LOC110521706


Basic Information

Item Value
gene id LOC110521706
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 30921893 ~ 30926393 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040965.1
ATCTGAATGGAAACCCCTGTATTGATATGAATTGGAAATAATTAAATGAATGGTGAGTAACGCCACGCTGGATGTTTGAAATATGAGTAGGTATGATTAACTGGGTATGATTTTTCTactcattgatgtatacatttGTATTACCTGTTCATTTCCCACTGTGATTGGCTCTATGCAAGAATATTGAGAAGCGGGCACTCTAGAGAGGGTGTGCTGAATTTGGAACTCCATTATCAACGACTCCTGAAGAAAGCTGGGAAATAATTGTGCCAAAATAGAAAGTTGCACTGTATCACATATAGAACCAACCTAGCGATATCAGTCATGACTTTGTGTCCTCATACACAAAGGACTGGCTGGAACCAAGTGTCCATATCCTACATGTAGTACATTCGTTTTTACAGAACAGACAATATAATGGTTAATTCCAGACTCTTCAGTGGGGTTGAAGAATATTGTACATGGGGCATTGATCTTGAAGTAGATCGCGCAACTATCCACTGACTACCAGACATCAGGGCTAGAGGCATATCACGCTCTGACGCTGCACTTCCTGAGGAAAAACACTGCCTTCTCCTACAAGGGAATGCATGCAAGATCATACCTTGCATTACAATGAGAACAGTGGATTGACGCAGGCAGTGAGAAAAGACAGCCTGCTCAGGTACTCCCTCTCCTTCCCAAATGCCAAGAAGGGTGGCTACACAATTCAGCCAGTGAAGACCAAAACCTACGACTATGTTGCCAAAATAGTCAAAGCTGTGGTTTTGGCCCCCTGGAGGAGGAGTCAGACCCCAGGATCCTGGAATCACCTTCACCACTCTGTAGCCAGTTTTAGCGTCCCATGAAGGACCAGGCAGTGAGGGAGTAAATATGTTGTTTTAAGGCTGCTCGCACACCATGAGCACCTGTCTTCACACATTTTAAATTACATtcgagtcatttagcagatgtagTTCTCCAGaccgacttacagtagtgagtgctaagattgttttcttactttttcataCTGGAATTTCGAGTCTTTGGCTGAAATGTAGCAGTTTACACTAATCGTACAGTGGTGCAGTGATTTCTTTATTGATTCGTCTGGCTTTGTGGAAGGTTCTGGATTTGTGGAGTGATGAGATGCCTTGGCACTTGACACTGCAGACCTTGCTCGAAATGTTGACTGTTTTGTGAATTGTTGGTGTTCGTTATTGACAGTGAACCATACCAGTTACAGCGTCCTGTCCTCGCCCCTTCTACTTGTGCTGCCTGTGTGACTGAGCCCCTTTTTCATCAGGGAGTACCTCCACGTGTGGGGAATGCTGATTGGTAATATGGTGTAGTGGAAATTCACCACTAAGGACTATATCTCAATGTAAATGAATTCATCTTTATTATCACGGCCGGAGAGGTTCACAAACTCATTCCAATCTTATTAATGAAAACACTGAAAAGGGTGTTCCCTCTCAGTCCTTTTATTCTGCTATACAATCAAGTCATATAAGCATGATATACATTATTCATTATTAGCATTGGTTCCTGCATGTGACTGAACATTGTTATGGGCGTACTGCCAATTGGTCTGAGGTCACATTCACCTACACGAACCAAGGAGATGCTGTTTGCAATTCAATGCTAGCTTTTCAGACAACATTTTCCCTCACAATGGCTTGCTATTTTGCTACTGAGAATACACATCTGCTAGAGTAGATCTGTACCtgccattatttttatttattttttacagagTTGTTCTCCCTCTGCTCATGTTTACTACCCATTACTGAGCTGCGATAATTGAATAAAAGGAGCACTTTTATTCTGTAACAGGACAGTGGGCTCCTTGAGCCTTCTCACACCAATCGCTGCACGTCTGCTGCTGCGCCAAGCTTTCAGTGGAACTTGTTCAtcca
>XR_002473182.2
cttgcaaccatacagttagtccaacgctctaaccacctgattacattgcactccacgaggagactgcctgttacgcgaatgcagtaagaagccaagATCATACCTTGCATTACAATGAGAACAGTGGATTGACGCAGGCAGTGAGAAAAGACAGCCTGCTCAGGTACTCCCTCTCCTTCCCAAATGCCAAGAAGGGTGGCTACACAATTCAGCCAGTGAAGACCAAAACCTACGACTATGTTGCCAAAATAGTCAAAGCTGTGGTTTTGGCCCCCTGGAGGAGGAGTCAGACCCCAGGATCCTGGAATCACCTTCACCACTCTGTAGCCAGTTTTAGCGTCCCATGAAGGACCAGGCAGTGAGGGAGTAAATATGTTGTTTTAAGGCTGCTCGCACACCATGAGCACCTGTCTTCACACATTTTAAATTACATtcgagtcatttagcagatgtagTTCTCCAGaccgacttacagtagtgagtgctaagattgttttcttactttttcataCTGGAATTTCGAGTCTTTGGCTGAAATGTAGCAGTTTACACTAATCGTACAGTGGTGCAGTGATTTCTTTATTGATTCGTCTGGCTTTGTGGAAGGTTCTGGATTTGTGGAGTGATGAGATGCCTTGGCACTTGACACTGCAGACCTTGCTCGAAATGTTGACTGTTTTGTGAATTGTTGGTGTTCGTTATTGACAGTGAACCATACCAGTTACAGCGTCCTGTCCTCGCCCCTTCTACTTGTGCTGCCTGTGTGACTGAGCCCCTTTTTCATCAGGGAGTACCTCCACGTGTGGGGAATGCTGATTGGTAATATGGTGTAGTGGAAATTCACCACTAAGGACTATATCTCAATGTAAATGAATTCATCTTTATTATCACGGCCGGAGAGGTTCACAAACTCATTCCAATCTTATTAATGAAAACACTGAAAAGGGTGTTCCCTCTCAGTCCTTTTATTCTGCTATACAATCAAGTCATATAAGCATGATATACATTATTCATTATTAGCATTGGTTCCTGCATGTGACTGAACATTGTTATGGGCGTACTGCCAATTGGTCTGAGGTCACATTCACCTACACGAACCAAGGAGATGCTGTTTGCAATTCAATGCTAGCTTTTCAGACAACATTTTCCCTCACAATGGCTTGCTATTTTGCTACTGAGAATACACATCTGCTAGAGTAGATCTGTACCtgccattatttttatttattttttacagagTTGTTCTCCCTCTGCTCATGTTTACTACCCATTACTGAGCTGCGATAATTGAATAAAAGGAGCACTTTTATTCTGTAACAGGACAGTGGGCTCCTTGAGCCTTCTCACACCAATCGCTGCACGTCTGCTGCTGCGCCAAGCTTTCAGTGGAACTTGTTCAtcca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040965.1 False 1904 mRNA 0.43 3 30921893 30926393
XR_002473182.2 True 1403 mRNA 0.44 3 30922879 30926393

Neighbor

gene id symbol gene type direction distance location
rgs2 LOC106584094 coding upstream 40938 30878686 ~ 30880955 (+)
LOC110521703 LOC106584150 coding upstream 55369 30863624 ~ 30866524 (+)
si:ch211-117l17.6 NA coding upstream 61408 30858838 ~ 30860485 (+)
LOC110521701 LOC106584149 coding upstream 71365 30846681 ~ 30850528 (+)
LOC110521700 NA coding upstream 373225 30536236 ~ 30548668 (+)
LOC110521707 LOC106584154 coding downstream 9062 30935455 ~ 30967780 (+)
LOC110521708 LOC106584155 coding downstream 52512 30978905 ~ 30989561 (+)
LOC118945898 NA coding downstream 242513 31168906 ~ 31168960 (+)
LOC110521713 LOC106584160 coding downstream 717441 31643834 ~ 31657204 (+)
LOC110521714 LOC106584162 coding downstream 736785 31663178 ~ 31685070 (+)
G2222919 NA non-coding upstream 17768 30903850 ~ 30904125 (+)
G2222883 LOC106584153 non-coding upstream 21782 30886628 ~ 30900111 (+)
G2222914 NA non-coding upstream 48841 30872600 ~ 30873052 (+)
G2222860 NA non-coding upstream 119433 30802158 ~ 30802460 (+)
G2222780 NA non-coding upstream 163622 30758014 ~ 30758271 (+)
G2222939 NA non-coding downstream 7187 30933580 ~ 30933949 (+)
G2222950 NA non-coding downstream 18970 30945363 ~ 30945954 (+)
G2222931 NA non-coding downstream 41676 30968069 ~ 30969884 (+)
G2222967 NA non-coding downstream 43959 30970352 ~ 30970670 (+)
G2223075 NA non-coding downstream 46628 30973021 ~ 30973349 (+)
G2220253 NA other upstream 1900011 29021586 ~ 29021882 (+)
G2219991 NA other upstream 2372415 28549029 ~ 28549478 (+)
G2219989 LOC105940532 other upstream 2373809 28547538 ~ 28548084 (+)
fip1l1a fip1l1 other upstream 2614567 28260830 ~ 28307538 (+)
G2225948 NA other downstream 2645747 33572140 ~ 33604894 (+)
LOC110521757 NA other downstream 4255576 35181902 ~ 35190209 (+)
G2228777 NA other downstream 4591841 35518234 ~ 35519242 (+)
LOC110521768 sirt5 other downstream 4766917 35693310 ~ 35735400 (+)
LOC110521770 igfbp-1a2 other downstream 4874639 35800643 ~ 35805071 (+)

Expression


Co-expression Network