pars2 (LOC106584039)


Basic Information

Item Value
gene id pars2
gene name LOC106584039
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 37560230 ~ 37562783 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036969336.1
cacagtaggtggcagtACACTGGGAATAGTTATCCAGGGAGATCTACATTACTCTTAAGAGGATGCATGGCTAGCATTCTTCTCTCGTGTAACTAATAGACATCGTATGAATCAAAATACTAGGTCATTGTTTCACTTTCTTACACGGGGATATTGACACCAGTCTGCTACAATGGAAGTGTTGATGCATCACCTTTGGCAGAGAGTCTTGCCCTGCCTACCCAGAGCCATGAGCACTCCCTGTAAAATCTATTTGAGCTGTGCTGCTGGACATGCCCCCACTGACTCCATCTCCCGACCTAGCACACACCTTCCCCTAGTCTCCCATCTCTTCCAGCCCTCCAACCTGCGTGATGTGGGCCAGGAGAAGCGTGCTCAGGTGGATATGACCTGCAAGAGCCAGAGACTGATGCAGCAGGCAGGTCTCATTCATCCCTCCAACCctggctgctactactacctcCCGGCCACCGTGCGCTCCATGGAGAAGCTGGTGAGGCTGATCGACCAGGAGATGCAGGGGATCGGTGGGCAGAAGCTGGACATGCCCAGCTTGTGTTCGGCAGAGCTGTGGAGACGCAGTGAGCGCTGGGACCTGATGGGGAAAGAGCTGTTCCGCCTGAGGGACCGCCACGGGGCGGAATACTGCCTGGGCCCCACCCATGAGGAGGCTGTGACAGAGCTACTGGCCTCTCAGGGAACCCTGTCCTACAGGCAGCTGCCTCTGCTACTCTACCAGATCACCCGCAAGTTCCGTGATGAGCCGAAGCCTCGGTTTGGGCTTCTACGCGGGCGGGAGTTCTACATGAAGGACATGTACACATTTGACATGAGCGAAGAAGCTGCATACCGCACATATGAATCTGTGTGTCAGGCTTACACCCGCCTTTTCTCTCGGTTAGGCCTGTGCATTGTCCAGGTCCACGCTGATACAGGAAACATTGGAGGTAAACTCTCCCATGAGTTCCAGCTTCTCGCAGACATCGGAGAGGACAGGCTACTGGTCTGTGGTAGCTGCTCCTTCTCTGCCAATGTGGAGACCATGGAACCAGGCCAGACAGACTGCCCACAGTGCCAGGAGGGAACGCTGGTGGAGTCTAAGGGCATAGAGGTAGGCCATACATTCTACCTAGGCACCAAGTACTCCTGCATATTCAACGCCACCTTCAACAACACCCAGAACAAGCCTGCTGTCACTGAGATGGGCTGCTTCGGGCTGGGTGTGACCCGGATCCTCGCTGCTGCCATCGAGGTGATGTCCACGGAGGAGGCAATCCGCTGGCCTGCGCTGCTTGCCCCCTATCAGGTCTGTGTTCTGCCCCCTAAAAGGGGCAGTAAGGTGGATGAGGTGGCTGGTTTAGCTGAGGAGCTGGCCCTCAGTCTGGGGGAGGCTCTGCCTAGGCTAAGAGGTGAGGTGGTTCTGGATGACCGGACACAGATGACCATTGGTAAGAGGCTGAAGGACGCCAGTCGGCTTGGATACCCGTACGTGGTGGTAGTGGGGCAGAAGGCTGCCGAGGAGACGCCCAGGTTTGAGGTGATCTGTCAGCAGACTGGTGAGACAACGTTCCTCAGTAGGGATGGACTTGTAGACCTACTCAGATGTGTGGAGACAGTCTGAGTTGCACTGATCTTGACATGGAACTGGACTaaacctttccccctcaggagactgaaaagatttggcatgggtccccagatcctcaaaaggttctacagctgcaccatcgagcgcatcctgactggttgcatcaccgcccggtatggcaactgctaggca

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006433 prolyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004827 proline-tRNA ligase activity molecular_function

KEGG:

id description
K01881 PARS, proS; prolyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036969336.1 True 1780 mRNA 0.56 3 37560230 37562783

Neighbor

gene id symbol gene type direction distance location
LOC110520997 LOC106584040 coding downstream 995 37549840 ~ 37559235 (-)
LOC110521791 LOC106584041 coding downstream 37166 37498832 ~ 37523064 (-)
LOC118945800 NA coding downstream 146073 37410122 ~ 37414157 (-)
LOC110521790 LOC106584045 coding downstream 203302 37173096 ~ 37356928 (-)
LOC110521789 LOC106584046 coding downstream 498249 36939533 ~ 37061981 (-)
LOC110520999 sgip1 coding upstream 25265 37588048 ~ 37698966 (-)
LOC110521793 LOC106584037 coding upstream 167715 37730498 ~ 37818330 (-)
LOC110521794 NA coding upstream 265283 37828066 ~ 37829673 (-)
LOC118945821 LOC106584037 coding upstream 361063 37923846 ~ 38011831 (-)
LOC110521795 LOC106584036 coding upstream 482748 38045531 ~ 38121078 (-)
G2231552 NA non-coding downstream 537383 37022592 ~ 37022847 (-)
G2231470 NA non-coding downstream 668454 36891543 ~ 36891776 (-)
G2231465 NA non-coding downstream 678933 36881045 ~ 36881297 (-)
G2230378 NA non-coding downstream 743694 36816329 ~ 36816536 (-)
G2231991 NA non-coding upstream 139950 37702733 ~ 37702946 (-)
G2231993 NA non-coding upstream 143454 37706237 ~ 37706499 (-)
G2232001 NA non-coding upstream 156297 37719080 ~ 37719638 (-)
G2232003 NA non-coding upstream 158845 37721628 ~ 37721858 (-)
LOC110521777 LOC106584061 other downstream 1035433 36520352 ~ 36541228 (-)
G2229647 NA other downstream 1345845 36213146 ~ 36214385 (-)
G2229175 NA other downstream 1760873 35798804 ~ 35799357 (-)
G2227801 NA other downstream 3017611 34542217 ~ 34542619 (-)
G2232820 NA other upstream 1202639 38765422 ~ 38767903 (-)
LOC110521806 NA other upstream 1276123 38838904 ~ 38856693 (-)
G2234611 NA other upstream 2394132 39956915 ~ 39993914 (-)
G2234837 NA other upstream 2722871 40285654 ~ 40286282 (-)
G2237502 NA other upstream 4717973 42280756 ~ 42281362 (-)

Expression


Co-expression Network