LOC110521700


Basic Information

Item Value
gene id LOC110521700
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 30536236 ~ 30548668 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040924.1
AGGAGACAGATGGTGTGTGAGTAGAACCATCTCTAGCCACCTCGTTATGTCAGTGAGTGACATAACAAGATAAAAACTTTTGAAATGGCACGTTGTGTATTCTGCTATGCTATCTCTCAACGCTGTCAGTCTCTTCAGCCTCTTTCTGAGTACTAAAGGCCCTGAAGATCATCTCTCCCAGAGTCTGGAAACTCTCAGAAGTCTAATGCCACCTGAATCCCCATCTATCAGCCTGTGAGGAGTTCTTCCATTTTGTCTTTGATGATATCTTCTTGCTGCTAGTGGGATGTCTTCAGGACGAGCAGGAGGTTTTCATCTTTTCCTTTTTGGAGCGGTCCGTGCGGAGGTGCTCAACATCATTTGAAGGTAACTCAAAGGTTGTTCTCATGAAGCCTTTGGAAGATGGCTTCCAGTGAACAGTTGTGAGCTTCGGCTGAGGTCCCAAAAACAAGAATGCCGCAATCACTGAAGTTTTTCACTACTGGGATTCCATGGAGCACCTGCTGAATGATGTGTTGGAAAACTTCAGCAGATAATGAGATTCTGAAAATTAATGCTTGTACCCATGTATGCTTAATTAATGCTTAGTCCCATGTATGTTAAGAAAGTTGTGATATACCTCGACTCTGGAGCAAGTTCCAACTGGTGGTATCCAGTCCAGTCATATTCAAGGAACTATCTTTCTAGGGGTTCTGATGCTTTTagattttatttacattttgatAACATATCTACATTATTTCACTTTTTAATCCGTATAATATTGCTTACTAGTTGTTGTCCAATGAATTctgtaaccactccctcttcaaACCAGGGTTGATTGGAAAAAGCTGTTTgaaagaggacattgtattatcatgtctttgtactccctgacgaagaCCATGCAGCCGAAACACGTCAGAGTTTTTAATCTTTGTTtcc

Function

NR:

description
uncharacterized protein K02A2.6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040924.1 True 927 mRNA 0.41 5 30536236 30548668

Neighbor

gene id symbol gene type direction distance location
LOC110521693 LOC106584143 coding upstream 931327 29598550 ~ 29604909 (+)
LOC110521691 LOC106584140 coding upstream 1232296 29284901 ~ 29303940 (+)
LOC100135939 LOC106584136 coding upstream 1382532 29130397 ~ 29153704 (+)
paics LOC106584129 coding upstream 1534744 28992608 ~ 29001492 (+)
si:dkeyp-117h8.4 LOC106584130 coding upstream 1547661 28983183 ~ 28988575 (+)
LOC110521701 LOC106584149 coding downstream 298013 30846681 ~ 30850528 (+)
si:ch211-117l17.6 NA coding downstream 310170 30858838 ~ 30860485 (+)
LOC110521703 LOC106584150 coding downstream 314956 30863624 ~ 30866524 (+)
rgs2 LOC106584094 coding downstream 330018 30878686 ~ 30880955 (+)
LOC110521706 NA coding downstream 373225 30921893 ~ 30926393 (+)
G2222290 NA non-coding upstream 123926 30412082 ~ 30412310 (+)
G2222275 NA non-coding upstream 132112 30403917 ~ 30404124 (+)
G2222073 NA non-coding upstream 133464 30402562 ~ 30402772 (+)
G2222064 NA non-coding upstream 149796 30385967 ~ 30386440 (+)
G2222057 NA non-coding upstream 178503 30357493 ~ 30357733 (+)
G2222519 NA non-coding downstream 12401 30561069 ~ 30561526 (+)
G2222527 NA non-coding downstream 16768 30565436 ~ 30565649 (+)
G2222542 NA non-coding downstream 25849 30574517 ~ 30574827 (+)
G2222559 NA non-coding downstream 38368 30587036 ~ 30587235 (+)
G2222563 NA non-coding downstream 44120 30592788 ~ 30593126 (+)
G2220253 NA other upstream 1514354 29021586 ~ 29021882 (+)
G2219991 NA other upstream 1986758 28549029 ~ 28549478 (+)
G2219989 LOC105940532 other upstream 1988152 28547538 ~ 28548084 (+)
fip1l1a fip1l1 other upstream 2228910 28260830 ~ 28307538 (+)
LOC110521656 LOC106584103 other upstream 2692538 27823914 ~ 27844041 (+)
G2225948 NA other downstream 3023472 33572140 ~ 33604894 (+)
LOC110521757 NA other downstream 4633301 35181902 ~ 35190209 (+)
G2228777 NA other downstream 4969566 35518234 ~ 35519242 (+)
LOC110521768 sirt5 other downstream 5144642 35693310 ~ 35735400 (+)

Expression


Co-expression Network