irf4l (irf4)


Basic Information

Item Value
gene id irf4l
gene name irf4
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 35493954 ~ 35500738 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599602.2
TGACCCCATGGTCTCCTGCCTGCTCAGCCCACGCCAGACAGCTGTCACTCACCCAATGCCCAGCCAATCACCGTTTGACTTCAATATATATAGATTGCTCCACTTTCCAGCGCTGCGGGTGTCTTTTTCTGCGACTGACGTTCGCGAGGGTTTCCCCTGCCGTTTACGGGAGGCATGCGCAGCATGAAGGTTCACAGACACGAAAAGCCCAGCATCCACGCTCGACTTCATTTCGCCCCGCCCCCATCTACAACTGATTTAAGTTGAGTTGTCACGCTGCATTATGATCTTTCAAGACTGATTGATTTCAAAACTCAAAGGGGTTTCGAGTTTCAGCGAGATGAACCCTGAGTCGGACTACGGGATGTCTACGGTGAGCTGTGGGAACGGAAAGCTCCGCTCGTGGCTAATCGAGCAGGTGGATACCGGGAAGTACCAGGGCCTGGTCTGGGAGAACGAAGAAAAGAGCATCTTCAGGATACCATGGAAGCACGCGGGCAAGCAGGACTACAACCGGGACGAGGATGCCGCTCTCTTCAAGGCTTGGGCGCTGTTTAAAGGCAAGTTTCGGGAGGGCATCGACAAACTGGACCCGCCAACGTGGAAGACTCGCCTGCGGTGCGCGCTCAACAAAAGTAACGACTTCGAGGAGCTCGTGCAGCGAAGTCAGCTGGACATCTCAGACCCATACAAAGTCTACCGGATCATCCCGGAGTGCGCCAAGAAGCGATCCAAACAGGAGGATGGTGGCAGCCCCCTGAGTCCTCTGAGTTACCCCATGCTACCCTCCTACCCCGCCCTGCAGACACAGATGCCTGGGTACATGCCCAGTACAGAGAGAGGTTGGATGAAGGACTATCTTCCAGAGCAGGCCTCTCTTCCTGAGCTGCCCTATGCCCAGTGCCCCTACCCCTCACGCAGCCTATCCTGGGCCCAGGGGCCCAGCATGGACAACGGGTACCAGATCACAGGGTCCTTCTACACCTACAGCGCTACTGACGCCCAGCCCTCCCCCTTCACACTGGACACCAGCATGAGATCAGCAGAGGCActctcagATATGCGGTTACATGTGTCAGTGTTTTACCGGGACTCTCTGTGGAGGGAGGTGACCACCTCCAGTCCAGAAGGCTGTCGCATCGCTCCCTGCTCCCCAGACGAAAAGCTTTATTCCCCCACTGTGGGTCCAGACCTGGTGCCCCTACCCCTGGACAGCCTCCCAGccctggggaggggggaggagtgtCCTCCTAGCCCCCCTAGTTGTCCCCTGGAGAGGGGCGTGCTACTGTGGATGGCCCCAGATGGCCTCTACGCCCGGCGGCTGTGCCAGGAGAGAGTGTTCTGGGAGGGAGGGTTATCATCCTATGTAGACAAACCCAACAAGCTGGAGAGAGAacacacctgtaaactactgCACACACAGGACTACCTCACAGAGTTGCAGGGCTATGCCCTCCACTGTCGGCCCCCTCCACGTCTCCAGGTGCTGCTGAGCTTCGGAGACGAGTGTCTGGATCCCCAGAGACAGAGGACCCTCACTGTACAGGTGGAACCCATGTTTGCCAGGCAGCTGCTGTACTACACCCAGCATCAGCAGTCCAGCGGACACTACTACCGCAGCTACGACCTCCCTCTCCCTGGGGTCACGGAACACAGCATGACCCCTTCCATAACCGAGGACTACCAGAGGGTCATCACacatcaccatagcaacaccctgCAGGACTGACTAATCTGACCATCTCTGATCAGTCAGACTGCGGTGCAGGAcatggggagaggagaagagagggagagcctgGGGAGCCGAGGAAAGAGTTGTCACACTGTACTCTGGATCACACATTTCCATCAAAGCTGAAGTAGAACTATGCCCATCCAAGCCAAACTGAACTTAACCAGGCCATGGGGGAACGTACACTGGGACCACTGAAGAGGCTAACAGATAGTTGTATGCTGTAGATGTGTGTTGTAAGGGAGTCAACACCCCAAATTCTTATGGATCAAACTGTATTTCACCTACTCTCAGGGAGCCATCCTTTGGCCTTAAAGACTCAAACTTGACCGCCGTTTTGCAAGGTCCACTTTGTGACAACAGAACTGACAGCTGTAGTGATTGTATCGACATGCTCTAGagtcgtttgtgtgtgtgtttttgtatctGCATTTTATTGTATGATCGTGTGTAGTATGGCCATGCTGATGTTGACATGCTTTCTTCTGTAAATACATTTGCCCTGTTACTTCTAGTGTATAGCATCACATTTCCTCAATCATAAATACTGCAGTTCAGAGATGACCAAAGACTACCACTGAGATTTGATCACACTGAAACACGTACTAGCATGCCGAACCTTTGGATTGGCTCACTGTGTCATACACTGGGGAATGTTTTGTAATGGAATAATTAAAATGTTTTAAGCAAAAAAACTTTGCATGTTTTGAGACACACATCAAATGAATAGAAAGAGGGCTCGTGTTAGATAAGGGATTTGTGAGAAGTGACATCCTTTGTGTGTGTACAGGAAGCCTGGTTCAGATGCAGGATGATGCTGGTTAATCAAACACACTCGCAGGAGAACGCGGTCATAAACAATGGGTGATGACATCaccaggggaggaggaagaggtcggcCACTCTTTCCGC
>XM_021599601.2
GACCCCATGGTCTCCTGCCTGCTCAGCCCACGCCAGACAGCTGTCACTCACCCAATGCCCAGCCAATCACCGTTTGACTTCAATATATATAGATTGCTCCACTTTCCAGCGCTGCGGGTGTCTTTTTCTGCGACTGACGTTCGCGAGGGTTTCCCCTGCCGTTTACGGGAGGCATGCGCAGCATGAAGGTTCACAGACACGAAAAGCCCAGCATCCACGCTCGACTTCATTTCGCCCCGCCCCCATCTACAACTGATTTAAGTTGAGTTGTCACGCTGCATTATGATCTTTCAAGACTGATTGATTTCAAAACTCAAAGGGGTTTCGAGTTTCAGCGGTAAGTCAAGGACATTTGCTCTGCTCCCGCTCAAATCTATAGGCTACCTGCAGCAAAAAAAATACGTTTACATGCAAAGATGAACCCTGAGTCGGACTACGGGATGTCTACGGTGAGCTGTGGGAACGGAAAGCTCCGCTCGTGGCTAATCGAGCAGGTGGATACCGGGAAGTACCAGGGCCTGGTCTGGGAGAACGAAGAAAAGAGCATCTTCAGGATACCATGGAAGCACGCGGGCAAGCAGGACTACAACCGGGACGAGGATGCCGCTCTCTTCAAGGCTTGGGCGCTGTTTAAAGGCAAGTTTCGGGAGGGCATCGACAAACTGGACCCGCCAACGTGGAAGACTCGCCTGCGGTGCGCGCTCAACAAAAGTAACGACTTCGAGGAGCTCGTGCAGCGAAGTCAGCTGGACATCTCAGACCCATACAAAGTCTACCGGATCATCCCGGAGTGCGCCAAGAAGCATTTCTTGCTATCAGGATCCAAACAGGAGGATGGTGGCAGCCCCCTGAGTCCTCTGAGTTACCCCATGCTACCCTCCTACCCCGCCCTGCAGACACAGATGCCTGGGTACATGCCCAGTACAGAGAGAGGTTGGATGAAGGACTATCTTCCAGAGCAGGCCTCTCTTCCTGAGCTGCCCTATGCCCAGTGCCCCTACCCCTCACGCAGCCTATCCTGGGCCCAGGGGCCCAGCATGGACAACGGGTACCAGATCACAGGGTCCTTCTACACCTACAGCGCTACTGACGCCCAGCCCTCCCCCTTCACACTGGACACCAGCATGAGATCAGCAGAGGCActctcagATATGCGGTTACATGTGTCAGTGTTTTACCGGGACTCTCTGTGGAGGGAGGTGACCACCTCCAGTCCAGAAGGCTGTCGCATCGCTCCCTGCTCCCCAGACGAAAAGCTTTATTCCCCCACTGTGGGTCCAGACCTGGTGCCCCTACCCCTGGACAGCCTCCCAGccctggggaggggggaggagtgtCCTCCTAGCCCCCCTAGTTGTCCCCTGGAGAGGGGCGTGCTACTGTGGATGGCCCCAGATGGCCTCTACGCCCGGCGGCTGTGCCAGGAGAGAGTGTTCTGGGAGGGAGGGTTATCATCCTATGTAGACAAACCCAACAAGCTGGAGAGAGAacacacctgtaaactactgCACACACAGGACTACCTCACAGAGTTGCAGGGCTATGCCCTCCACTGTCGGCCCCCTCCACGTCTCCAGGTGCTGCTGAGCTTCGGAGACGAGTGTCTGGATCCCCAGAGACAGAGGACCCTCACTGTACAGGTGGAACCCATGTTTGCCAGGCAGCTGCTGTACTACACCCAGCATCAGCAGTCCAGCGGACACTACTACCGCAGCTACGACCTCCCTCTCCCTGGGGTCACGGAACACAGCATGACCCCTTCCATAACCGAGGACTACCAGAGGGTCATCACacatcaccatagcaacaccctgCAGGACTGACTAATCTGACCATCTCTGATCAGTCAGACTGCGGTGCAGGAcatggggagaggagaagagagggagagcctgGGGAGCCGAGGAAAGAGTTGTCACACTGTACTCTGGATCACACATTTCCATCAAAGCTGAAGTAGAACTATGCCCATCCAAGCCAAACTGAACTTAACCAGGCCATGGGGGAACGTACACTGGGACCACTGAAGAGGCTAACAGATAGTTGTATGCTGTAGATGTGTGTTGTAAGGGAGTCAACACCCCAAATTCTTATGGATCAAACTGTATTTCACCTACTCTCAGGGAGCCATCCTTTGGCCTTAAAGACTCAAACTTGACCGCCGTTTTGCAAGGTCCACTTTGTGACAACAGAACTGACAGCTGTAGTGATTGTATCGACATGCTCTAGagtcgtttgtgtgtgtgtttttgtatctGCATTTTATTGTATGATCGTGTGTAGTATGGCCATGCTGATGTTGACATGCTTTCTTCTGTAAATACATTTGCCCTGTTACTTCTAGTGTATAGCATCACATTTCCTCAATCATAAATACTGCAGTTCAGAGATGACCAAAGACTACCACTGAGATTTGATCACACTGAAACACGTACTAGCATGCCGAACCTTTGGATTGGCTCACTGTGTCATACACTGGGGAATGTTTTGTAATGGAATAATTAAAATGTTTTAAGCAAAAAAACTTTGCATGTTTTGAGACACACATCAAATGAATAGAAAGAGGGCTCGTGTTAGATAAGGGATTTGTGAGAAGTGACATCCTTTGTGTGTGTACAGGAAGCCTGGTTCAGATGCAGGATGATGCTGGTTAATCAAACACACTCGCAGGAGAACGCGGTCATAAACAATGGGTGATGACATCaccaggggaggaggaagaggtcggcCACTCTTTCCG
>XM_021599599.2
ACCCCATGGTCTCCTGCCTGCTCAGCCCACGCCAGACAGCTGTCACTCACCCAATGCCCAGCCAATCACCGTTTGACTTCAATATATATAGATTGCTCCACTTTCCAGCGCTGCGGGTGTCTTTTTCTGCGACTGACGTTCGCGAGGGTTTCCCCTGCCGTTTACGGGAGGCATGCGCAGCATGAAGGTTCACAGACACGAAAAGCCCAGCATCCACGCTCGACTTCATTTCGCCCCGCCCCCATCTACAACTGATTTAAGTTGAGTTGTCACGCTGCATTATGATCTTTCAAGACTGATTGATTTCAAAACTCAAAGGGGTTTCGAGTTTCAGCGAGATGAACCCTGAGTCGGACTACGGGATGTCTACGGTGAGCTGTGGGAACGGAAAGCTCCGCTCGTGGCTAATCGAGCAGGTGGATACCGGGAAGTACCAGGGCCTGGTCTGGGAGAACGAAGAAAAGAGCATCTTCAGGATACCATGGAAGCACGCGGGCAAGCAGGACTACAACCGGGACGAGGATGCCGCTCTCTTCAAGGCTTGGGCGCTGTTTAAAGGCAAGTTTCGGGAGGGCATCGACAAACTGGACCCGCCAACGTGGAAGACTCGCCTGCGGTGCGCGCTCAACAAAAGTAACGACTTCGAGGAGCTCGTGCAGCGAAGTCAGCTGGACATCTCAGACCCATACAAAGTCTACCGGATCATCCCGGAGTGCGCCAAGAAGCATTTCTTGCTATCAGGATCCAAACAGGAGGATGGTGGCAGCCCCCTGAGTCCTCTGAGTTACCCCATGCTACCCTCCTACCCCGCCCTGCAGACACAGATGCCTGGGTACATGCCCAGTACAGAGAGAGGTTGGATGAAGGACTATCTTCCAGAGCAGGCCTCTCTTCCTGAGCTGCCCTATGCCCAGTGCCCCTACCCCTCACGCAGCCTATCCTGGGCCCAGGGGCCCAGCATGGACAACGGGTACCAGATCACAGGGTCCTTCTACACCTACAGCGCTACTGACGCCCAGCCCTCCCCCTTCACACTGGACACCAGCATGAGATCAGCAGAGGCActctcagATATGCGGTTACATGTGTCAGTGTTTTACCGGGACTCTCTGTGGAGGGAGGTGACCACCTCCAGTCCAGAAGGCTGTCGCATCGCTCCCTGCTCCCCAGACGAAAAGCTTTATTCCCCCACTGTGGGTCCAGACCTGGTGCCCCTACCCCTGGACAGCCTCCCAGccctggggaggggggaggagtgtCCTCCTAGCCCCCCTAGTTGTCCCCTGGAGAGGGGCGTGCTACTGTGGATGGCCCCAGATGGCCTCTACGCCCGGCGGCTGTGCCAGGAGAGAGTGTTCTGGGAGGGAGGGTTATCATCCTATGTAGACAAACCCAACAAGCTGGAGAGAGAacacacctgtaaactactgCACACACAGGACTACCTCACAGAGTTGCAGGGCTATGCCCTCCACTGTCGGCCCCCTCCACGTCTCCAGGTGCTGCTGAGCTTCGGAGACGAGTGTCTGGATCCCCAGAGACAGAGGACCCTCACTGTACAGGTGGAACCCATGTTTGCCAGGCAGCTGCTGTACTACACCCAGCATCAGCAGTCCAGCGGACACTACTACCGCAGCTACGACCTCCCTCTCCCTGGGGTCACGGAACACAGCATGACCCCTTCCATAACCGAGGACTACCAGAGGGTCATCACacatcaccatagcaacaccctgCAGGACTGACTAATCTGACCATCTCTGATCAGTCAGACTGCGGTGCAGGAcatggggagaggagaagagagggagagcctgGGGAGCCGAGGAAAGAGTTGTCACACTGTACTCTGGATCACACATTTCCATCAAAGCTGAAGTAGAACTATGCCCATCCAAGCCAAACTGAACTTAACCAGGCCATGGGGGAACGTACACTGGGACCACTGAAGAGGCTAACAGATAGTTGTATGCTGTAGATGTGTGTTGTAAGGGAGTCAACACCCCAAATTCTTATGGATCAAACTGTATTTCACCTACTCTCAGGGAGCCATCCTTTGGCCTTAAAGACTCAAACTTGACCGCCGTTTTGCAAGGTCCACTTTGTGACAACAGAACTGACAGCTGTAGTGATTGTATCGACATGCTCTAGagtcgtttgtgtgtgtgtttttgtatctGCATTTTATTGTATGATCGTGTGTAGTATGGCCATGCTGATGTTGACATGCTTTCTTCTGTAAATACATTTGCCCTGTTACTTCTAGTGTATAGCATCACATTTCCTCAATCATAAATACTGCAGTTCAGAGATGACCAAAGACTACCACTGAGATTTGATCACACTGAAACACGTACTAGCATGCCGAACCTTTGGATTGGCTCACTGTGTCATACACTGGGGAATGTTTTGTAATGGAATAATTAAAATGTTTTAAGCAAAAAAA
>TU2548493
CCACCACACCAGTTCATAGGAATTCACATTGGTCAAAATTAATAAATTctctaccacccctctctctctcctccccccctccgcTATCTCAGACCTGCAGGGTTATTCCCTCCAGTCGCCCCTCTCCATGCCACTCCTCTGTACCTAACCTGACCATCTAGACCCTATTAACCTTTATTTCTCTGTCTACCAGAGTTGCAGGGCTATGCCCTCCACTGTCGGCCCCCTCCACGTCTCCAGGTGCTGCTGAGCTTCGGAGACGAGTGTCTGGATCCCCAGAGACAGAGGACCCTCACTGTACAGGTGGAACCCATGTTTGCCAGGCAGCTGCTGTACTACACCCAGCATCAGCAGTCCAGCGGACACTACTACCGCAGCTACGACCTCCCTCTCCCTGGGGTCACGGAACACAGCATGACCCCTTCCATAACCGAGGACTACCAGAGGGTCATCACacatcaccatagcaacaccctgCAGGACTGACTAATCTGACCATCTCTGATCAGTCAGACTGCGGTGCAGGAcatggggagaggagaagagagggagagcctgGGGAGCCGAGGAAAGAGTTGTCACACTGTACTCTGGATCACACATTTCCATCAAAGCTGAAGTAGAACTATGCCCATCCAAGCCAAACTGAACTTAACCAGGCCATGGGGGAACGTACACTGGGACCACTGAAGAGGCTAACAGATAGTTGTATGCTGTAGATGTGTGTTGTAAGGGAGTCAACACCCCAAATTCTTATGGATCAAACTGTATTTCACCTACTCTCAGGGAGCCATCCTTTGGCCTTAAAGACTCAAACTTGACCGCCGTTTTGCAAGGTCCACTTTGTGACAACAGAACTGACAGCTGTAGTGATTGTATCGACATGCTCTAGagtcgtttgtgtgtgtgtttttgtatctGCATTTTATTGTATGATCGTGTGTAGTATGGCCATGCTGATGTTGACATGCTTTCTTCTGTAAATACATTTGCCCTGTTACTTCTAGTGTATAGCATCACATTTCCTCAATCATAAATACTGCAGTTCAGAGATGACCAAAGACTACCACTGAGATTTGATCACACTGAAACACGTACTAGCATGCCGAACCTTTGGATTGGCTCACTGTGTCATACACTGGGGAATGTTTTGTAATGGAATAATTAAAATGTTTTAAGC

Function

symbol description
irf4 Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of cytokine production and positive regulation of transcription by RNA polymerase II. Located in cytosol and nucleoplasm. Implicated in acute lymphoblastic leukemia; anaplastic large cell lymphoma; chronic lymphocytic leukemia; multiple myeloma; and peripheral T-cell lymphoma. Biomarker of dilated cardiomyopathy and hematologic cancer (multiple).

NR:

description
interferon regulatory factor 4-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599602.2 False 2650 mRNA 0.53 10 35493954 35500738
XM_021599601.2 False 2740 mRNA 0.53 10 35493955 35500737
XM_021599599.2 False 2446 mRNA 0.53 10 35494171 35500736
TU2548493 True 1180 lncRNA 0.48 2 35494178 35495631

Neighbor

gene id symbol gene type direction distance location
LOC110521759 LOC106584097 coding downstream 274265 35216708 ~ 35219689 (-)
LOC110521758 LOC106584076 coding downstream 288762 35197810 ~ 35205192 (-)
LOC110521756 LOC106584201 coding downstream 324684 35166887 ~ 35169270 (-)
LOC110521753 LOC106584200 coding downstream 735808 34742934 ~ 34758146 (-)
LOC110521746 LOC106584195 coding downstream 1010379 34398316 ~ 34483575 (-)
LOC110520993 LOC106584074 coding upstream 44838 35545576 ~ 35577047 (-)
phactr1 LOC106584070 coding upstream 141659 35642397 ~ 35717855 (-)
LOC110521771 igfbp-3a2 coding upstream 309830 35810568 ~ 35873392 (-)
LOC110521773 LOC106584067 coding upstream 399737 35900475 ~ 35966970 (-)
LOC118945798 NA coding upstream 418173 35918911 ~ 35920667 (-)
G2228740 LOC100380722 non-coding downstream 2355 35479415 ~ 35491599 (-)
G2228637 NA non-coding downstream 124830 35368798 ~ 35369124 (-)
G2228634 NA non-coding downstream 129448 35364212 ~ 35364506 (-)
G2228631 NA non-coding downstream 132383 35361356 ~ 35361571 (-)
G2228626 NA non-coding downstream 134240 35359502 ~ 35359714 (-)
G2229001 NA non-coding upstream 26934 35527672 ~ 35527921 (-)
G2228993 psmg4 non-coding upstream 42834 35543572 ~ 35545433 (-)
G2229040 NA non-coding upstream 88434 35589172 ~ 35589450 (-)
G2229041 NA non-coding upstream 90234 35590972 ~ 35591204 (-)
G2229044 NA non-coding upstream 98757 35599495 ~ 35599793 (-)
G2227801 NA other downstream 951335 34542217 ~ 34542619 (-)
G2227478 NA other downstream 1170299 34311142 ~ 34323655 (-)
G2226745 NA other downstream 1684060 33809379 ~ 33809894 (-)
LOC110521741 LOC106584188 other downstream 1791511 33686041 ~ 33710890 (-)
G2226519 NA other downstream 1864060 33629122 ~ 33629894 (-)
G2229175 NA other upstream 298066 35798804 ~ 35799357 (-)
G2229647 NA other upstream 712408 36213146 ~ 36214385 (-)
LOC110521777 LOC106584061 other upstream 1019614 36520352 ~ 36541228 (-)
LOC110521791 LOC106584041 other upstream 2000472 37498832 ~ 37523064 (-)
G2232820 NA other upstream 3264684 38765422 ~ 38767903 (-)
LOC110521763 LOC106584075 coding upstream 4357 35499988 ~ 35514392 (-)

Expression


Co-expression Network