LOC110521791 (LOC106584041)


Basic Information

Item Value
gene id LOC110521791
gene name LOC106584041
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 37498832 ~ 37523064 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599658.2
ACTGGGAATAGGCTATAACAGCGCACTAACTTCACCATATCGACGTGTTTGCAATGGTAATAGGTTATGTTCTACATCCATGAGCTCAACAGCAGTATAGTCTATTAATGTTTCCCAGTGTTCGGCATATTTGAAAAAACTATGAAAGGACCTGGTGCATTATTTATCCTATTATCTCTCTGGCGCATTGATTGTGGAGGAGTTGTGTAGGTCATAGGATGCCAGACATTACACTTAAGAGATTTCTGTTATTGCAGTTTAACAGACAAGGATATCCAAGAAACATAGCTGAGGACGTAGTGTACTTTTGATTTAACAAAGAACGGAAGATTATGGATGAAGGCACAGTTTCCAACGACTCTGTTCCAGATTTAAAAGATTTGGAGGTGAAAATCGGACGGAAGACACCGGAGGGTTTGCTAAAGTGGATGCGGGAAGAGGCGTCAACGCAACGCGGAGATGCCAAGTTGAACTCGCCGGAGACCAAAGACGGAGACATCACAGAGAGGAAGAGCCTAGATGAGAAGATTAGAAAACTAAAAGTCGATATGGCCCACCTGCGCTCGGTGGATGTGAAGATCCTGCAGCAGCTGCTGGCGGTGCACGAGGGGATCGAGGCATGCAAGTGGCTCCTGGAGGAGCGCGGCACCCTGGCCAGCCGCTGCAGCAGCCTGACCAGCAGCCAGTACAGCCTGGGAGAGGGCCCTGGAGGAGACACCTCCTGGAGAGACAGCTGGAGCAGCCTGCAGGACCCCCTCAACGACAAGCTGGATAACATCTCTATAGGTAGCTACCTGGACACCCTGGCGGACGACATGGATGAGTACTGCCCCTCTAGTTCTGAGTATGCGCTGTGTTCTACTCCACTGGGGACTGAGATGCCCACTCGGACTGGCGGAGGGACAGGTGCTGGGGTAGGGGTGGGGAGAGGTGCTGGAGCAGGGGCAGTGTCTGGGGCAGGGGTTTTGGCTGGGACAGGAGGGGCAGGAGCTGAGTTAAGCCCGGGCACAGGGGTCAAGGTAGTTGTTGGGCCTGGGGCTCCCCAAGTCAAGCCAGAGATCCCCAAAGAGGAGCCTCCCATTTGGACTAAGGCCAAAGAGGTAGTGAAAGGAACCACCATCACCAAGGGCACCAAGGACTCCAACCAAATGCAGCAGCCCAGTAAGAGCAATGGCGTCCTGGAGAAGGCAGTCAGGCAAGCAGGAGGACTTGCTGACTCGGCCCGGGCCTGCCTGGCTGAGAAGCTGGGGAAAAACCAGAGCCCCAAACTCAAACCCTATAAGAACGGCAAGATCGACCTGGATGGCTGCAAGATGAACGGCACAATGCACCTGGAGTATGACGCCCATTGGCGATGGGTGCAGTCGCAGGATGATGTTACATTTCTGTGAGGTGGATGTATTACGCCACTAAAGACGCTTAGCCTGCTCCCATGTAATGACCGAACAGGTCAAAGGTTAAAAGAGATGGGTCTTGGACTGGTGTTGTGGTTGATTGCAGTTATTATACAAACTTCTACAATTGCCATTGTGCAATACACCAGGTGTGGATGAGTAGGAGAGTACAACACCATTACATTATGTTCTATTCACTCTAAATGTGACTGCACTAACTTTCTAGAACATTGACAGTATTATATTTGGGATAAAGTTGATATTTTGTTTACCCTCTCTTCCTGTGTGCAttgtaatatacagtaccatgGAAAATTAACAATttccaaaataaaatatatttgttacaCATACACATCTATAGAACCTAGTTAATGACCAAAGTTTGCCCTTACTGATCAATCCCATGTCAAAATGATTGTAAAACACCCTATCTATGAATTATAGATACCTGAATCCTTCTCATACATACTATACCATAGCATGCAAAGAGCATCTAGAATGTTCCTACTGTTTGCACACGATTGCTATTGTGGATGTCCTAAAATTACCTAAAGTACTTAACCAGTCAATGCAATATGTATAATCAGTGAATCACAATGCAATGAATCTGTGCATCAGGTTCTTATGTGGGTGGATGTGTTAAAATGTGTCAATATGGCTGAGTATTAATATTGTTATTTTGTGGATTATACAGTATTTTTCATTTGGAAAGCAGATGTTGTCATCGGTGTAATCCTAAACTATTATGCCTGTATCTCCCATTCCAAGTTAACTGCACTGTTTTTCTGATAATCCTGATGGTTTAAATGACTGATTTGCCCTCTTTCAGTACTCCGCTGTCTTAATGAGTCCAACTGTCTCTGTTCTTTTTCGGTGTTGAGTGGTGTGAAGTTATTAGTCATTTAGGTGGGTGAAAATTGCATGTCATGTGCTGACTGGTTTATTGGTAAAAAAAATCACCATGAAAAATGTGTGAAAAGCTTAATACAGGGAAGGAAAGCGATATTCCCTCGAAGCCTTTTGTATTCGGTTCTAAACAACCCACTCTCACACAGAACCATCACCACTGAAAGCTAATAATATCTCAACACTCCAAGGGAGGGGTTGCCAGGACAACtgatagagggtgagagagagagagagttcacgtgtgtatgtacatgtgtgtctgtgtgagtgcacGTCTAtgcattgatgtgtgtgtgtgtgtgtgtgcacatatgtGTGTTTGCAACTGGCTGCTGTGCACAGCTGCTCTGCTAGATTTAGATGAGGATGGAGGTGTCTCAAGGGGCTGTTCTTTACTAGGCTATCCCCTTATTTTTCATCAAGGGAAAaccacacatttcactgcacctatctgttGTATGTAAGAATCAAACATGTAAAAGAAATGAATAGTAATTGTCTCACCCCATCACcctctcccatcccatcccattctACCCTGTCGCCATTAGTCATATAATGCACTGTATTTGTTAGATAATGGATACCAGATAAGGTTTGTGTATTGCATAGGCATtgtgaatgttatcagatctatTCTGCATGTCATGGCACGAGATTAGTGTAACAAATCAATTTAGGAAGGAGTGTTTTCAATTGAATTAAGTTAGGATTTCCCTTCGTGATGTTTTGAATTCTGTATACTCATGCCTTTACTTCCTTGTTAGCGGTCTTAGTTCCATGTTTCtagggtgtctgtctctgtgtgatgtCTTTGCTTGCGTGGCTCCAGTTCTGTACCACTCAGCACTCCTATTAGAGCAGCCTTTTAATATGTTTCAGATGAGTTTTCACTTAAAGACCTCAGCGAGACTCCGTGACGGGCAGGCAGGGTAGGCAGTGCTTACCCTGTGATAgtctaataaa
>TU2551806
AATAGGTTATGTTCTACATCCATGAGCTCAACAGCAGTATAGTCTATTAATGTTTCCCAGTGTTCGGCATATTTGAAAAAACTATGAAAGGACCTGGTGCATTATTTATCCTATTATCTCTCTGGCGCATTGATTGTGGAGGAGTTGTGTAGGTCATAGGATGCCAGACATTACACTTAAGAGATTTCTGTTATTGCAGTTTAACAGACAAGGATATCCAAGAAACATAGCTGAGGACGTAGTGTACTTTTGATTTAACAAAGAACGGAAGATTATGGATGAAGGCACAGTTTCCAACGACTCTGTTCCAGATTTAAAAGATTTGGAGGTGAAAATCGGACGGAAGACACCGGAGGGTTTGCTAAAGTGGATGCGGGAAGAGGCGTCAACGCAACGCGGAGATGCCAAGTTGAACTCGCCGGAGACCAAAGACGGAGACATCACAGAGAGGAAGAGCCTAGATGAGAAGATTAGAAAACTAAAAGTCGATATGGCCCACCTGCGCTCGGTGGATGTGAAGATCCTGCAGCAGCTGCTGGCGGTGCACGAGGGGATCGAGGCATGCAAGTGGCTCCTGGAGGAGCGCGGCACCCTGGCCAGCCGCTGCAGCAGCCTGACCAGCAGCCAGTACAGCCTGGGAGAGGGCCCTGGAGGAGACACCTCCTGGAGAGACAGCTGGAGCAGCCTGCAGGACCCCCTCAACGACAAGCTGGATAACATCTCTATAGGTAGCTACCTGGACACCCTGGCGGACGACATGGATGAGTACTGCCCCTCTAGTTCTGAGTATGCGCTGTGTTCTACTCCACTGGGGACTGAGATGCCCACTCGGACTG
>TU2551810
AATAGGTTATGTTCTACATCCATGAGCTCAACAGCAGTATAGTCTATTAATGTTTCCCAGTGTTCGGCATATTTGAAAAAACTATGAAAGGACCTGGTGCATTATTTATCCTATTATCTCTCTGGCGCATTGATTGTGGAGGAGTTGTGTAGGTCATAGGATGCCAGACATTACACTTAAGAGATTTCTGTTATTGCAGTTTAACAGACAAGGATATCCAAGAAACATAGCTGAGGACGTAGTGTACTTTTGATTTAACAAAGAACGGAAGATTATGGATGAAGGCACAGTTTCCAACGACTCTGTTCCAGATTTAAAAGATTTGGAGGTGAAAATCGGACGGAAGACACCGGAGGGTTTGCTAAAGTGGATGCGGGAAGAGGCGTCAACGCAACGCGGAGATGCCAAGTTGAACTCGCCGGAGACCAAAGACGGAGACATCACAGAGAGGAAGAGCCTAGATGAGAAGATTAGAAAACTAAAAGTCGATATGGCCCACCTGCGCTCGGTGGATGTGAAGATCCTGCAGCAGCTGCTGGCGGTGCACGAGGGGATCGAGGCATGCAAGTGGCTCCTGGAGGAGCGCGGCACCCTGGCCAGCCGCTGCAGCAGCCTGACCAGCAGCCAGTACAGCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599658.2 False 3272 mRNA 0.45 2 37498832 37523064
TU2551806 False 836 TUCP 0.50 2 37501210 37523006
TU2551810 True 635 TUCP 0.48 2 37501411 37523006

Neighbor

gene id symbol gene type direction distance location
LOC118945800 NA coding downstream 84675 37410122 ~ 37414157 (-)
LOC110521790 LOC106584045 coding downstream 141904 37173096 ~ 37356928 (-)
LOC110521789 LOC106584046 coding downstream 436851 36939533 ~ 37061981 (-)
LOC110521787 LOC106584048 coding downstream 571782 36916748 ~ 36927050 (-)
LOC110521786 LOC106584049 coding downstream 587625 36836457 ~ 36911207 (-)
LOC110520997 LOC106584040 coding upstream 26776 37549840 ~ 37559235 (-)
pars2 LOC106584039 coding upstream 37166 37560230 ~ 37562783 (-)
LOC110520999 sgip1 coding upstream 64984 37588048 ~ 37698966 (-)
LOC110521793 LOC106584037 coding upstream 207434 37730498 ~ 37818330 (-)
LOC110521794 NA coding upstream 305002 37828066 ~ 37829673 (-)
G2231552 NA non-coding downstream 475985 37022592 ~ 37022847 (-)
G2231470 NA non-coding downstream 607056 36891543 ~ 36891776 (-)
G2231465 NA non-coding downstream 617535 36881045 ~ 36881297 (-)
G2230378 NA non-coding downstream 682296 36816329 ~ 36816536 (-)
G2231991 NA non-coding upstream 179669 37702733 ~ 37702946 (-)
G2231993 NA non-coding upstream 183173 37706237 ~ 37706499 (-)
G2232001 NA non-coding upstream 196016 37719080 ~ 37719638 (-)
G2232003 NA non-coding upstream 198564 37721628 ~ 37721858 (-)
LOC110521777 LOC106584061 other downstream 974035 36520352 ~ 36541228 (-)
G2229647 NA other downstream 1284447 36213146 ~ 36214385 (-)
G2229175 NA other downstream 1699475 35798804 ~ 35799357 (-)
G2227801 NA other downstream 2956213 34542217 ~ 34542619 (-)
G2227478 NA other downstream 3175177 34311142 ~ 34323655 (-)
G2232820 NA other upstream 1242358 38765422 ~ 38767903 (-)
LOC110521806 NA other upstream 1315842 38838904 ~ 38856693 (-)
G2234611 NA other upstream 2433851 39956915 ~ 39993914 (-)
G2234837 NA other upstream 2762590 40285654 ~ 40286282 (-)
G2237502 NA other upstream 4757692 42280756 ~ 42281362 (-)

Expression


Co-expression Network