LOC110521758 (LOC106584076)



Basic Information


Item Value
gene id LOC110521758
gene name LOC106584076
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 35197810 ~ 35205192 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021599596.2
GCAGCGCACACTAAATCGAGTAGTCTTCGTGTTTCCTCCCCCAGGGATTAAGGAGGGCGATGCCCACCCGGTGCGCCACAGAGCTGCACTCACCGCCACGGTGACAACGAACCATACCGGAGCCTAAGTCGGACTGAACCCCGCAAAACGCTGCGTTATACCGAGCCCTCATTGGATACTCTGCACCCCACCGTCTCTCCCACATTCTGACACTGCACTCGCTGCACATTCTCTGCGAAATAGGAGATTCCAGCGAGGATTTTCCCTCTCCAACCACTTTTTGTGGAATTCCGAAGACCAAATGCTTGTGTGATTTGAGGAGGACGTTGAGAATAAGCGACATTTCTTGTGATCAATTTTTTCGAATCCTATTAGTTCTTTTAAAAGATCTATTGCTCCACATCTTGCTCTCcgcttccccctctcccccaagGTCACTGCTCATCTACGCCACTGCTGTGCGTTAGCAGAGCAGAGATGACGACCGAGCTCTCTCAGCAGCAGCTGGACCCGCCGCCTCCCCTGAGGTCCAGCCCGACCTCCGGAGTCCTGCACCCCGCCATGATGAGCCCACAGACCGAGGTGGACAGTTCTTTAGCCGGGGCCAAAAGCAAGAAGGCGAGCTCCGGCCTGAGGCGACCAGAGAAGCCTCCCTACTCCTACATTGCGCTCATCGTCATGGCGATACAGAGTTCACCGACTAAGAGGCTGACGCTCAGTGAGGTCTATCAGTTCCTCCAGGCCCGGTTCCCCTTCTTCAGAGGATCCTACCAGGGCTGGAAGAACTCCGTCCGGCACAACCTCTCCCTGAACGAGTGCTTCATCAAGCTGCCCAAAGGGCTAGGCAGGCCGGGGAAAGGCCACTATTGGACCATCGACCCGGCCAGCGAGTTCATGTTCGAAGAGGGCTCGTTCCGCCGCAGACCCAGGGGCTTCCGGAGAAAATGCCAAGCTCTGAAGCCCATTTACCGGATGATGAACGGGATAGGCTTCGGTACGTCCATTTTACCGCAGAACTTTGATTTTCAGGCGCCCACTGGGTCTCTGGCGTGTCATAGCAACGGTTACAACTTGGACATGATGACCAACTCCATGGCCGGTGGCTACGACGGACTGAGCGGTGGCCACCACGTACCTCACATGTCCCCGAGCCCCGGGTCCACATATATGGCCAGCTGTCCGGTAACGTCCAACGGGGACTACGGTGGACCGGACAGTAGCAGCAGCCCTGTGCCCTCGTCTCCGGCTATGGCCAGCGCTTTGGACGGTCATTCTCCATACGCCAGTAGCGCCGGACACTGGGCGTCTCCCGGCGGCTCCCCGTACATAAAGCAGCAGCCTCTGGTCTCCAGCAGCTCGGCGTCCTCTGGGCTAAATTCCGGCATGTCCCCCTATTCCCTGGAGCAGAGCTACCTCCACCAGAACGCCAGGGACACCGCCGATATCTCAGTGGGGATCCCTCGCTACCAGAGCCACTCCTCACCCGTGTGTGACAGGAAGGATTTTCTCCTGAACTTTAACGGCATCTCCTCGTTTCGTCCTTCAGCCAGCGGATCTTactatcatcatcaccaacatcacCAAAGCCTTTGTCAAGACGTCAAACCGTGCGTGATGTGAGCGCCTCATGGAGTATGCGTAATGGCTCCAAACCGTGCTCCGGAGATGAGAATCTGATCAACACCAAATCAAACAATTTAAACTGATTCCATGAGAGTTAAAAGGCAAATAAATTGGCTAATATTTCTGATGAGAATGAACAAGAGGGACGAAGGGCTAGCCTATTTCTGAGAAGCCGGAAAACTTCTCACATCAGGGTATATTTACAGTGGCCTTCGTTGTCTTGATAAGCCTAAAGCAGTTGTTGCATAAGTATTATGCAACAACTGTTTCCGAAATGAAGGAAGGCACCAAATCTTCTGACAATATAACCAAGTTTTTTTTTCAAAATAAGTTTCAAAACGACTAATGTGTTTGCTGTCATTAACTGTGCAAACAAATACCTTATATTTTATGTAACTAGGCCTCTGTTCCGATATAGGCCAATAAAGTTAAATGcagcatacacatacacaaagcTTCTTTATAACAAATTGAAACACATTTGCACTTGTTGTATACCCTTTGAGATTTGCTTAATTTTGTCATGAAGTGTTTCAATAAAACAGATGTATTTTAGGCTACACCTGCCTGCTTGACTCTCTCAgaaatatatttgacatttgtaagAAATATAAATACACTGCTAGAGATGCACTGTAGTGGCTTGTAAAACCAGGTTAGAGGAGAGTTGGAGCGCAGCCTACTGTTGATTGAAAGATTGTAGTGGGTGGATTGGATGTTAACCGCAAATTCAGCTCCGGGTTAGAGAGTGAGGTGGACAAGACTCCAATGAACATTCAACCATTTATTTTAGCATCAAATAACGTCCCAGCACAGAGGGCAAACATAAATgagaactacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaatatatataactgtatttttttgtgaagaatcaacaaca

Function


NR:

description
forkhead box protein F2-like

GO: NA

KEGG:

id description
K09399 FOXF; forkhead box protein F

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021599596.2 True 2573 mRNA 0.50 2 35197810 35205192

Neighbor


gene id symbol gene type direction distance location
LOC110521756 LOC106584201 coding downstream 28540 35166887 ~ 35169270 (-)
LOC110521753 LOC106584200 coding downstream 439664 34742934 ~ 34758146 (-)
LOC110521746 LOC106584195 coding downstream 714235 34398316 ~ 34483575 (-)
LOC110521745 LOC106584194 coding downstream 818076 34329362 ~ 34379734 (-)
LOC110521744 LOC106584192 coding downstream 1278007 33835382 ~ 33919803 (-)
LOC110521759 LOC106584097 coding upstream 11516 35216708 ~ 35219689 (-)
irf4l irf4 coding upstream 288762 35493954 ~ 35500738 (-)
LOC110521763 LOC106584075 coding upstream 294796 35499988 ~ 35514392 (-)
LOC110520993 LOC106584074 coding upstream 340384 35545576 ~ 35577047 (-)
phactr1 LOC106584070 coding upstream 437205 35642397 ~ 35717855 (-)
G2228422 NA non-coding downstream 5174 35192424 ~ 35192636 (-)
G2228421 NA non-coding downstream 5617 35191957 ~ 35192193 (-)
G2228417 NA non-coding downstream 8225 35188643 ~ 35189585 (-)
G2228407 NA non-coding downstream 24587 35173009 ~ 35173223 (-)
G2228410 NA non-coding downstream 24929 35172589 ~ 35172881 (-)
G2228432 NA non-coding upstream 7785 35212977 ~ 35213208 (-)
G2228480 NA non-coding upstream 56474 35261666 ~ 35261896 (-)
G2228501 NA non-coding upstream 69699 35274891 ~ 35275139 (-)
G2228608 NA non-coding upstream 139666 35344858 ~ 35345128 (-)
G2228611 NA non-coding upstream 140855 35346047 ~ 35346268 (-)
G2227801 NA other downstream 655191 34542217 ~ 34542619 (-)
G2227478 NA other downstream 874155 34311142 ~ 34323655 (-)
G2226745 NA other downstream 1387916 33809379 ~ 33809894 (-)
LOC110521741 LOC106584188 other downstream 1495367 33686041 ~ 33710890 (-)
G2226519 NA other downstream 1567916 33629122 ~ 33629894 (-)
G2229175 NA other upstream 593612 35798804 ~ 35799357 (-)
G2229647 NA other upstream 1007954 36213146 ~ 36214385 (-)
LOC110521777 LOC106584061 other upstream 1315160 36520352 ~ 36541228 (-)
LOC110521791 LOC106584041 other upstream 2296018 37498832 ~ 37523064 (-)
G2232820 NA other upstream 3560230 38765422 ~ 38767903 (-)

Expression



Co-expression Network