si:dkeyp-117h8.4 (LOC106584130)


Basic Information

Item Value
gene id si:dkeyp-117h8.4
gene name LOC106584130
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 28983183 ~ 28988575 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968588.1
AAAAATATTTTCGTGACTAGCTGGAGTACAGCTACGACCTGAAGGGACTTTTTGCATCAGGTTAGAATATCAATTTAGCTAACCATAAAACCTAAACATTTTCATAACCTAAACCTGTCTCCTAACCTACcccattaattatcctaacctgctacaaaaaaAACTACTTCCGGTCGAAGCTGTATTCCGCTAGTCAGAGCCCTTGACCCGGAGAGAAGCAAACAAATGAGGGGAATACATTTTTTTCGTTTTAGTGTTTTGATTGATAAAGACTGACAACATGAACGACTTCGTAAAAAATAAATTTCAGAACAATGTCAAGATTTACACTGATAATCTGGAGAGAATCGTTGAGAAGTATTCAAAGCTGCATGATGATGGGACTGAGGTGAACCTGGAGGACATAACTCCCCAAGATGTGAGCCGTTGCATGTTCAAGTCAGAGTTGGCGCTGTCAAAGCTGGAATTGTCAAAGAGTGATGCTGGCCTGGCAGAGCTGTCACTAGGAGATATTTCTGAAATACACAGGCCACATGACACCACTGGATACTTCAAGATGGACATCTCATACCACCAGTATGATGCCAACAGTGATTGTGTCGATGAGGGTGCCTTAGACACGAGTGCTGTCACTGCCCCCAGTAACGATTCTGCTATGCATCAGGCTGCCGAGAACAGCCACTGGGTGGACAATTCCAAGGTGAATGAGACTAGAAGTAACCTGTGGGGGGCACCAGAGGAGCAGGATTGGGAGCTGGAGCGCTCTCTGAGCGGTCAACGGAGCACTCTACAGGAGCTGTATCCCAGCATGCTCAGTCAGATAGGAGAGGCCTGGAGGCGCCAACATGTGTCCGACGCGGCTGTAGGGGTGCTAAGGAGGTACCACAGACTCAGGTGGTCGTCTAACAGAAACTTCAACAGCACCCTGAGACCAGCTCACAGAAAACCTGACCTCAACATTAGCCAATCCATCCTCCCAACATCTCAGAACACCACACTGAATGTGAGTAATCCCAAGAGTCCAAAGTTTAACCTCAAAAGGACAAACGGCACCCATCCTCCTCCACAGACCAAGGTCATCCTCCAGAAGTGGCCAGCAGAGAGGCAGTCACCCAGGAAGCGGACAAATTCAGGAAATGGACAACCGTCTCGCTCTTTTCCACTGATGGACTTCTCCTCTTGTCCTTCCTCTGCAGGCTCCAGTCCTGCCGCCTctgctccctcttcccctccctcttcccctccctctgctcctccttcttcccctccctcttcccctccctctgctcctccctcttcccctccctcttcctctgctccctcctcccctccctctgcagcctcctctgctccctcctcccctctctctgcagcctcctctgctccctcctcccctctctctgcagcctcctcccctccctctgcagACTCCTCCCTACAGGAGAACCCTGAGCTAGATGAGGCCCCCCTAAACCAAACCTTCACGGTGTCTATGTCCTCTGCCCCACTCACCAGGGTTAGGTATACTACCCTTGTCTTCAGTCCTGACACAGCAGGAGGGTTGAGCAGCCCATCTCTGAGGTGTGCCGTCCCCAGTCAGAGGATTTTCACAGCAGTACGCCCTGTGGTCAGTATGGACATGTCTTCAGACACAGAGAGGTCTGTCTCAGCAGCACAGAGTCCCTACAGAGCCAGACTGCTGAGCTGGGAAGGCCAGCGTGCATCTCCTAACACTGACCATAGAAGCCTCAAATCAGGCGTTGCTGGATATCAGAGAAACATGGTGACGGTGGAACCCAGATCTTCCCCTGCGTTTTCCCCCTCTTTTCAGAGTCCTCTGATGTCACCCAGGAAGCTTCACCACCTAGACGCCTGCAGTACCTCCCAACTGAAAGTCCACTCATCTCGAGTCACACATCAGGAGTCTACTGCTGGGGCAGCTCAGCCAAAGCTCCAGCGACATTATTCCCTGGATTCATTCTCCCCATCCATCAGTCTAAGGAACTCCACTAAGCAGATCGATGAGGACTTCCAGAAGCTTTACCACAAGCTTGTGTGTCAGGGCAAATACCACAAGCTTGTCTGTCAGGGCAAATCGGTCCCCTCCTGTCGCATGtgtgagaggagagcagagaccACCAGAGGCCCCTCCTCCTCTGCTCTGGCTGCCCTGGCCCTGTCTCCTCACCACTCTGTCATGAGGAAGCGTCGCAGGGAGCTGGTCCAGAAACATTCCCCAGAGTCCAAACGCTTCAGAGACAACTCCTGCGTGTACTCACCAGGATCTCTCCGCCAGAGGAGAGAAATGATCAGGTGCCAGAATCGCTTAGACAGCCACTTGTCCTCCACGCATCTATCCTCCATCCAGAGGGACATCTCCTGTGACTCCCACACCTGGAGCCCGCATAGGGCCAGCCTGTTTCAGATCCGCCACAGCCCCCATCACCACTCAGACGCAGCAGTCAGGAAAGCTGCAGCCTCCTGGTCTGGCCTGCATGTTGATCAGCCCTCTCCTGCTTGTAGAGCGAAATACAACAGATTTGTTGGGATTCATCCAGGAAAGTCACCTGTCAAGGCAGAGTGCCAATGTGGCTGTTCGCCAAGTTTCTCTAGGAGACAGCTTCTGTATAAATGATGTCAGCCCACAGAAAGGCCTGCACCTCTAGATGATATGACTGTTAAATATGTTGCTGTTTTATATCAGCTTTTAAAACATGTTCCAATGACTCATTTGTTACAGTGTTCCCACGAGGTCTTTTTTTATGCCCCCTTGGGATAACAATAGCTGTTTTTGGAACAGATAGATGCATAAAATACATACTAAATGACTTTGTAATAAAACAAGTTTGAAAACTT

Function

NR:

description
mucin-5AC-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968588.1 True 2856 mRNA 0.51 11 28983183 28988575

Neighbor

gene id symbol gene type direction distance location
cracd kiaa1211 coding upstream 5506 28949396 ~ 28977677 (+)
cep135 cep135 coding upstream 38412 28925986 ~ 28944771 (+)
exoc1 exoc1 coding upstream 57413 28911565 ~ 28925770 (+)
tmem165 LOC106584122 coding upstream 209017 28769232 ~ 28774166 (+)
srd5a3 srd5a3 coding upstream 214558 28765363 ~ 28768625 (+)
paics LOC106584129 coding downstream 4033 28992608 ~ 29001492 (+)
LOC100135939 LOC106584136 coding downstream 141822 29130397 ~ 29153704 (+)
LOC110521691 LOC106584140 coding downstream 296326 29284901 ~ 29303940 (+)
LOC110521693 LOC106584143 coding downstream 609975 29598550 ~ 29604909 (+)
LOC110521700 NA coding downstream 1547661 30536236 ~ 30548668 (+)
G2220235 aasdh non-coding upstream 2428 28980492 ~ 28980755 (+)
G2220229 NA non-coding upstream 25698 28957135 ~ 28957485 (+)
G2220225 NA non-coding upstream 28728 28954224 ~ 28954455 (+)
G2220224 NA non-coding upstream 29233 28952593 ~ 28953950 (+)
G2220223 NA non-coding upstream 30747 28952083 ~ 28952436 (+)
G2220242 NA non-coding downstream 15045 29003620 ~ 29003835 (+)
G2220664 LOC101268910 non-coding downstream 38976 29027551 ~ 29029017 (+)
G2220683 LOC106584134 non-coding downstream 81731 29070306 ~ 29071355 (+)
G2220687 NA non-coding downstream 88422 29076997 ~ 29077996 (+)
G2220726 NA non-coding downstream 129416 29117991 ~ 29118190 (+)
G2219991 NA other upstream 433705 28549029 ~ 28549478 (+)
G2219989 LOC105940532 other upstream 435099 28547538 ~ 28548084 (+)
fip1l1a fip1l1 other upstream 675857 28260830 ~ 28307538 (+)
LOC110521656 LOC106584103 other upstream 1139485 27823914 ~ 27844041 (+)
LOC110521646 LOC106584219 other upstream 1480503 27497328 ~ 27519290 (+)
G2220253 NA other downstream 33011 29021586 ~ 29021882 (+)
LOC110521703 LOC106584150 other downstream 1875249 30863624 ~ 30866524 (+)
G2225948 NA other downstream 4583565 33572140 ~ 33604894 (+)
LOC110521757 NA other downstream 6193394 35181902 ~ 35190209 (+)
G2228777 NA other downstream 6529659 35518234 ~ 35519242 (+)

Expression


Co-expression Network