LOC118945800


Basic Information

Item Value
gene id LOC118945800
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 37410122 ~ 37414157 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040922.1
AAGCCTGCTCCTTTTTATTGACTTTAGACATCCACATATAAAAGCCTGTGGTTTTGTAGTTATGACTTTATAATGCTTGTTTCAAGTTTACACTTGACTGAAACCTACTTTTCAGGGAGACAGATGTCATGCCTACTCCTGCTCCCTGCTCGACATCGGCAGTCtcctaaccaccggtcctggtaACCCATATtgcgcacacctgctccccatcgttaagcacacctggacttcatcaccaccctgattactctcacTTCATATAGCCCTCTGtagcctcagtcatcaggcaATATTGGTTTTGGTTGCGTTCAGTACAAATCTCCTGTTTTGCATTTTcttcatgtttttttaaatgattaaactcaccttctgctCCTGTCTCGCTATATGTTACAGAATACTGCCTCAGAAGATTACGCCATCTTCCAGACGGTCAAGGAACAGGGTAATCTactccaccaacaccaccacgACGACCAGCTGGCTCTACTGGTTATGACTATGAAGGAAGTCCTGCGTGTTCTTCTCCGCCTCGACACCACCAGCGAGGTTCTCCATACCTCTGACGGAGGGCCTCCTACCATGGGTTGTCACAGTGAGCCAGTCCCCCAGCCTACCCAGTCATCCACCCAGGTCAAAGATGCCCAACTGTCCCTTCCAGAGAAGTATGACAGCACTCCATTTAAATACTGTGGTTTCCTActccagtgctccctctattttGCCCATCAGGAGGGAGCCCTCACCACTCagaggtccaaggttgccacgGTCATTTCTCTGCTGACCGGATGGGTATTGGTGTGGGCTACGGCCatctggaagagaggaggagctgGGTTCCTATGAaaggttcatggctctgttcagtGTGGTCTTTGCCCATCCTCGAGAGGGAAGAAAGGGAGGCGAGCTACTTTTCCAACTCCAGCAGGGTGCCCAGACCACTGTGGAGTACGCCGTCACCTTTCGGACTGTAGCAGCTTCCAGTGGATGGAATGAGCTTGCGTTTCGCACTCGACTGCGCGAAGAGGTCCAGACGGAATTCGCATGTCGGGATGACAACATATCCTTGGACGCTCTCATCGCGATGGCCATCCATCTGGATAACCTTCTTCGGGAGCGCCGGTGTCCACCTCGCCACTTACCTCACTCATTTGGCTCTCCTGAGGCAGAGTCTGAACCCATGGCGGTAGGGGCCACACACTTCTCCGTGATGTTGCCAGAGACATCTAGGGCTCTGTTCCTATTGCGGCCAGAAGAGGCACCAGATTCAGGGGTCCACTAGAGCAGAGGGGCGGCCCTGTGACCTTCGGTCTCACAGAGTAGGCGTGAATATTCCATTGTCATCGTTTTCCACCAAACCCTTTCTGGTTCCCATTTCACTGGATGACTATCCCTCAAATGTTGTCTCTTCAGCTCTAGTGGACTCGCAGGGAACTTTATCAGTCTGGCCCTCGCCTCCTCCCTGAACTAAACCTCAtaccctctctccttttcctgtcCAAGCCCTGGATATTCAACCGTTGGGATCCGGCACAATTATGAACGTCACAGCACCACTCACCCTCACCGTGGGACCCAAGCACCAGGAAAGACTTTCCTTCCTCATCACCACTCCCGTACACAAACTCATCCTCGGCCTTCCGTGGCTCCAACTTTGTAACCCCACCATCTCCCGGTCAAAGATGAGAATTACCGCCTGGGGACCAGGATGCCGGAGGACCTTATTTCCCGCACCCTGTGGTTCCACATCAGTGGAGGTCCTGTGAGTGTCCTCCTGCCCATCAATCGGTCCTCCCATATCATTGGCCCCATGTTTTGGGATGTAGATGTGGACATCCcccaggctctggagagggaacCAGCTCCAGCCACCTGCCCTCTGGAGAGCATCTACGTCCCCACGGGGGTGAGAGATTGGCTgttgacctgggcacacacatcaCTCACTGCTGGACACCCAGGAATCACCACACCATCCAATCCCTCGCCAataaatactggtggcccaccttggcgcaGGACGTCCCCCACTGTCAACTCTTGTTCAGCATGTACTCAATCCATCTGTCCATAGACTTTGTAATGGAAATCTCCCCGTTTCTGATGGTATTACCACTATTCTGGTTGTTTTTTCTAAATCCTGCCGTTTTATACCCCTCTCTGGTCTACCTTCCGCTCTCCAGGTTGCTGAGGCACTATTCCAGCACTATGGCCTTCACCTCGCGGTTCTGGAAAACCTTTATGGAAAAGCTGGGGGCCACGGTCAACCTCACATCGGGGTACCTGCCTCAGTCTAACGGACAGGTGGAGAGGACCAACCAGGAGCTGTGGAGGTCAACCATGGTTTGAGTTTTAGGGAGGCTGGGCAGAGGGTCCAGCCTAACTTGAGTCGCTACACTGCAGCAAGTGTCATCCTGACATTTCGAAATGAGGACAGAATTGTTAGACGACCCTTCAATGGAGGAAGAAACCGGCTGTTCACAGCAGAGCTGGAACAACACATAGTGAATATGTTCACTTCAAACAACAGCATACGTTTACGACAACTGCATCACCACGTCATCACCGACTACACAACATTCAGTAACATAAATAGGAGAGTTATGGAACTAGATGTTGCTGCAGAGCATCATGATTTTGTCTACGTTGATGTCAGCTTTAACCTAGCCAAAACAAGACGCAGGGGAAGAAACCTCATAGTCAACGTGCCATTGTCAATGTCCATGGACAGCGTGGTGGcaacatcacaatgtgtgcagcCATTAGTCAGAATGGTGTCCTTCATAATCATGTCACTCTTGGTCCTTACAAACTGCCCACATTATCACCTTCCTTGACACCCTGCATAATATCCTCATTCCCAATGACCAGCGGAATGGACCAGAGCAGTCCAGGTTTGTTGTCATCTGGGACAACGTAAGTTTCCACCGGGCTGCTCTGGTCTGAAAATGGTTCATTGGCCATCTGCAAGTTTTGATGCTCAACCTGCTACTATATTCTCCATTTCTAAACCCAGTAGGATAGTTATTTTCGGCGTGGCATTAAAAAGTATATGATCGCCAACCCCACCAATGCATACCACTATCCCAGGCGATGGAGGAGGCCTGTGGTGACATAGACGAGGGGTCATGCCAGGGTTGGATAAGCCACTCCAGACGCTACTTCCCCCGCTGTTTAGCCAGAGAGAACATTGCTTGTGATGTTGATGCGGTGCTGTGGCCAGACACAAATAGGAGACAGGATGCACcctaattgttttttttcttaatAGTAACAAGCCTATTTGATTATCTTCTACTGTATTTGttttgtctgttactgttcatccTGAAATATGGATGAAAACACAAATAcattttatcccccccccccccccttgcattTCTGTTTATAgtgtaaatatatactgtatatatttgtgcaCGTACATGGGTGTTATGACAAACTGCCATGGTCTCCACTGCACACTGAACATACAAAACGCACAAGATAGTTCTACATTAGTGTAGTGTTCTACATTTGTCACatccccggtgcacaactgagcaaggtacgttagtgtgtctagtttgagaaacagatgcctcacaattCCCCAACTAGCAGTTTCATTAactagtacccacaaaacaccagtctcgagtgaagaggcgactccgggatgctggccttctaggtcagagttgcaa

Function

NR:

description
uncharacterized protein LOC106676308

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040922.1 True 3698 mRNA 0.50 3 37410122 37414157

Neighbor

gene id symbol gene type direction distance location
LOC110521790 LOC106584045 coding downstream 53194 37173096 ~ 37356928 (-)
LOC110521789 LOC106584046 coding downstream 348141 36939533 ~ 37061981 (-)
LOC110521787 LOC106584048 coding downstream 483072 36916748 ~ 36927050 (-)
LOC110521786 LOC106584049 coding downstream 498915 36836457 ~ 36911207 (-)
LOC110521784 LOC106584052 coding downstream 668573 36724255 ~ 36741549 (-)
LOC110521791 LOC106584041 coding upstream 84675 37498832 ~ 37523064 (-)
LOC110520997 LOC106584040 coding upstream 135683 37549840 ~ 37559235 (-)
pars2 LOC106584039 coding upstream 146073 37560230 ~ 37562783 (-)
LOC110520999 sgip1 coding upstream 173891 37588048 ~ 37698966 (-)
LOC110521793 LOC106584037 coding upstream 316341 37730498 ~ 37818330 (-)
G2231552 NA non-coding downstream 387275 37022592 ~ 37022847 (-)
G2231470 NA non-coding downstream 518346 36891543 ~ 36891776 (-)
G2231465 NA non-coding downstream 528825 36881045 ~ 36881297 (-)
G2230378 NA non-coding downstream 593586 36816329 ~ 36816536 (-)
G2231991 NA non-coding upstream 288576 37702733 ~ 37702946 (-)
G2231993 NA non-coding upstream 292080 37706237 ~ 37706499 (-)
G2232001 NA non-coding upstream 304923 37719080 ~ 37719638 (-)
G2232003 NA non-coding upstream 307471 37721628 ~ 37721858 (-)
LOC110521777 LOC106584061 other downstream 885325 36520352 ~ 36541228 (-)
G2229647 NA other downstream 1195737 36213146 ~ 36214385 (-)
G2229175 NA other downstream 1610765 35798804 ~ 35799357 (-)
G2227801 NA other downstream 2867503 34542217 ~ 34542619 (-)
G2227478 NA other downstream 3086467 34311142 ~ 34323655 (-)
G2232820 NA other upstream 1351265 38765422 ~ 38767903 (-)
LOC110521806 NA other upstream 1424749 38838904 ~ 38856693 (-)
G2234611 NA other upstream 2542758 39956915 ~ 39993914 (-)
G2234837 NA other upstream 2871497 40285654 ~ 40286282 (-)

Expression


Co-expression Network