCGTGTATAGAAAGGTCCCTATAGAAACGTGTGTGGGTAAAGTAAActgtcactttttttttttttacccttaggTTTTCTTTTACGCATGCTACCGAATACCGATAAGGTGACACGCCGTCCTATTCCgttattattcttttttaaatccCCGTTATATGTAACAGTTTGACATTTGAATATCTGTTCTGTAAAAATCTCAAGTTTGGCGAAATAACTGGATTTTCAATTCGTTGCCAGTTATTGTATTTGATAGAATATCTGTCAAGTTGTGATTCACAGTAGAAGTGACTGGGTTTGGGTAGTCATGTCCGCAGAAATGGACAAAGCAACTGATGCAAGCGGGGGCGATGAAGAAGAATGGTTATATGGAGATGAGAGTGAGGAGAAGGCAGAGGAAGAGGCACCTAATAGTGCAAAGGCCCAGCCGACTGCTGAAGAGGTCCATGAGAATGGAGTAGTGAAGCAGGATACAGGCCAGGAAGATGAAgaaagtgacagtgacagtgaggaTGATGATGACGTGTGTGTAACCATTGGCGATATAAAGACCGGAGGCTCATCTCAGCCTTTCAATGCTTTTGGATCCACACCAGTTAATCTCAACATTAAGGCTGCAGGGAGAACACATGCGTCAGTTGGCCCCAAAGCCAAAGGAGTGGACCTGGATGCACTGGGCAGTGTTAACGGAATCCCTGTGTTGGAGGTCGACATTGAGTCTTTTGAAGAAAAGCCGTGGAGAAAGCCTGGTTCGGACCTCTCGGACTACTTTAACTATGGCTTTAACGAGGACACCTGGAAGACCTACTGTGAGAAACAGAGGAGACTACGCATGGGGTATGAGGGCATGAGCCATGCTTCAGCCACTAAAATCATGGTCCACCAGGGACGTTCAGCCCATGGTGATAGGGATGGGGCCCTTTCCTGCTTTAGGTCTGACTATTCCTCCCCCAGCAACCACTACAATTCAGGCTCCTCCAGTAGAAAGCCGAGCGGCACCATTGATGTTATTGGGGGACAAACTGGTACCATCAGCCGGGTAGAGGGACGAAGACGTCACAATATAGAAGGAAATAACATCCAGGTGCTTTCTGAGCCCCCCTCTGATGCTGAGCCTACTCCCACTAAGATGCCCCCCTTTTTTCCTCCCAACATCCCCCCGCCTCCTTTCCCGCCTCCACCCCACAATGTCAGCTCCGCCCCTCCACTCATTCCTCCACCACTGAGGAGGATCGGCAccggcacagggactatggggaGAGAGGATATGACCGCCACCACCACGAGAGATCcagcagagagaaagaagagagacaccgagagaagagacacagagacaaagaggagGGGAGACACAAGTCCTCAAGCAGTAGCAGCAGGAGGAGACATGAGAGTGAGGAGGGGGACAGTCATCGAAGACACAAACACAAGAAGGtcaagaggagcagagaggacaaGGAGCCCAGCCAGGAACTCTCTGCTGACCAGGAGAACCAATCAGAGCCCACAGAGTgattctctgtccctctcactagTCAATAGGGGGACCCGCTGTGACCCTCAGGCATTCTGTTTAACATATCAGACACTGGACTGCTCCTCTAATATATTTCAGTTCACTTTGAAGGTGAAAAACCCAAAGCATTGTTTTATGTATACGTTGTATACAACTTGTATATTTTGACTCATCTGAGAGACGTGTTTTGTTTTATTGAATTTAAGAGATATGTTTGGATAAAGGAGCTGACTGGACCTCAGTTGATTGTTCAAA
>TU2538335
GCCTGGGAGTACTACGCGCAGCGGGACAACGAGCGAGAGCGCCACAAGGAAAGAGACCGAACCAGAGAACGTGGAcacgagaaagaaagagaaagggagagagagcacaaCCCTTCCTCCCAGGTCGTCAACAGTGAGGAGGATCGGCAccggcacagggactatggggaGAGAGGATATGACCGCCACCACCACGAGAGATCcagcagagagaaagaagagagacaccgagagaagagacacagagacaaagaggagGGGAGACACAAGTCCTCAAGCAGCAGCAGGAGGAGACATGAGAGTGAGGAGGGGGACAGTCATCGAAGACACAAACACAAGAAGGtcaagaggagcagagaggacaaGGAGCCCAGCCAGGAACTCTCTGCTGACCAGGAGAACCAATCAGAGCCCACAGAGTgattctctgtccctctcactagTCAATAGGGGGACCCGCTGTGACC

Function

symbol description
fip1l1 Enables RNA binding activity. Predicted to be involved in mRNA polyadenylation and pre-mRNA cleavage required for polyadenylation. Located in nucleoplasm.

NR:

description
pre-mRNA 3'-end-processing factor FIP1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599402.2 False 2103 mRNA 0.50 16 28260830 28307524
XM_021599403.2 False 2099 mRNA 0.50 16 28260831 28307524
XM_036968592.1 False 1779 mRNA 0.48 12 28260831 28307538
TU2538335 True 467 TUCP 0.56 3 28293895 28307326

Neighbor

gene id symbol gene type direction distance location
LOC110521663 rasl11b coding upstream 164748 28093367 ~ 28096082 (+)
spata18 spata18 coding upstream 262939 27990515 ~ 27997891 (+)
LOC110521659 LOC106584107 coding upstream 289487 27962907 ~ 27971343 (+)
LOC100136720 zar1 coding upstream 403900 27855364 ~ 27856930 (+)
LOC110521658 LOC106584105 coding upstream 406243 27851805 ~ 27855190 (+)
gsx2 gsx2 coding downstream 224417 28531955 ~ 28533455 (+)
pdgfra pdgfra coding downstream 247845 28555383 ~ 28576642 (+)
LOC110521672 kit coding downstream 320378 28627916 ~ 28667914 (+)
srd5a3 srd5a3 coding downstream 457825 28765363 ~ 28768625 (+)
tmem165 LOC106584122 coding downstream 461694 28769232 ~ 28774166 (+)
G2219228 NA non-coding upstream 13035 28233933 ~ 28247795 (+)
G2219075 NA non-coding upstream 274491 27983631 ~ 27986339 (+)
G2219070 NA non-coding upstream 312105 27948513 ~ 27948725 (+)
G2218968 NA non-coding upstream 401851 27857137 ~ 27858979 (+)
G2219302 lnx1 non-coding downstream 28401 28335939 ~ 28337968 (+)
G2219327 NA non-coding downstream 63109 28370647 ~ 28371013 (+)
G2219964 NA non-coding downstream 207431 28514969 ~ 28539699 (+)
G2219983 NA non-coding downstream 233627 28541165 ~ 28541401 (+)
G2219984 NA non-coding downstream 234050 28541588 ~ 28541906 (+)
LOC110521656 LOC106584103 other upstream 417132 27823914 ~ 27844041 (+)
LOC110521646 LOC106584219 other upstream 758150 27497328 ~ 27519290 (+)
G2218483 NA other upstream 1034525 27225374 ~ 27226305 (+)
LOC110521633 LOC106584207 other upstream 1508366 26695809 ~ 26795605 (+)
G2217442 NA other upstream 1652887 26607523 ~ 26607943 (+)
G2219989 LOC105940532 other downstream 240000 28547538 ~ 28548084 (+)
G2219991 NA other downstream 241491 28549029 ~ 28549478 (+)
G2220253 NA other downstream 714048 29021586 ~ 29021882 (+)
LOC110521703 LOC106584150 other downstream 2556286 30863624 ~ 30866524 (+)
G2225948 NA other downstream 5264602 33572140 ~ 33604894 (+)

Expression


Co-expression Network