LOC118945798


Basic Information

Item Value
gene id LOC118945798
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 35918911 ~ 35920667 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040913.1
CCCACCGGGTAGCACAGAGCCacactttaaggggcattgcactaataatggcgctgactagggaaacgttccCGCTGTTGGTGCCAGTTTGcatgttcaaactaaaacaatgcaACTAATAATGGCGTGAAAAATGTCTCTTTGATATTAATTCGGAGGACagatattattaaatattaaagcattagacctctcactaaaagcGTCAGtcaaaaataaatgaaaagcaCACATTTATAAATCCCAAACTCTAAACATAATTTAGAAAGGTAGATAcaaattatttgtgacattgtggttacaataaagaatgtaaatAAGATGTAAACAATATGCTCTGTTTTTACTTACTTACAGTAGTGATGGAAAGCTGGTggcattttgaaaacaggttttcaaacactTTTAGCCTGATTAGCAGCATAATCAAAGTGAAGACAATCTGCGATATGCTGTATACTTACGGCCTATTGTAAGCTGAAAGTCACACCTGTCCAGTACTCACCCCACCACAAACTCCACCCTTAACACAGTTACCGTTCAAAAACGAGCtgtttatctaaaaaaaaaaaaaaaaaaagaggacaGACGAAATGGACATCGTTTTCATCAAGCCAGCTTCTTTCTATGGCGCTATCTGTTCTAGGGTTAGGACCGTAACCACGAGAGGACTTTACAATGAGGCAGAGCTGATCACCAAAACTAAAGaGCATACAACCATGCCGACAACCATtcgtggagatcagtggagaaAGGGCTGGACAACTGGCCGCACCGTAAAAAACGCATGGTTGCCAAGAAAGCGACCACTGTAATCGATGGGGCTCAGGGTGGTACCATTctgctcatctgatgaagatgCACATGGATCAGATTCAAACTTTGAAGACTGAGATTGAGTCATTAAAGGCAGACCagcataaaaaaaacattgccgcccagatctagtgtgtgtgtgtgtgtgtgtgtatgtgcctgtgtgtgtgtgtggctgtttgtgtgtgtcctcgTGTGTGTGATTGCATCATGGAACGTGTAATTGCTGTAATTTGAGAATGGCAGTGACATCAGCTCCTCTTGACTGTTGACCATTAACCTCTAAAGTTTAAGGCCTGTGACTGATCCTCTTCAATCTCAGAGGGATCAGCACGGGGTCAACGGTCTACACAAGTCTAAGGGCCGAAACCTGTTGCTCTTACTTTTAACAATAAAGAAGCACTTTTATCAACTTCCACTGCCCTCCAACAGTTGTTGTAATTACTTTTCACTTCAATTTGTTCCTTAATTAATGCAATTTGGTTGGACAGTGTGGTAGCGGCAGTGGCTCCTTCCCCAATACTCCAGACAGAAAGAGGGGATAAAagtagagagatggatggatgtgaTATTAGGTTGCATCATCAGTTTTGCTTATCTCGAAATGAGTTCTCCTTTAACATGTTAACCATCCTAGGAATACGTGGGACGCACACATATACACGCACCCAtcgacatacagttgaagtcgta

Function

NR:

description
upstream stimulatory factor 1-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040913.1 True 1509 mRNA 0.41 3 35918911 35920667

Neighbor

gene id symbol gene type direction distance location
LOC110521771 igfbp-3a2 coding downstream 45519 35810568 ~ 35873392 (-)
phactr1 LOC106584070 coding downstream 201056 35642397 ~ 35717855 (-)
LOC110520993 LOC106584074 coding downstream 341864 35545576 ~ 35577047 (-)
LOC110521763 LOC106584075 coding downstream 404519 35499988 ~ 35514392 (-)
irf4l irf4 coding downstream 418173 35493954 ~ 35500738 (-)
LOC110521774 LOC106584064 coding upstream 350445 36271112 ~ 36275588 (-)
zc3h3 LOC106584063 coding upstream 364179 36284846 ~ 36368490 (-)
LOC110521777 LOC106584061 coding upstream 602792 36520352 ~ 36541228 (-)
LOC110520995 LOC106584060 coding upstream 650411 36571078 ~ 36597415 (-)
LOC110521778 LOC106584059 coding upstream 682529 36603196 ~ 36614084 (-)
G2229231 NA non-coding downstream 40258 35878407 ~ 35878653 (-)
G2229179 NA non-coding downstream 112326 35806097 ~ 35806585 (-)
G2229176 NA non-coding downstream 118440 35800116 ~ 35800471 (-)
G2229169 NA non-coding downstream 131932 35786535 ~ 35786979 (-)
G2229165 NA non-coding downstream 138506 35779999 ~ 35780405 (-)
G2229354 NA non-coding upstream 50098 35970765 ~ 35971011 (-)
G2229366 NA non-coding upstream 58328 35978995 ~ 35979398 (-)
G2229377 NA non-coding upstream 64319 35984986 ~ 35985217 (-)
G2229466 NA non-coding upstream 115923 36036590 ~ 36040888 (-)
G2229496 NA non-coding upstream 164136 36084803 ~ 36085026 (-)
G2229175 NA other downstream 119554 35798804 ~ 35799357 (-)
G2227801 NA other downstream 1376292 34542217 ~ 34542619 (-)
G2227478 NA other downstream 1595256 34311142 ~ 34323655 (-)
G2226745 NA other downstream 2109017 33809379 ~ 33809894 (-)
LOC110521741 LOC106584188 other downstream 2216468 33686041 ~ 33710890 (-)
G2229647 NA other upstream 292479 36213146 ~ 36214385 (-)
LOC110521791 LOC106584041 other upstream 1580543 37498832 ~ 37523064 (-)
G2232820 NA other upstream 2844755 38765422 ~ 38767903 (-)
LOC110521806 NA other upstream 2918239 38838904 ~ 38856693 (-)

Expression


Co-expression Network