Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110521733 |
| gene name | LOC106584181 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_050570.1 |
| NCBI id | CM025857.1 |
| chromosome length | 46327593 |
| location | 33040140 ~ 33378427 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| receptor-type tyrosine-protein phosphatase F-like isoform X10 |
| id | description |
|---|---|
| K05695 | PTPRF, LAR; receptor-type tyrosine-protein phosphatase F |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036968461.1 | False | 7237 | mRNA | 0.54 | 38 | 33040140 | 33378427 |
| XM_036968462.1 | False | 7225 | mRNA | 0.54 | 37 | 33040140 | 33378427 |
| XM_036968463.1 | False | 7219 | mRNA | 0.54 | 37 | 33040140 | 33378427 |
| XM_036968464.1 | False | 7203 | mRNA | 0.54 | 37 | 33040141 | 33378427 |
| XM_036968465.1 | False | 7191 | mRNA | 0.54 | 36 | 33040141 | 33378427 |
| XM_036968467.1 | False | 7173 | mRNA | 0.54 | 35 | 33040141 | 33378427 |
| XM_036968466.1 | False | 6911 | mRNA | 0.53 | 36 | 33040142 | 33378427 |
| XM_036968468.1 | False | 6866 | mRNA | 0.53 | 34 | 33040142 | 33378427 |
| XM_036968469.1 | True | 6899 | mRNA | 0.53 | 35 | 33040142 | 33378427 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110521731 | LOC106584179 | coding | upstream | 442640 | 32491177 ~ 32597500 (+) |
| LOC110520992 | LOC105011758 | coding | upstream | 560516 | 32393227 ~ 32479624 (+) |
| LOC110521730 | LOC106584176 | coding | upstream | 769030 | 32254220 ~ 32271110 (+) |
| LOC118945809 | NA | coding | upstream | 885769 | 32153114 ~ 32154371 (+) |
| LOC110521727 | NA | coding | upstream | 887317 | 32139755 ~ 32152823 (+) |
| LOC110521735 | LOC106584183 | coding | downstream | 2982 | 33381409 ~ 33430621 (+) |
| LOC110521738 | LOC106584184 | coding | downstream | 55658 | 33434085 ~ 33557781 (+) |
| LOC110521740 | LOC106584187 | coding | downstream | 284002 | 33662429 ~ 33664964 (+) |
| LOC110520955 | rn138 | coding | downstream | 1131617 | 34510044 ~ 34513894 (+) |
| LOC110521747 | LOC106584197 | coding | downstream | 1158417 | 34536844 ~ 34685436 (+) |
| G2225363 | NA | non-coding | upstream | 180122 | 32834445 ~ 32860018 (+) |
| G2225263 | NA | non-coding | upstream | 329850 | 32709970 ~ 32710290 (+) |
| G2225251 | NA | non-coding | upstream | 338376 | 32700944 ~ 32701764 (+) |
| G2225246 | NA | non-coding | upstream | 341423 | 32698487 ~ 32698717 (+) |
| G2225178 | NA | non-coding | upstream | 384279 | 32655385 ~ 32655861 (+) |
| G2225927 | NA | non-coding | downstream | 163793 | 33542220 ~ 33542607 (+) |
| G2225928 | NA | non-coding | downstream | 164789 | 33543216 ~ 33543505 (+) |
| G2225985 | NA | non-coding | downstream | 251592 | 33630019 ~ 33630398 (+) |
| G2225989 | NA | non-coding | downstream | 259980 | 33638407 ~ 33638732 (+) |
| G2225992 | NA | non-coding | downstream | 262805 | 33641232 ~ 33642692 (+) |
| LOC110521703 | LOC106584150 | other | upstream | 2173618 | 30863624 ~ 30866524 (+) |
| G2220253 | NA | other | upstream | 4018258 | 29021586 ~ 29021882 (+) |
| G2219991 | NA | other | upstream | 4490662 | 28549029 ~ 28549478 (+) |
| G2219989 | LOC105940532 | other | upstream | 4492056 | 28547538 ~ 28548084 (+) |
| fip1l1a | fip1l1 | other | upstream | 4732814 | 28260830 ~ 28307538 (+) |
| G2225948 | NA | other | downstream | 193713 | 33572140 ~ 33604894 (+) |
| LOC110521757 | NA | other | downstream | 1803542 | 35181902 ~ 35190209 (+) |
| G2228777 | NA | other | downstream | 2139807 | 35518234 ~ 35519242 (+) |
| LOC110521768 | sirt5 | other | downstream | 2314883 | 35693310 ~ 35735400 (+) |
| LOC110521770 | igfbp-1a2 | other | downstream | 2422605 | 35800643 ~ 35805071 (+) |
